|
|
Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000089_pilon:920882..925658+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >XLOC_044114 ID=XLOC_044114|Name=XLOC_044114|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=4777bp|location=Sequence derived from alignment at sc0000089_pilon:920882..925658+ (Clytia hemisphaerica_ch_hm2_pilon)
atggccgacaacaaaaaacaaggaaaatcaagaaagagaaaaacaacaaa
cgaaaagaaTACCAGTTTACAATCAACACTATGGACCTACGAtgagaaac
aaaaatttgtatCAGGTATTTACTTTTActatgaaagtgaaaattatagA
TAGGCGTTTCCTGGACTGAAAGCGAAAGTAAAATTGACCTGTACTCAATT
AATCGAAATATACAAGTTTACGTCTAAACTCTCTGCTCATTCATCAAGAC
AAACCtttttttGCTCAGtcatcacaaatatcttcgttttgcGTCGCCCC
ACAGTCTAGCAAAAAGTTAattcttctttcaaaaaaaagactataatttg
ttcACCTTtattattcttgcagcttcccaacatccaagctctcaaacatc
ataagtcaaatgaaattacttttgatttcccgtagaaattatgcaatgaa
aaatccgggggtcaataaatgaagactttcttttCCGCCCAAGATTTCTT
TACTTATAACAAATTATTACGTTTCaatatatttgttaaatataattttt
gattacaaaaatactttacatattgtatttaaagtttaaaaaagtagatt
ctacttagttctttgttttcatgtctagCCCCCGTCTaaaaagaagtccc
agaatcccgagattttggcagtcgggcgttcaaaccaaaggcgtttttat
ttttccgcctacttacgaatttttcttttaaaaaataggcatttaaaata
tcaagtttaaaaataatagtataaaCCCTTATTTTCTACCGTATAGTCCT
tcttctaaaatgaaaaaacaaaatacactagaaaattacgagtgttatca
agccacccaaaatgaactttcattcgtTGCGCGTCATCGAACTGTTTTAT
CCGTCacgatctattgtcaaccattgtcaaccattgtccaatcccgtaag
cgattgaaTTGCTGTAagtaataatctgagaaagAGAACTTAATAatatt
atgacatcacacaaataaattacgaTGGGAAAGTCCGCGAATCGAAGACA
ACACGCggtcttaacatttttcccTTGCAAGTTTGGGGgaaacgaaagta
ctctatatttttACGTATAgggaagtgtaagaaagatttacaaaatagaa
aagtttcgttttggggtaaagaatcagtattgtgaatttaagcgagtttc
tattttgcaatttttctacagagcgaaataaaaatttttctattgttctt
gctcgattgcctctCAGGATGAGTTCTGTAGGAATGAGGCTACCGAGACA
TAATGTGACAAATTTGCGGGAAAACAAAATTGAGGATTGAGAATTGAGTC
AGTGAGTcagtaaatttgtcggactttttctgtcaatgacgtttccttct
ttcaaaagtttaatTATTGCCAAGTTTTTGTGAGCGATTTTTAGCGCATT
TGAAACaatttgactttgtttatcattacatgcccCATTTTGGGTCAGAG
GTCCAATGTTCAAAAGTCATAATTAAAAACCACCCATAACatgcggttgt
tttggctgctggctggctgacTGCCCAGTTAACACCCATTACCGCCTCAC
AGACCAATTTTAAGAATActcgaaaatttttacgacAGACCAACTgactg
actcactttttagacccaacaagGAGGACgtgaaatgaagatatttgtga
ttgccgccttaggacttgaaaaattaaaattcttccTGTCATGTGTTGGA
TgccaaaaatgcattaaaataTCCTTGGTTTCAGATTTTGTTATTGTAGT
CTCTCTTAAACTTGTAGCACCAAAAACCATTGACTTTagtcaggctagct
ctaaagctttAAAACAACATCTAATAacaaccagaatatgattcttcaat
gggaatcaaaactatacagtaaagtgcacttacaaacatcaataagtcag
atctaacaaaattaataacagcactgtcatcattgacaatagaacaaagg
attttctgtcaagagccttgtaaacattccaacaacttccatggTAATGA
TGTAACAGCTACTAAGTCTACCACTTTAGTGCGGTCtcaggattgagccg
agaacgctcacAGAATGCCCGCAAGCTCCCGCTCAGGTGacaaacttcaa
