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Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000029_pilon:249808..253660- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >XLOC_038541 ID=XLOC_038541|Name=XLOC_038541|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=3853bp|location=Sequence derived from alignment at sc0000029_pilon:249808..253660- (Clytia hemisphaerica_ch_hm2_pilon)
ATGTATTCTGGTTCTTCATTGGTCGATTTGAAAGCTGAATTATCGAGAAA
AGAAGAAGAGTTTGGGAAATTGAGAACAGGTGATGAAAAATCCAAGCGTG
GAAGTAGTAATAAGACTTTTCAAAAGGTAATAATATTTTTCAAATGAGAG
CGGTAATGTTTTTCAATTCTATGAGAGCTAGGGTCAAAATATATATTTTT
TAATTTTACAATTTTCCTGAGATTCAGTTAGGTGTTGGTACCTTGTACCA
AGTTGAAGACCAAAAAGTCAAAAATTGCTTTAGCCCATGCACATGTACAT
GCAGCACATTTTACAAAAGACTGAAGTACATACTTTTTTATATTAGAGCC
CATAGTACGGATCCGTGGGAGATGACACCTTCCGAAAAAGTTGAAAAAGG
GGGAACAGAAATTTTCAAGAAAAAAGGGCGGGGGGATAGCAAGAAAGGGC
GGGAGGGGTAGTCTAAGAAAGCGGCTTACTCTTGTCTCACGAATAGACGT
CCCCCCGCTAATTCTTAAAAGAAAAAAAATCCATCACCCCCGCTCTTTTT
AACCCCCCCCTAATTAAATTGGAATAATTCAATACTTTATTACAGTGTAG
ATAGACCTTAAACTTGTTAAAATTTTCCATTTTGTTAGTATTGGTTCTTA
TTTTACGTGTTCATTCTGGTTCATTTGTTAAATTTTCTTTTTTGTTGTTG
AAATTGATCTCAATTAAAAAAAATTCTGTCTTCAAACCCCCCTCTTATTC
CATCCCCCCCATTTATTAGAATTTAGAAGATTTTCCTACCCCCCTGCTTA
TTCGGACCCCCCCCCCCCCGTCTATTCGGGAGACAAGATTATATATATAT
TCTAAATTATTTTCAAGCACTGTTATGAAATTTGGTCTTCATGAAAGAAA
GTTTTCTGTTATAATCTGAGCCAAAAAAAAGAAAGAAGTTTATTATTTCG
CTTTCTCTCTCTAAAGATATTTCACATATATTTGCTAGCCATTTTTGTCG
AAAATCCTTGGGGGCAGGCATTTTTAAAGGTTGGGGGATGCCAAACAGGG
GGGGTCATTTAAGAAGCACTATGGAGCCCTATTTATAAGAACATTTAGGT
TAACTTTTTGTGAAAAAAACCCAAGATAAGTCTGTCTGTTCTAACTAATT
TTTTAAGAACACCAATAACAGCATACTTTTTAGGCTTAAAATTATCAAAA
AAATAAGCACATCGAGATAAGGATTAATATCAAGATTAAGATGTTATCCA
AATTAAGACGTTGTAAGAAAAAAATGTATAATTATTCAATTGTCGTATTC
CTTTTTAGATCCATACCATAACAAAATCTAAGAAAACGAAGAAAAATAAA
GTTGGTGATTGGAAAGATAGTGACGATGAAAAGGAAACTGAAGAATCTTC
TAAAGGCAAACAAATGTCTGATGAAATGAAAGAAATGTATGCGAAATCAC
AACAGAAGATGTTAGCCAAAGCCAAGATTTATGAGAAAATGCAAAAAGGT
TTGTCAGGATGGACTAGTGATTCTCAAAAACCTTGAGATGTCCCTCTGAT
ATTTCTCTTGTCTATTTGGAGGATATCTTTCCCGAAGCCCTTGAAATACT
TTTAGTCGGTATAAAAAATCACAGCAGAAGATATTAGCCAAAGCCAAGAT
ATATGAGAATTAATGCAAAAAGGTTTGTCAGGATGGGCTATTGATTCTCA
AAAACCTCAAGATGCCCCTCTGATATTTCTCTTGTATATTTGGAGGATTT
CTTTCTCGAAGCCTTTGAAATACTATTAACTGGTATGCAAAATCACAAAA
AAGGATGGCTAACGCTAAGATCTATGAGAAAATGCAAAATGTTTTTACAA
GATGAACTATTGACTCTCAAAATGTGTACCTCTTATAATTATATTGCCCA
TTTGGGGAAACTTTTTGTCAAAGCCCTTGAAATTTTATGATCTGGTATGC
AAAACCACAGCAGAAGCCAAGATTTATGAGAGTTAATGCAAAAAAAATTT
AAAAGATGAACTAGTGACCCTCTTATATTTCCATTGTCCATCTAAGAGTC
