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Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000253_pilon:92292..96965+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >XLOC_043308 ID=XLOC_043308|Name=XLOC_043308|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=4674bp|location=Sequence derived from alignment at sc0000253_pilon:92292..96965+ (Clytia hemisphaerica_ch_hm2_pilon)
atggtaaaatgtaAGTGGTGCAAAGAGGAAGTTGAATCACGTCTTCTCGA
GCTACATTACCATCAAATACATTCAGCACTTCCGAAATGTGATGACCCAG
CTTGCAGTGGTCGAGTACGGaggtttaaaaatttgaatagcGTAGAACAA
CATAAAGCAGCATTGTCTAGCCATCGTggtatttcttatatttctgtTTC
TGTCGGTTTCTGTGGTGTTTCTCGGAAAAAGCTGAAGAGTACAAAAGCTG
CGAGAAAACATCAAAACGACTCTTCCAAGCATGCGATATGCGATCATGCA
GAATGCCgaaacaaaaacagaatttttagTAATCGAGCAGCCATGGAGTC
ACATAAAAAAGACAAACATAGGTCATCAAACTTAACAAATCAGAACCGTC
TATCACCacaaaatGtgcaaaaatggcaaaatcttCCAAAGTCCTTTTGA
GTTACTACCAAAAGGAAGTTTTACCCTCAACTGAAGACAGAAAGAGGTCA
AAAAGTCTAGCGAGAGATCACATTCTACGAGAGCTATTGGAAAACATATC
TGACCCAGTAGATAAAAATTTGTACAAGGGTTCACTGGAAAAAGCTGGCA
GCACTTCaacaaataccaaaatcaaccTTGCTGACGAGTTCGATTTTGAC
TTACATTTGAATATCAGAAGCTTCTCTTTGGACAGAAAGTGTCTTCGTTA
CAAATTTACTGCGGTAAGATTTTTATTCCTCGACTTTCTCTGGTATAAAA
CTAGCCAAGACATATATGATGAACACTAGTGGACCCTAGTGAGTTTATTC
GTCCACCCCGTTTGACGACGGAGGAGGGACCAAAACGATTTGGGATAATT
CAAAGCTTTGACCTGTAATATAGACTGGCAAACTATTAATCATTTAAGGG
CGGGAATCATAAGGCGTTTGAGAAAAGCTGGTGTAGAGAGCAGCAAATAT
CAACTCCTCCcgtcaaaagattttttctccctACGCGCATTCCTATTCAC
ATCATCTCGCGTGATATTGTTCCAAGCCGATTGACGTGCCAGTCTTATCC
AGGATACCTGAAACTAGtttgacgttttttaactgttttttataatgact
tttgactttatacctccatatctcgataactactttttcaaaattaaaaa
atgatacatcaaaatttaagtttgcctttcctctttaccacgaaaagaga
atttagttaaaattcaatttttttcggacacagttaccctccaaactctt
ataccttttcgtgggtcacccggtatttatTTTGTTTGGACTGAGATTCA
GATGGGAAAATGAAAGAGGtttggaaaacaaaaaaactcatcGACGTTTA
TAAAGTCTTGTTTCATTATTTTCTGTATACATTCATACAATTTAAATGAT
GATATGATATTTTCAGGATGACGATACCACAAGCTTGAATGTGCAGAAAT
CAGTTGTAATGTTGAATGCGAATGCGAAAGAGCCCTTACCAAGTGGATTC
ATTCAAATCAAATCGGATCAAGCACCCGGTAAATTAAGAGTTGGAGAACA
TCTTGCTCCGAGACGGATACATGAAGATTTGTACAGGAAATTGAGCAACT
TGAAGAAGGACGTTCCCCAAATCAAaggtattttaaattttccatttaAG
AAGCATCCGGCGAGCCATTTGTACGAAATATCTGCTGTTCTTATTCAGGA
GAACATATCATTCATGAACATCAGATAGTATTTTCTAGATGGAGGATATC
ACCAATAAACAGCAGATGAGAAGGGCGAATGAAAAATGTGGAGCAGCAGA