tctgtcaatcattttctcaagcgaagagtacgcaaagcaattctagcttt
acgatagtgccgcagaCAGCCgcagatcatcagtggatagcattcaatta
ttattatccctttattttcaaaaaagttgtatttttcctactctattcac
atactgaatttgaaagatcttctatgtgacgtttttttgcaaacttcaaa
actgatttttgtctcGCTTTTGCGGAAATTTAGCTTAAGTGCTtacgtgc
agcatagggtacaaagtccaaatatgagtttcctgtaatttttttatgaa
gagttaggtctataatATAAGTGTATTAAAAGTTCTTTAGAAACATGTTG
GAAGTTTTCACAGATAATCAAGATTCTTTTCTAAGCAAATTCTGGGTTGC
TCAAAATTCTTCAACAGTTGTTAAACATCTGCCGATAAATGCTAAGAAAA
AGCACaacaaatttcttcctttgatTTGCTACACTTTGTACCATTCTTCT
TTGTGACTTATGTGTAAAAACTTTATTAACAGATCATTAATTTCATATTT
GATACTAAACTTGGATTTGTTGTGAACTCGGTCAATTGGATAACAAAAGG
AAAATATAACAGATTCTTATCAATATTTCTTTTAGATAGGAACATTTCTT
TCAGATAGGAATATTTGGCCAGTTCCTGTATGCGGCCACAATCAAAAAGG
TCATaaataatttcataaaaaaattacatttgcCTCtttttttGAATATC
TACCCCAATGGCTAGCCACAATGGCTGAGCTATTCCTAGCATCAGAATAG
TTTTGCAAAATACTTTTGATTGTGGTAGATTTTAGCAATGCAAGATCTCC
TTTCCTTGCAAGTAGATTAAATAATGGCAGTCTGTCTTGATTTGCTTTCT
CTTTTACAGTActtatttcttttgaaatatctagttttccaatttcaaaa
tcttttcaaaatctttaagaAATTTCAGTTGTCAAAGTTGGATCCAACTC
CATTTTCTgttaacctttttctttattaacAATGAGTCTAAATATGTACA
CAATTTGATATCCACTAATTCTCCTTGAGCATACTATATTCATTCAGttg
gtagatttattgatgaccTTTGCGCTATTAATGATTTTTTCTCATGTTAT
AATGATTATCCAGAGGAGCTACAATAAATTGAAAGTTGAACATTATGTAA
CACATGCAATATTTTTTAATCTTGACATAAAcattgaaaataacatcttt
cACTACAAGTTGTTAACAACAATTCTCGTTTTGAGAATGCCACATAAGTA
TAGTAATTTACCATAACATGTTTTACAGAactaattgatttttcaagaaa
aattgccttttgtaaaaaagccccaccgaaaatacaaaaagaaaaaccca
aagtcccacctttacatttgaaaacaaaatcaacaaaccCACCCAGAGTG
AGAGGGGGGTGTACACTATAACTCTTTATGATATTCAATTTTAGGATGCT
AAAGTGGGACCTAAAAACTTTCccttaattttttaaaaaagccaTAAAAG
AACCACTTGGATTTAGATCCCGAATCTGATTCCGAGAAAGTCACCTCACT
TTCTCACTTTCAACTGTCTGTTTCTTATCACCCTTTACTGTTTTTTATGC
AGCTCTTTGTAAAGGACCTCCATATCGACATGAAAATGGAAGTATCAACT
GGATGCAACTTAAACGATTTATTGGAACCAAAACATTGCAAGAAGTTAAG
CATTTTGCAAAGACGTTTCATGCTATGGAGCATGGGACAGCTTATGAGGA
ATTCTCAACCAGAGCTGCTATTGATGTCTGGCGTCAATTAGCTGAAAAGT
CAAAAGGAGAAGGTATTGCACATTTCATTGATTGTAGATTGTGGGTAGTC
ACCTGTAGTCACTctgtaatttcattgtttagGTTGAGTGCtaaatcagc
attttttgtcaaaaacacTCCTAGAAGCTAAGGAGATGCCTTAGCCattc
ttgtaatttttttgttctgtTTGACTGCATGATTTAGGAGATAACATTGC
AGATGTTTGCATTCCACAAGCATTAACTGTGGCAGCTTTGGAGCCCATCA
ACGCTTCTCCTATGGGTGAAGGTTCAACATCTGCAACATCATCATCAGCT
CCAAGTTATCGAAATATTTATACTTACCTGAGCGCAATCACAAGAGGTGC
GGAAGGGCCTGTGCTCAATTCTTCTGAATCTGCTATTGTTCTGAGCATGT
TGGAGGATTTGATTCTAACTTTGTCAAAATCACAAACCCTCATTCAAAGA
GAATTTCTACACTCTTCCTACCCTGAACTTCGATCTATCTTGCAGACACA
AGAAGGGCAAGAAGCAAACTCAAGAAATGTTCATTTCAATTCAATCAATC
CTTTTGGTGTTCCCTTTGATATTTTAGACTTTCAGCTATTAGAGCAATGT
ATGGAAAAAGGGAATACTGCAGCTGTTGACAGTGAAAGTGCAATCGAGAA
