TCONS_00014228 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00014228
Unique Name	TCONS_00014228
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	983

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000183:120268..123807-

transcript sequence

>TCONS_00014228 ID=TCONS_00014228|Name=TCONS_00014228|organism=Clytia hemisphaerica|type=transcript|length=983bp
TATAATATTTCCTGAAGTAAAAAGATGTCTAATGATATATTGTATGCCAC
AGTTGCAAGGGGCACCACTGTGCTGGCAAGGTATGCCTCTTGCAGTGGAA
ACTTTCAAGAAATCACAGATCATATCCTTTCAAAGATTGGACCAAGCGAT
GATAAAATGACATACACACAAACAGGGTACCTGTTTCATTACATTGTCCA
AAACAGAATAACGTATTTGTGTATTACAGAAGATgGATTTGATAGATCCA
AATCATTTGCATATCTTGGAGAAATTGTCAGAAGGTTCACCAAAACATAC
CAGAATCGGGCCGATACTGCGCTACCCTATGCAATGCAGAGTGAATTTTC
ACGTGTTTTAGCCAGTGAGATGCGACATTTCTCGAAAGGAGATTCTGGCA
AAATGCAGAGAGTACAGGAAGATTTGAGTGAATTGAAAGGGATCATGATC
AATAATATTGgcCATGACTTTTAAGAAATCAAGCAGAACTCTTGAGAGAA
CaatgtttatgaaaaatgtgaaaattacaGTCGCCATCGTATGTGTTATA
TTGGTATGTCACTTCGCattcttttgaaatatatttcaaataaCTATTTA
TCTGATTCTCGTTGcattttatctttgtttttggGCCTAAATCTGACAAG
ACTGATAACGGTTTGAAAATGCTAATTTTAAAAAGGAAAGCTAATAAAAA
GGCATCGTtaattaatttcttttattcGTTACAGgtatttattttaatta
ttgtaTTTGCTTCATGTGGAACCAATTGGAGTGATTGTGGCAAAAGCTAA
AAGATAAAAGGTCAACTGGTTGCAATCTGGATTCTCTCAGATTGCTTATC
AAGTTTTTAGTTGGTATCCAAAATTGCATATCTTNTATATTTTCCAACag
tttctccatcttatttgcacgtcatgaacatttccaacaccagcaaactc
aatgcagacccaagttctttgagcaactagtct