TGAAAAAGACGGGGGAGGGAGGACTGCATATCCGGAACTGCAGATcgaaa
acactttttctaggaAGAGAGGAAGTAGATTTTATCTGAACAACAGATCC
AAATTTCTAGGAGAAGGGGTTATAAAGTTATCTTGACATTTTAATAGAAC
AGCACATAGATTATTCTAGAATATAGGGTGTACAACAGATCCAAAATAAC
TAGGTTAACTATGGCCGAACAGCAGATATTCaaaaaaaGGATCGCCGGAT
GCCTCTGTCATTTCTTAACATTTGGATTCGAGTCTTTGTGGCTATAAAAT
AAGATCTAAATATACTATACAGAATCCATCCCACCAGATATCGAATCCAA
TTTCACTCTTGCATGCAGCTAAAGTGACCTTAGCCTGGAGACCCATACTA
TGATCTCTTATTTTATAtattgatggcgaaatatatagcatggttagGGT
TGAgggtttgaatttcccagatcctaatgacggttgaaaacacCAAACTC
tgttattctttcactggtgatactttcttagagaaaacgcAAGTTCCGAG
ATTTTAGTGAGGACAGcaataaattcgaatttcccactgtataattttga
ggcagaaatctgcctcacagcatgtacccgtcctgtatatatcagattat
aaaaatacaggacgggtctcctgtctaaaGTGACCTAGAAAAGGAATTGA
GAAAACAAATGCTAGACCAGATGTTTTCAGAATACACTTTCAGTATTATG
TTGAATCTTGCTTTAGATGTGAGCATCCAAAAGAAGCCTCATGGTCCTGC
AATCACATTGACATATCACAAGCCAGGCGAACACCACATCGACATTGACC
TCTCACCATCTCTATTCACCAACGACATCAAAGTTCCAGTAAAAGTTTGG
AAAAGGGAATTTTTCAAGACAAATCCCAAAGTAACAGATATGCTCAAAGA
TGTGCCCATCCTTTTGGTtccaaagaaagaaaattgcTGGTTGATTTCTT
ATGAGAAAATCATGAAAGAGCTGTTCAACAGAATTGACGGCGAGGGGACA
TGCAGGAAAATTTGCCACATGATTCTTAAGTACGATATTTTGAAGTGGAA
ATCACAAGATAAAGAGGGATTTGAAGGAATGTCGACAAATCCAATAAAGG
TTAGTTTAATTCCCAAATGTTTAAACAGGTTGAGCTTTTGTCTTTGCTTA
GCAAGACAGCATGAGTGAGCCCTGGTCGGTTCCGCGGTAGGACTTGAACG
ATGGTACTTTACATCTTTTCATCTTAAACCACTTAGTACACTCCTGCCTT
AGTGAGTTGCAGCCGTTTGAAGATCCGCCGGGGtaaatatgaaaatagtg
aggtttcaaatctcaaaatttcactGAGGTGAACTTTAAAAACCTATATT
TTAATTATGAGTAGGGACAAAATTTCATCTTGGTAATGtgattaagggct
ctgaccatagtgaatttttcataattgccgtgtttaaaatgtgttttctg
actgatgtaaccaacaaaactatggcatgttatacattttctgttagaca
aactattcctgaatctgaaaattcaaaaattgcattgaaaaaatttgacg
aagaagaaaatgaagacttttgcgaggaagagtatttcaactttgaagag
cttagtttcggcgaagaaaaaacattttgaaatttttttcgcagtagatg
gtgtatcttttaccgaacaataaaaattttgcggaaaattgttgtaaatg
cttctttgtctcgaaatcttcaaaatagtggtttctcatcaatttttcat
ctggattttgcttcaaaaaacagtcataacttttgacacatcgttttaga
aaaattttccgcaaaatttaaaatagttcaattctttgcggacagtgtaa
agaaattttgaaacaaaaaagttaattacccattaaaacttaagcacttt
ttgtaaaagagggtgatgcaacatattattaacatctttttaaagttcat
aacgtcatttttgcaattaaattcttaattactcttaagggattcgatta
aaaagcaatttataaaggcaaaaCTTTTAGGTTCAAATACCAAAACACtg
ttatacagggtgtccctaattaaagtatcgagtttgaacatgcgattgag
tagaaaagtttgtgtgtgttatcgctaaaatataagaacgttctccatca