AAGACCTGCTTCAAGGCAATCAAAAAGGAAAACTAAAGCAAATGACTCTG
ATGCACAGAAGTCTCCAGTACAAACCAGGTCTAAAAGAAAATCATCTGAA
GAAAAGGATACAGACAATGGTGTTTAA Coding sequence (CDS) from alignment at sc0000089_pilon:920882..925658+ >XLOC_044114 ID=XLOC_044114|Name=XLOC_044114|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=1830bp|location=Sequence derived from alignment at sc0000089_pilon:920882..925658+ (Clytia hemisphaerica_ch_hm2_pilon)
atggccgacaacaaaaaacaaggaaaatcaagaaagagaaaaacaacaaa
cgaaaagaaTACCAGTTTACAATCAACACTATGGACCTACGAtgagaaac
aaaaatttgtatCAGatggccgacaacaaaaaacaaggaaaatcaagaaa
gagaaaaacaacaaacgaaaagaaTACCAGTTTACAATCAACACTATGGA
CCTACGAtgagaaacaaaaatttgtatCAGCTCTTTGTAAAGGACCTCCA
TATCGACATGAAAATGGAAGTATCAACTGGATGCAACTTAAACGATTTAT
TGGAACCAAAACATTGCAAGAAGTTAAGCATTTTGCAAAGACGTTTCATG
CTATGGAGCATGGGACAGCTTATGAGGAATTCTCAACCAGAGCTGCTATT
GATGTCTGGCGTCAATTAGCTGAAAAGTCAAAAGGAGAAGCTCTTTGTAA
AGGACCTCCATATCGACATGAAAATGGAAGTATCAACTGGATGCAACTTA
AACGATTTATTGGAACCAAAACATTGCAAGAAGTTAAGCATTTTGCAAAG
ACGTTTCATGCTATGGAGCATGGGACAGCTTATGAGGAATTCTCAACCAG
AGCTGCTATTGATGTCTGGCGTCAATTAGCTGAAAAGTCAAAAGGAGAAG
GAGATAACATTGCAGATGTTTGCATTCCACAAGCATTAACTGTGGCAGCT
TTGGAGCCCATCAACGCTTCTCCTATGGGTGAAGGTTCAACATCTGCAAC
ATCATCATCAGCTCCAAGTTATCGAAATATTTATACTTACCTGAGCGCAA
TCACAAGAGGTGCGGAAGGGCCTGTGCTCAATTCTTCTGAATCTGCTATT
GTTCTGAGCATGTTGGAGGATTTGATTCTAACTTTGTCAAAATCACAAAC
CCTCATTCAAAGAGAATTTCTACACTCTTCCTACCCTGAACTTCGATCTA
TCTTGCAGACACAAGAAGGGCAAGAAGCAAACTCAAGAAATGTTCATTTC
AATTCAATCAATCCTTTTGGTGTTCCCTTTGATATTTTAGACTTTCAGCT
ATTAGAGCAATGTATGGAAAAAGGGAATACTGCAGCTGTTGACAGTGAAA
GTGCAATCGAGAAAAGACCTGCTTCAAGGCAATCAAAAAGGAAAACTAAA
GCAAATGACTCTGATGCACAGAAGTCTCCAGTACAAACCAGGTCTAAAAG
AAAATCATCTGAAGAAAAGGATACAGACAATGGTGTTTAAGAGATAACAT
TGCAGATGTTTGCATTCCACAAGCATTAACTGTGGCAGCTTTGGAGCCCA
TCAACGCTTCTCCTATGGGTGAAGGTTCAACATCTGCAACATCATCATCA
GCTCCAAGTTATCGAAATATTTATACTTACCTGAGCGCAATCACAAGAGG
TGCGGAAGGGCCTGTGCTCAATTCTTCTGAATCTGCTATTGTTCTGAGCA
TGTTGGAGGATTTGATTCTAACTTTGTCAAAATCACAAACCCTCATTCAA
AGAGAATTTCTACACTCTTCCTACCCTGAACTTCGATCTATCTTGCAGAC
ACAAGAAGGGCAAGAAGCAAACTCAAGAAATGTTCATTTCAATTCAATCA
ATCCTTTTGGTGTTCCCTTTGATATTTTAGACTTTCAGCTATTAGAGCAA
TGTATGGAAAAAGGGAATACTGCAGCTGTTGACAGTGAAAGTGCAATCGA
GAAAAGACCTGCTTCAAGGCAATCAAAAAGGAAAACTAAAGCAAATGACT
CTGATGCACAGAAGTCTCCAGTACAAACCAGGTCTAAAAGAAAATCATCT
GAAGAAAAGGATACAGACAATGGTGTTTAA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000089_pilon | genome | sc0000089_pilon:920882..925658 + |
Properties
| Property Name | Value |
|---|
| Aaloc | 415-918:4274 |
| Aaloc | 328-411:4190 |
| Aaloc | 118-324:3805 |
| Aaloc | 1-114:1 |
|