Run BLAST on NCBI

transcript from alignment at sc0000183:120268..123807-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00014228 ID=TCONS_00014228|Name=TCONS_00014228|organism=Clytia hemisphaerica|type=transcript|length=3540bp|location=Sequence derived from alignment at sc0000183:120268..123807- (Clytia hemisphaerica)
TATAATATTTCCTGAAGTAAAAAGATGTCTAATGATATATTGTATGCCAC
AGTTGCAAGGGGCACCACTGTGCTGGCAAGGTATGCCTCTTGCAGTGGAA
ACTTTCAAGAAATCACAGATCATATCCTTTCAAAGATTGGACCAAGCGAT
GATAAAATGACATACACACAAACAGGGTTAATATTATTATTATATACCTT
TTAAGTTTTTAATTCCCAATTATTCTACCAAAAAAAAGCCTACCATTCAT
CTTTCACAGAATTGTTTCGAATTTGAATTACTATATACTCTTGTCTCTCG
CATAGAAGCGGGGGGGATGGAATTAGAGGGGGGGGGGTAATTTGAAGACA
GAATTTTTTTTAACTGATATCAATTTCAACAACAAAATTGAAACTTTAGC
AAATGAACACATAAAATAAGAACCAATATCCTAACAAAAAGGAAAATTTT
AACAAGTTTAAGGCAGGGGGACGTCTATTCAGGAGACAAGAGTACCTTTT
TAAAGTTTTAAACCCCAACAATTCTACCAAGAAGAAAGCCTATCATTCAC
CTTTCACAGAAGTGTTTTTAATTTGAAATCAAAAACTTGTTTCCGTAGAA
TTATTTTCTCCTTGAAAATTATTGTTTATTTCTAATTTCTTCTTATCAAA
TTATTCTTTTTAGGTACCTGTTTCATTACATTGTCCAAAACAGAATAACG
TATTTGTGTATTACAGAAGATGTAAGTAATGAACTCTTTACTGCTCCAGC
TGAACTTATCTATGTTCATGTTCTTCCCGAGGGTACAAAGAATAATTTTT
TCATGAAATACCAGCTTACTGGCCAAAAGTTTTCCAAATACTGGTTTAAA
ATGTTATGACAAGGGGCCTGGAATTACCGTGATATTTTTTCCCGACTTAT
TTTTCTCCGAGTTATTTTTCCAAGTATTTTTGCATGTGACGTCAAAATTT
CAGTTTTGTGATGTCATTATGACGTCATGTCAGTGATAACTCGAGGTTTT
TATGAGCCTTTAATTTTTCGAGTTATATTTGGTGTTTTAAACTCGGTTTT
TGGACCTGGAGTAAAACTGTTTTTTTGGCATTTTCTCGAGATGATTTTTT
GCTCAAAGATGCGTATTAACAATGCATGAGAAAAACCGAGTTAAGATTTG
TGTGATGACATCATTATGACGTCACAAAACTGAAAATATGACGTCACATG
CAAAATAACTCAATAAAATAACTCAGGAATTCCAGGCCCCTTATGACAAG
TACCGAAAGTTTAGCCTTTCAAAACCACCAGTTACTTTCCCTCAAATACA
GAAATACCAGACTCTTGGAAGCCCCCTGTTATTGTTAAACCAGGTTAAAC
ACAAAAGATATTGAGTACTTTGTTCACTAAAACTTTCTTTTAATGTTTTT
ATGTTTAGGGATTTGATAGATCCAAATCATTTGCATATCTTGGAGAAATT
GTCAGAAGGTATCTAATGTTTTACTACTTCATGGTTGTCCTTAAGGGGGA
GGGGAGTATTTTGGGCATATTTATCTGAGGCTGAGATACAAACGATTCTA
TTACAAGGAATTGTAATCATCTTATTTTGAAGATAAAGGGAATCTATCTA
TCAGATCACAATGTAAATTTTTTCCGTTTTCAAATTCAAAAGCAAAAAAG
CTTTATTGCTTTCAAATTCAACTTGTCTTGTCTTTTGCTTTTTATCATGA
AACTTAATCTTTTACTTAATCAGGTTCACCAAAACATACCAGAATCGGGC
CGATACTGCGCTACCCTATGCAATGCAGAGTGAATTTTCACGTGTTTTAG
CCAGTGAGATGGTACGTATTTTCTTGTTTTTGAATATGTTTCACTCAAAA
TATCTATTCATGGTTTACTGTCTTTTATTTGAACTGGATAATTTTTTATA
TCATTTGAGCAGCAATGGTCACCTAAATCCAAAAAATGAACGGACCCATA
CTGTACATAATTTTTGAGCCTACCTCCGGGTACACCGGTGAAGGTCCTAT
AAATTAACCGATGTCCGTCCGTTTGTCCGTTCGTCCGTCCGTCTGTTACC
AGCTTTTCTCAGGATTGGCTAATTAGTTTTTTCTGATTTTTGGCACATTG
ATGCAAAATGGCAATGCCCAAAATGTGACAGAGCCCGATTTTCGAAAAAT
ATGCCGGAAAAACTGTTTTTTTGGCATTTTCTCGAGATTTTATCATTAGT
CTTTTCTGATTTTTTGCACGAAGATGTGTATTAACAATGCCCAAAACATA
GCCGAGTTTGATTTTTGAGAAATTTTTTTTTCCTGCCGAAAATACCGGAA
ATTGCCGTTTTTGCAGATTTTTGTTGGATTTTTTCTTATTTTTCTATGTT
TTTCACACAAAAACATTATTGATAACAGTGCTCATCATCAAGCATGATTC
AATTTGACTGATTTTTTTCATTTTTCTCCTCGCATTGCTATCTAACTTTC
ATCATCAGGTAGGTCCATTCAGCATCTAGCTTGTTTTCATTTAAGCGACA
TTTCTCGAAAGGAGATTCTGGCAAAATGCAGAGAGTACAGGAAGATTTGA
GTGAATTGAAAGGGATCATGATCAATAATATTGGTAACAGCTTTCTTTTC
TTTGTTGTACAGCTTTACGTAATACTTTATTTTCTTGAAATTAATTTGAA
ATATGCTCGGTTATGATCAGCAATGGACAAAATTGTGTTCTGTGTATTAA
TAGAAGCTTTGACATCTTGGTAAATCTGGTAAAAGAACTGTTTTCATGAA
GCTGTATGTATCCATTTATGTACGTATATCACATGGTTTGATAAATTTAC
CACACCTACACATTTCTTTTCCTCTCACCAGATTCAATAGCACAACGAGG
AGAAAAACTAGAGCTTCTTGTTGAAAAGACTGATGACCTAAGTACTTCTG
TAAGTGAATGAGGTTTATCAAAGTCTAGTATTTGTGTGTGTGATGCCTTT
AACCCTAAACTGTTATCTAGAAATTTATTACAATTCGATCACCATTAAAC
AAATTTTCTTATTTTAGGCCATGACTTTTAAGAAATCAAGCAGAACTCTT
GAGAGAACAATGTTTATGAAAAATGTGAAAATTACAGTCGCCATCGTATG
TGTTATATTGGTATGTCACTTCGCATTCTTTTGAAATATATTTCAAATAA
CTATTTATCTGATTCTCGTTGCATTTTATCTTTGTTTTTGGGCCTAAATC
TGACAAGACTGATAACGGTTTGAAAATGCTAATTTTAAAAAGGAAAGCTA
ATAAAAAGGCATCGTTAATTAATTTCTTTTATTCGTTACAGGTATTTATT
TTAATTATTGTATTTGCTTCATGTGGAACCAATTGGAGTGATTGTGGCAA
AAGCTAAAAGATAAAAGGTCAACTGGTTGCAATCTGGATTCTCTCAGATT
GCTTATCAAGTTTTTAGTTGGTATCCAAAATTGCATATCTTNTATATTTT
CCAACAGTTTCTCCATCTTATTTGCACGTCATGAACATTTCCAACACCAG
CAAACTCAATGCAGACCCAAGTTCTTTGAGCAACTAGTCT