cacaggcttattacaaaaggtagttacaacgtataaattaatcgtaatga
caaagaaaaaagagggagagcttaaaatacaattttgtgaacacgcacat
aaaactttctactcaatcgcatgttcaaactcgatactttaattagggac
accctgtattaaaACACTGGGCCTTAAAATTGGATTCCCATTTGTTGACA
GGCTCACCGATGATACACGGATGGGTGTGTTTGGTAATAGTGTGTAAGGG
TATCATGAGTAGTACCCTCCCGTAACTTCGGATAGACATTATCTAAAGAT
GATCCATCGAGTGGCCTCCAAATACCATAGATTGAATATTTACTTGTTTC
ATTATCTCTCCTTATATTTGCTGAAGCAGCCTCTATAACCCACTCGTTGG
CCAACCGTTTAACTACAACTTTTTCATTTACTTCCAGCACCACCTTTTAT
GGTTCAATGACCAACACCCAGACAATGAATATTGGTCAACTGGAAATTTA
GCAAGATGCTTCAAAGCCATGTTGGAAGATTTGGAGAGTAGAATACGCGA
GAGAAAAATTCCAAATTATTTTGACGACAAAACCAATTTATTGGCAGGGA
AAGATTCCGCAATGTTGAAACGTTTCGCTGACCGTCTGCATGATCGCAGA
GCAGAGGTCGAAAGACTGGAGAAT Coding sequence (CDS) from alignment at sc0000253_pilon:92292..96965+ >XLOC_043308 ID=XLOC_043308|Name=XLOC_043308|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=3100bp|location=Sequence derived from alignment at sc0000253_pilon:92292..96965+ (Clytia hemisphaerica_ch_hm2_pilon)
atggtaaaatgtaAGTGGTGCAAAGAGGAAGTTGAATCACGTCTTCTCGA
GCTACATTACCATCAAATACATTCAGCACTTCCGAAATGTGATGACCCAG
CTTGCAGTGGTCGAGTACGGaggtttaaaaatttgaatagcGTAGAACAA
CATAAAGCAGCATTGTCTAGCCATCGTggtatttcttatatttctgtTTC
TGTCGGTTTCTGTGGTGTTTCTCGGAAAAAGCTGAAGAGTACAAAAGCTG
CGAGAAAACATCAAAACGACTCTTCCAAGCATGCGATATGCGATCATGCA
GAATGCCgaaacaaaaacagaatttttagTAATCGAGCAGCCATGGAGTC
ACATAAAAAAGACAAACATAGGTCATCAAACTTAACAAATCAGAACCGTC
TATCACCacaaaatGtgcaaaaatggcaaaatcttCCAAAGTCCTTTTGA
GTTACTACCAAAAGGAAGTTTTACCCTCAACTGAAGACAGAAAGAGGTCA
AAAAGTCTAGCGAGAGATCACATTCTACGAGAGCTATTGGAAAACATATC
TGACCCAGTAGATAAAAATTTGTACAAGGGTTCACTGGAAAAAGCTGGCA
GCACTTCaacaaataccaaaatcaaccTTGCTGACGAGTTCGATTTTGAC
TTACATTTGAATATCAGAAGCTTCTCTTTGGACAGAAAGTGTCTTCGTTA
CAAATTTACTGCGatggtaaaatgtaAGTGGTGCAAAGAGGAAGTTGAAT
CACGTCTTCTCGAGCTACATTACCATCAAATACATTCAGCACTTCCGAAA
TGTGATGACCCAGCTTGCAGTGGTCGAGTACGGaggtttaaaaatttgaa
tagcGTAGAACAACATAAAGCAGCATTGTCTAGCCATCGTggtatttctt
atatttctgtTTCTGTCGGTTTCTGTGGTGTTTCTCGGAAAAAGCTGAAG
AGTACAAAAGCTGCGAGAAAACATCAAAACGACTCTTCCAAGCATGCGAT
ATGCGATCATGCAGAATGCCgaaacaaaaacagaatttttagTAATCGAG
CAGCCATGGAGTCACATAAAAAAGACAAACATAGGTCATCAAACTTAACA
AATCAGAACCGTCTATCACCacaaaatGtgcaaaaatggcaaaatcttCC
AAAGTCCTTTTGAGTTACTACCAAAAGGAAGTTTTACCCTCAACTGAAGA
CAGAAAGAGGTCAAAAAGTCTAGCGAGAGATCACATTCTACGAGAGCTAT