TAGGGAATTTCCAAACGAGAAGCTTTGACAATTAGCAGGATCAGCAACTA
ACTAAAATCTCGAGAAATTTTTCTCTATTTTTTAAACTTTTACAGATTTT
TTCTGGTTGTCAAATCTTATCTTAAAAAAAGCGGAAGTTTTTACTTTTTA
TCGAATTCAATTCTCCATTTTTCCCACTAAAGTTAACTTTTGATTGGTTA
GAATTATAGAAAAAAAGTTGTTAACCTTGCATTATTATACGATACAAGAC
TTGATTCTTGTCTGAGTTCGATTCAGTACTGGTTCGATTCCTGTAATGTC
TGAACATGGTCTCAGTGCTGTGATTCACTTGGCAAGTGAATGTACCTTTG
ACTGGGTCAACCAGGGATTTTTCTAAGCACTTTGAGCTGAGGCCGTTTTT
GTTAACTTAAATTGAATTTCTAATATGCCGGAAAAGGAACTTGCTCAGCA
AAGCTGTACATTGATGAAGCTGGGGGTCTTGTGGTTGTTCAGAAGGCGAA
GCTTCTAAAAACTCTTGAATATGTAGATATTAATTAGTTATTGTTGCTCA
TAAACAGCAAAAAATGTTAATTTCGCTAGAAAAAATTTATTTTGGATTGA
GTTTCAAAAACTCGACCTTAGATTGAGTATTTTGGCTGGTATACGTACAT
ACGTAAAAGTGCTTAGAAAAATCCCTGGTCAACCCATGCCATCTGAGGAG
AGTTGGGAGGATAAACGGGATTACAAGGATGCACTGTCCTCCCGACTCGT
CTGAATATATATACACTTTTGCGTGTCGCGAGCTCGAGTTGAGCGCAATG
ATTTTCCATTCATCGTCTCTCTCTTTATGAAATATTTTTTACCAAATGAA
TTTGTATTTAAAAAACTTTGATTTCAGGCGAAATGGAAGATATTCAAGAT
TTCAAAGGAGAAACTCGATATCTGGTCGATTTTGAACAAAAATATATAGA
TAGTGATGATATACCTACCAGTACATCTGGTTCCCAAGACAATATAAACC
GGTCCTTACCAAGAAATGACAATGCAGATGGGGTCTCTTCATCACAGGCA
GACTTTGAGAAGGAGGAGGCAAGGCGCCAAAGAGTCTCTGAGGATATTTA
TGCAGCGGATATAGACTATGTAGACCAATTGCATGAAAAATGGCGGCAAT
GGCAGGACGATTTGCTTGACGGACCTGTACATTATGAGAACGTTAAATTT
GATGAGATACGCAACCTGGGTACGAGTTATTTTGCTTTTTCGAGAGACGA
AGAAGAAAGGAAGCGGCAAATAGAAGATTTCCGGAAAATGAGAGAAGAAA
CTAAATCTGTGATCAAGAAAAAGGAAGCGTTACAAAACAAACGAAAAGCA
GCTCTCGACGCTAGACTGGAGAAAGTGAAACGTCGTAAAGCCGAAGACGA
AGGTAGGCTAGATGAATATTTAAAAGAACTAGCCGCTAAAGAACAAGCGG
AAAAGGAAATTGCCGAGGCTAAAGAAGTGAGTGAAAAGACTGAAGATGAA
GGTGATGTTGAAACGACAAAAGATGCGACGGACTATTTTATCAAACAATT
ACGTAAACAATCTACTAAAAAGAGAGACTGGGACCAAGGGAAACATGATA
ATTTTGTTGGACAAGCCTTTGTTAAAAGTGGTGTACAACAACGGACAGGG
TTATCTGCTAATGCGGATAGACCTTCTTCTACGGGTTCTGGTTCAGCTAC
AATGACATCACAGACTACTAAAAAAGAACCAAGTTATGAAAAGAAGATTG
AAAACATAAGGAAAGAAAGACCTGAAGAATTTGCGCCGCCTAGTTTTTAT
TAA Coding sequence (CDS) from alignment at sc0000029_pilon:249808..253660- >XLOC_038541 ID=XLOC_038541|Name=XLOC_038541|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=2484bp|location=Sequence derived from alignment at sc0000029_pilon:249808..253660- (Clytia hemisphaerica_ch_hm2_pilon)
ATGTATTCTGGTTCTTCATTGGTCGATTTGAAAGCTGAATTATCGAGAAA
AGAAGAAGAGTTTGGGAAATTGAGAACAGGTGATGAAAAATCCAAGCGTG
GAAGTAGTAATAAGACTTTTCAAAAGATGTATTCTGGTTCTTCATTGGTC
GATTTGAAAGCTGAATTATCGAGAAAAGAAGAAGAGTTTGGGAAATTGAG
AACAGGTGATGAAAAATCCAAGCGTGGAAGTAGTAATAAGACTTTTCAAA
AGATCCATACCATAACAAAATCTAAGAAAACGAAGAAAAATAAAGTTGGT
GATTGGAAAGATAGTGACGATGAAAAGGAAACTGAAGAATCTTCTAAAGG
