TCONS_00014446 (transcript) - C. hemisphaerica

Overview
NameTCONS_00014446
Unique NameTCONS_00014446
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length376

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00014446 ID=TCONS_00014446|Name=TCONS_00014446|organism=Clytia hemisphaerica|type=transcript|length=376bp
GGCGGGAGAAGAGGAATTGGTGGTGGTTTAGAAAGTCATCCAAGGCTAAC
ATGCGAGACACGTTTCCGGTCGAATAACAACGCGTTAAACATGCCTGCTg
cgaaaaaaatattgctggAAGCAGCTCCCCCAGGCTTCCGAATTTCACTA
TCAACATGTTATAATTACACCAACTCGTACAGAGAGAATTCGAGGCAAGC
TGTCCAGCACCACCATGGTAGAGGGGTCAATGCCAACATTTCTTTGAAAC
GTCCGTCACGGACAGTGGTATCCAAACTAGTGGTCAACCTCCACTGGAGT
ACAAATAATGTCAATTTGTTTTTGGAAGAGGCAGAAAATGATCCAACAAA
TCACATGATAATATTCATATTCACTG
Run BLAST on NCBI

protein sequence of TCONS_00014446-protein

>TCONS_00014446-protein ID=TCONS_00014446-protein|Name=TCONS_00014446-protein|organism=Clytia hemisphaerica|type=polypeptide|length=125bp
GGRRGIGGGLESHPRLTCETRFRSNNNALNMPAAKKILLEAAPPGFRISL
STCYNYTNSYRENSRQAVQHHHGRGVNANISLKRPSRTVVSKLVVNLHWS
TNNVNLFLEEAENDPTNHMIIFIFT
Run BLAST on NCBI

transcript from alignment at sc0000187:20423..20798

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00014446 ID=TCONS_00014446|Name=TCONS_00014446|organism=Clytia hemisphaerica|type=transcript|length=376bp|location=Sequence derived from alignment at sc0000187:20423..20798 (Clytia hemisphaerica)
CAGTGAATATGAATATTATCATGTGATTTGTTGGATCATTTTCTGCCTCT
TCCAAAAACAAATTGACATTATTTGTACTCCAGTGGAGGTTGACCACTAG
TTTGGATACCACTGTCCGTGACGGACGTTTCAAAGAAATGTTGGCATTGA
CCCCTCTACCATGGTGGTGCTGGACAGCTTGCCTCGAATTCTCTCTGTAC
GAGTTGGTGTAATTATAACATGTTGATAGTGAAATTCGGAAGCCTGGGGG
AGCTGCTTccagcaatatttttttcgcAGCAGGCATGTTTAACGCGTTGT
TATTCGACCGGAAACGTGTCTCGCATGTTAGCCTTGGATGACTTTCTAAA
CCACCACCAATTCCTCTTCTCCCGCC

Coding sequence (CDS) from alignment at sc0000187:20423..20798

>TCONS_00014446 ID=TCONS_00014446|Name=TCONS_00014446|organism=Clytia hemisphaerica|type=CDS|length=375bp|location=Sequence derived from alignment at sc0000187:20423..20798 (Clytia hemisphaerica)
AGTGAATATGAATATTATCATGTGATTTGTTGGATCATTTTCTGCCTCTT
CCAAAAACAAATTGACATTATTTGTACTCCAGTGGAGGTTGACCACTAGT
TTGGATACCACTGTCCGTGACGGACGTTTCAAAGAAATGTTGGCATTGAC
CCCTCTACCATGGTGGTGCTGGACAGCTTGCCTCGAATTCTCTCTGTACG
AGTTGGTGTAATTATAACATGTTGATAGTGAAATTCGGAAGCCTGGGGGA
GCTGCTTccagcaatatttttttcgcAGCAGGCATGTTTAACGCGTTGTT
ATTCGACCGGAAACGTGTCTCGCATGTTAGCCTTGGATGACTTTCTAAAC
CACCACCAATTCCTCTTCTCCCGCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008072XLOC_008072Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00014446-exon-sc0000187-1491911889:20423..20798TCONS_00014446-exon-sc0000187-1491911889:20423..20798Clytia hemisphaericaexon
TCONS_00014446-exon-sc0000187-1510915933:20423..20798TCONS_00014446-exon-sc0000187-1510915933:20423..20798Clytia hemisphaericaexon
TCONS_00014446-exon-sc0000187-1575043694:20423..20798TCONS_00014446-exon-sc0000187-1575043694:20423..20798Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00014446-proteinTCONS_00014446-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000187supercontigsc0000187:20423..20798 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.286489	0	0.819382	0.767095	1.61118	1.77397	0.860927	4.52752	0	0.293458	0	0.129456	6.53864	1.63461	0	0	0.205401	0.601123	0.243581	0.221451	0.456178	0.203564	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00014446 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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