XLOC_036520 (mRNA) -

Overview
NameXLOC_036520
Unique NameXLOC_036520
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000028_pilon:2124350..2129764-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_036520 ID=XLOC_036520|Name=XLOC_036520|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=5415bp|location=Sequence derived from alignment at sc0000028_pilon:2124350..2129764- (Clytia hemisphaerica_ch_hm2_pilon)
CCCAGGGCTAGAGGCCAAGCCAAGGTAAGGTTTTTCTGTTTTCTTAACGA TTTTTATCTATTTTGGTCACCTTTTACTACAAACATAGTTACTAATCTTT GAAATGTAAGAGCTGTAACCTTTACTTTTACTCCATTTTTTATTATTACC TGATTTTATCAACCTTTAAAATCTTTGTCTTTTGGAAGTCACTCCTTGCT CTCCCAGGGTTCATGGGCAATTCGTAGAAATACTGGTCAAAATCGAAAGT GTACTTCCTTCCCAAGTCTCTGAAGGCATACTCCAGCTGGAAATGGCGAT ATCTATCCTTAGCACAAAAAAGACAAAAAGTTAGCTCCATGGTTAGCTGG ATAAGGTTTAATGTTACTGAAAATGTAGTCGAAACTGTTTGTTTCTGTTC ATTATCTCAAAATTTGGTGGTCTCAGAATTTCGATAATTTTAATATTCAG ATATAAATGTTTTTTTCTTTTATAAGCATAACATTTATAAGCATATACAG GCTCAGTTTTTGATACCAAAACAAAGGCTCTATTTAACTGTTGTTAAAAG TTTTGATGTTTTTTAAAGATCAGTAAATTTCGCAACGCTCGCAACGGATT TTTCCACTTGAGTAGTGCTCCGTTCGATCGCAACGTTCGCAACGCACTTT TCTCCATGAAATATTTCAAAACCTTTAAATCCTTCAAATACAGCCCAATT AGGATACGTTTTGCGAATCTTGGTCAAAAATATGAGAGAATTTAGCCCTG TGAATTGCCAATTATGCCGTGATTATGCCCCAGTAAGGCTCAATACTTTT ACAAAGAATGGTTTTCTCCCGGGGGGGGGGTACTTAGGCAAAAATGGGTG CTGGGTATGTGCGTGCCTTAAGGGTAGGGTTTTTCACCCTCCCAAAGTCT CTCTAAGGGTTACCAAAACAACAAAAGTCAAAATCAGTCTCTCTAAGGGT CGGTTTTTTCACAAACTCGGGTCAAAGAAAAGTGAAAAGTCAAAAAAGTG AGAACATTTTTAAAAAAAGTGAGAAAATTTTTCAAAAATTAGAGAAATTT TTCGAAAATTGGAGAAATTCTTTTAAAAATCGAATTTCTTTGGTCCATTA TAGAAATTTTTTGTGAAAAAGTCTCTCTAAGGGTTGGGTTTTTCTACACT GAGTCTCTCTAAGGGTCACCTTTTCACCAAAATTCAGTCTCTCTAAGGGT AAGGGTCCAGAGGTCTGGCACGCACATACCCGACACCCATCAATCCTAGT ACCCCCCCCCGGGGGTTTTCTCAAAAGTGTTTAAATTTCTTCCAGCTGGT AAATATTTGCAAATTTTTGGATCGTGGGTAATGTACTTCACCAACACGGA TCTCTCCCATGTTTTTCATAGCAAGTTTGGACAGCAAAAGAGTACCATTT TCTTTCTTTTCGTCTCAAGACCTCTCCTATAGATGAAAATTGAATTTTAG ATTCGTTAAGAATACGGAATCTTTTTTGTACGACGAAAACTGGTCAAATT TGACAAAAAGAATTAAAGAAAAAATGTCCTTGTCTCGGTCCTTTTCTCAG TCCTGTATATTTTTAATTTTTTTGATAATTTTTGAAAAAATCGACTGAAG ATTTTGCAATTGTGCACCATTACGAATTGGCATCTTTTCCCAAAATGAAG GGTCTCTGTTGAATTATTTTTTTCACTTTCAATTTTTTAACTGGATTATC CACTGGGGTGGATTACAGTAGCGGCCTGGCTTAATTTTCTTGGTGGTGCA AACTATGAAATTGGCGCCCCTGGTATTTTTGTCCTTATTTGCGCCCTCCA TCATTAAGTGAAAATACTAAACTGTAACAGCAGTGACTGGTTGAAAGTAA CGCCCCTATTCTTTTAAATATAAATTTTATACCTGGTAAGTCGATTTGGT CTATATTTTTGCTTTCTAAAACTCTTATCAAAAAAAATTACCGGATAATC TTTAAACTTTTGCGTCGCTGGTCTTACTTTACTGTCTATTAAAGATCAAT GGCTGAAAGAGGCAAAAAATTCACAAGTTGGGAGGAAGGGTTCCTTGTAA TTTTGCGCCGCAGGCAAAAAAATTTGGTGTAAGAAAGGTCAAACAGCTTA AAAGATCTTCTAAAACGGAGAAAGTTAGTCAGTATAAGACCACAAAAGCC