CAAACAAATGTCTGATGAAATGAAAGAAATGTATGCGAAATCACAACAGA
AGATGTTAGCCAAAGCCAAGATTTATGAGAAAATGCAAAAAGATCCATAC
CATAACAAAATCTAAGAAAACGAAGAAAAATAAAGTTGGTGATTGGAAAG
ATAGTGACGATGAAAAGGAAACTGAAGAATCTTCTAAAGGCAAACAAATG
TCTGATGAAATGAAAGAAATGTATGCGAAATCACAACAGAAGATGTTAGC
CAAAGCCAAGATTTATGAGAAAATGCAAAAAGGCGAAATGGAAGATATTC
AAGATTTCAAAGGAGAAACTCGATATCTGGTCGATTTTGAACAAAAATAT
ATAGATAGTGATGATATACCTACCAGTACATCTGGTTCCCAAGACAATAT
AAACCGGTCCTTACCAAGAAATGACAATGCAGATGGGGTCTCTTCATCAC
AGGCAGACTTTGAGAAGGAGGAGGCAAGGCGCCAAAGAGTCTCTGAGGAT
ATTTATGCAGCGGATATAGACTATGTAGACCAATTGCATGAAAAATGGCG
GCAATGGCAGGACGATTTGCTTGACGGACCTGTACATTATGAGAACGTTA
AATTTGATGAGATACGCAACCTGGGTACGAGTTATTTTGCTTTTTCGAGA
GACGAAGAAGAAAGGAAGCGGCAAATAGAAGATTTCCGGAAAATGAGAGA
AGAAACTAAATCTGTGATCAAGAAAAAGGAAGCGTTACAAAACAAACGAA
AAGCAGCTCTCGACGCTAGACTGGAGAAAGTGAAACGTCGTAAAGCCGAA
GACGAAGGTAGGCTAGATGAATATTTAAAAGAACTAGCCGCTAAAGAACA
AGCGGAAAAGGAAATTGCCGAGGCTAAAGAAGTGAGTGAAAAGACTGAAG
ATGAAGGTGATGTTGAAACGACAAAAGATGCGACGGACTATTTTATCAAA
CAATTACGTAAACAATCTACTAAAAAGAGAGACTGGGACCAAGGGAAACA
TGATAATTTTGTTGGACAAGCCTTTGTTAAAAGTGGTGTACAACAACGGA
CAGGGTTATCTGCTAATGCGGATAGACCTTCTTCTACGGGTTCTGGTTCA
GCTACAATGACATCACAGACTACTAAAAAAGAACCAAGTTATGAAAAGAA
GATTGAAAACATAAGGAAAGAAAGACCTGAAGAATTTGCGCCGCCTAGTT
TTTATTAAGCGAAATGGAAGATATTCAAGATTTCAAAGGAGAAACTCGAT
ATCTGGTCGATTTTGAACAAAAATATATAGATAGTGATGATATACCTACC
AGTACATCTGGTTCCCAAGACAATATAAACCGGTCCTTACCAAGAAATGA
CAATGCAGATGGGGTCTCTTCATCACAGGCAGACTTTGAGAAGGAGGAGG
CAAGGCGCCAAAGAGTCTCTGAGGATATTTATGCAGCGGATATAGACTAT
GTAGACCAATTGCATGAAAAATGGCGGCAATGGCAGGACGATTTGCTTGA
CGGACCTGTACATTATGAGAACGTTAAATTTGATGAGATACGCAACCTGG
GTACGAGTTATTTTGCTTTTTCGAGAGACGAAGAAGAAAGGAAGCGGCAA
ATAGAAGATTTCCGGAAAATGAGAGAAGAAACTAAATCTGTGATCAAGAA
AAAGGAAGCGTTACAAAACAAACGAAAAGCAGCTCTCGACGCTAGACTGG
AGAAAGTGAAACGTCGTAAAGCCGAAGACGAAGGTAGGCTAGATGAATAT
TTAAAAGAACTAGCCGCTAAAGAACAAGCGGAAAAGGAAATTGCCGAGGC
TAAAGAAGTGAGTGAAAAGACTGAAGATGAAGGTGATGTTGAAACGACAA
AAGATGCGACGGACTATTTTATCAAACAATTACGTAAACAATCTACTAAA
AAGAGAGACTGGGACCAAGGGAAACATGATAATTTTGTTGGACAAGCCTT
TGTTAAAAGTGGTGTACAACAACGGACAGGGTTATCTGCTAATGCGGATA
GACCTTCTTCTACGGGTTCTGGTTCAGCTACAATGACATCACAGACTACT
AAAAAAGAACCAAGTTATGAAAAGAAGATTGAAAACATAAGGAAAGAAAG
ACCTGAAGAATTTGCGCCGCCTAGTTTTTATTAA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000029_pilon | genome | sc0000029_pilon:249808..253660 - |
Properties
| Property Name | Value |
|---|
| Aaloc | 319-1242:925 |
| Aaloc | 127-315:2546 |
| Aaloc | 1-126:3854 |
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