TGGAAAACATATCTGACCCAGTAGATAAAAATTTGTACAAGGGTTCACTG
GAAAAAGCTGGCAGCACTTCaacaaataccaaaatcaaccTTGCTGACGA
GTTCGATTTTGACTTACATTTGAATATCAGAAGCTTCTCTTTGGACAGAA
AGTGTCTTCGTTACAAATTTACTGCGGATGACGATACCACAAGCTTGAAT
GTGCAGAAATCAGTTGTAATGTTGAATGCGAATGCGAAAGAGCCCTTACC
AAGTGGATTCATTCAAATCAAATCGGATCAAGCACCCGGTAAATTAAGAG
TTGGAGAACATCTTGCTCCGAGACGGATACATGAAGATTTGTACAGGAAA
TTGAGCAACTTGAAGAAGGACGTTCCCCAAATCAAagGATGACGATACCA
CAAGCTTGAATGTGCAGAAATCAGTTGTAATGTTGAATGCGAATGCGAAA
GAGCCCTTACCAAGTGGATTCATTCAAATCAAATCGGATCAAGCACCCGG
TAAATTAAGAGTTGGAGAACATCTTGCTCCGAGACGGATACATGAAGATT
TGTACAGGAAATTGAGCAACTTGAAGAAGGACGTTCCCCAAATCAAagCT
TTAGATGTGAGCATCCAAAAGAAGCCTCATGGTCCTGCAATCACATTGAC
ATATCACAAGCCAGGCGAACACCACATCGACATTGACCTCTCACCATCTC
TATTCACCAACGACATCAAAGTTCCAGTAAAAGTTTGGAAAAGGGAATTT
TTCAAGACAAATCCCAAAGTAACAGATATGCTCAAAGATGTGCCCATCCT
TTTGGTtccaaagaaagaaaattgcTGGTTGATTTCTTATGAGAAAATCA
TGAAAGAGCTGTTCAACAGAATTGACGGCGAGGGGACATGCAGGAAAATT
TGCCACATGATTCTTAAGTACGATATTTTGAAGTGGAAATCACAAGATAA
AGAGGGATTTGAAGGAATGTCGACAAATCCAATAAAGCTTTAGATGTGAG
CATCCAAAAGAAGCCTCATGGTCCTGCAATCACATTGACATATCACAAGC
CAGGCGAACACCACATCGACATTGACCTCTCACCATCTCTATTCACCAAC
GACATCAAAGTTCCAGTAAAAGTTTGGAAAAGGGAATTTTTCAAGACAAA
TCCCAAAGTAACAGATATGCTCAAAGATGTGCCCATCCTTTTGGTtccaa
agaaagaaaattgcTGGTTGATTTCTTATGAGAAAATCATGAAAGAGCTG
TTCAACAGAATTGACGGCGAGGGGACATGCAGGAAAATTTGCCACATGAT
TCTTAAGTACGATATTTTGAAGTGGAAATCACAAGATAAAGAGGGATTTG
AAGGAATGTCGACAAATCCAATAAAGCACCACCTTTTATGGTTCAATGAC
CAACACCCAGACAATGAATATTGGTCAACTGGAAATTTAGCAAGATGCTT
CAAAGCCATGTTGGAAGATTTGGAGAGTAGAATACGCGAGAGAAAAATTC
CAAATTATTTTGACGACAAAACCAATTTATTGGCAGGGAAAGATTCCGCA
ATGTTGAAACGTTTCGCTGACCGTCTGCATGATCGCAGAGCAGAGGTCGA
AAGACTGGAGAATCACCACCTTTTATGGTTCAATGACCAACACCCAGACA
ATGAATATTGGTCAACTGGAAATTTAGCAAGATGCTTCAAAGCCATGTTG
GAAGATTTGGAGAGTAGAATACGCGAGAGAAAAATTCCAAATTATTTTGA
CGACAAAACCAATTTATTGGCAGGGAAAGATTCCGCAATGTTGAAACGTT
TCGCTGACCGTCTGCATGATCGCAGAGCAGAGGTCGAAAGACTGGAGAAT
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000253_pilon | genome | sc0000253_pilon:92292..96965 + |
Properties
| Property Name | Value |
|---|
| Aaloc | 1312-1548:4438 |
| Aaloc | 925-1311:2563 |
| Aaloc | 712-921:1417 |
| Aaloc | 424-711:426 |
| Aaloc | 1-423:1 |
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