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_007958	XLOC_007958	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000183	supercontig	sc0000183:120268..123807 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.51942	0	65.2277	73.8559	10.8233	6.89621	9.06591	9.24895	15.1067	14.0538	12.5565	11.8282	11.7884	10.7096	11.6508	10.5086	9.91682	8.74035	8.478	15.2043	6.63894	6.1489	10.3457	9.49501	2.68166	4.1855	6.30258	6.14623	8.38048	7.36859

Blast

[Close]

BLAST of TCONS_00014228 vs. Swiss-Prot (Human)
Match: VAMP7 (Vesicle-associated membrane protein 7 OS=Homo sapiens GN=VAMP7 PE=1 SV=3)

HSP 1 Score: 171.785 bits (434), Expect = 3.938e-51
Identity = 79/142 (55.63%), Postives = 106/142 (74.65%), Query Frame = 1

Query:   37 ILYATVARGTTVLARYASCSGNFQEITDHILSKIGPSDDKMTYTQTGYLFHYIVQNRITYLCITEDGFDRSKSFAYLGEIVRRFTKTYQNRADTALPYAMQSEFSRVLASEMRHFSKGDS-GKMQRVQEDLSELKGIMINNI 459
            IL+A VARGTT+LA++A C GNF E+T+ IL+KI   ++K+TY+   YLFHYI Q+RI YLCIT+D F+RS++F +L EI +RF  TY +RA TALPYAM SEFS VLA++++H S+     K+   Q  + ELKGIM+ NI
Sbjct:    3 ILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFNFLNEIKKRFQTTYGSRAQTALPYAMNSEFSSVLAAQLKHHSENKGLDKVMETQAQVDELKGIMVRNI 144

The following BLAST results are available for this feature:

BLAST of TCONS_00014228 vs. Swiss-Prot (Human)

BLAST of TCONS_00014228 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
VAMP7	3.938e-51	55.63	Vesicle-associated membrane protein 7 OS=Homo sapi...	[more]

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TCONS_00014228 (transcript) - C. hemisphaerica