ACAGCGAGAATCAACAAGTTTTGATCATTTTGGCAATCTCTCATTTTGGA GGTGAGCATTCACTTTAACCCCTGGTGGATACACAACACTTCTCTTACTT CTGATTCAATTATATTGATAGAAGTTTTGAAAAAATTCTCCAAAAATTCA AGAGAAATGATGTAAGAAGGTAAAGTAAAGCGCCGCAGGCGAAAAAAATT AACATTGTACTCATAGAAGGCGCTATAAACATGCCGAAGGGCGCCAAATT GCCCAATTAAACATCAAAAAAATTTTGGCGCCCCCTTAAAAAGCTCTTTT GGCGCCCCTCTCAGATCTTTCTGGGTGGTGCACTGCACACCCTGCACCCC CTGCCAGGCCGCCACTGGTGGATTATCGATATAGGGGTGTAAACAACGCA CGATAAACAATTCTAAATCCCTTTATTTTGACCTGACAGCGAAATGGATG CTTCTGTTGTGACTCCAATGATCACAGAAACATCAACGAATGACGAGGTT TATAATTTCATACAATTACAACACACTTCAAATGAAGCTTCACAACCATC AGAAATGGAATCAACAGTTCAAACAGAAACTATGGAACACGATTCTCAAG TGATCGAACCTCGGAAAGAAATAGGAACTACTGCTGTAGACCAAACGAAT CAATTCGATCAAAACATCACACATATGACACAAAGTAAGTTCTATTTTAA AATAGTATCCTGTCATTTGGCTGAATTCAAAAGTACCTTTTGCTTTTAAA TTGAACTGTGATACATGGAGTGTATATGATACATACCTATGACTTTATCC TGCAAAATCTTACTTTAACACACCCCTTCTCACAGACCCGGTAGGATTGG GATTTATATTCCCATGTTTTTTTTATGGCTGGAAATTTAAATTCCATTGC TTTCGAGTCAGAAAATTCAGTGGGCATAGCGTCAGCCCCCCCCCCTTAGT TTTAAGCCCCCCCCCCCCCCCAAGGCTTTCGACCCTCGACCATTTGTTCC ACAAAAAAAAGGGTTATTCAATGTAAATTGTGTTGCAGTTCGAAGGTTAA GATAAAACATTTTGTTAACTAAATAAAAACATTGCGTCGCAGAGGAAAAA TTTTCAGCTTCATGAGCTTTAAATTTGAGTAATTGAATCCAACCATTTTA AAGATGAAGTTTTCAGCCCCCACGTTAAATGATGAGATTTCAGCTCCCCC AAGTACATAGGACCCCTCGAATATTTGAAACATCTTCAGCCACCCTTTTT TGGCTTTTTGGAGGGTGTGACCTCCCCCCCCAGCTAGCATGGGGGCTGAC GCTATGGTGGGGATGGAAAAATAGCAATATTTGGTAGTGAAGATTTGGTT ATTTGATTACTTTCAACAGGGGCAAAAATTGTAGCATGATTTTCCAGTAG GGACAATATTTTGTCCATTTTTTCCAGTCGAAGGGGTTTCCCCCGTGTCT GTGGAGAAGAAATAAAACAATTTTCTAATGGGTAGGAAGTCCTACCGATT ATGTGACAAAAAGCTTTATAACTAAGTCTCTGTCTTTAATCTTTTAGCTT TTGAACCTGTGAATTTGTACGTGTGTGACAAATGCAATCGAACATTCAAA CAAAAATCACGATACGAGCGTCATATACAGAACCATCCTAGTGAGAAACA TTATCTTTGTGAAACGTGTCACAAGACCTTCACAAGAGTGTCACACTTAG AGAAACACATTAAAACGCACACTGAAGAGAGAAGTCATTTATGCGAGGTG TGTGGCGCCGCTTTCATTCTACCACACCACTTGGTAAGACATATGCTCGT TCACTCAGGTGAGAGACCTTATCAATGTGAAGTATGTAATAAAACGTTCA CACGGAAAGCTGGACTCACGCAACATCAACATGTTCATACCGGTCTACGT CCTTACGGTTGTGAGCATGAGAACTGTGGTCGATATTTTACTGATAAGAC TACTTTACGTCGACACATGATGACGCACTCTAGTGAAAAACCATTCGTTT GCAAAGAATGTGATAAAACTTTTCGGACAAAATCTGCATGTCGGAAGCAT TATTTGCGACATTTTAAAGATGGTGCATCATATAAATGCGGTGTTTGCGA AGAAATGTTTAAGGATGAAAGAGAGTATAAAATGCATTTAGAAACACACG ACGAGAAGCAACGTACCGGTGCTCACCGATGTGGTTTCTGTTTGCGTGTT TTCAAAAGTCAAGAAGATCTGAATGCTCATGTACCGTTACACGAATCGGG TCTTCAATACACATGCGAGCGATGCTCTGCCAGGTTTTTCACACAAGTTG ACTTCTTGAAACACACAGCTAAACATTTTGAAGAATCTACTTTAGCTGTT GAGCAAAATATACAGGAACAACACCACGTATCTACCGCAACCAATGCTCA ACCAAAGGAGAACGAAGTACCACAACAAAAAGACGCATTACCGAATCCAC AGAATACTCTCCAAGAGGGTAACGAAAATGTAAACAAACTACTGGTCGTC TTACAGCTTCCACAGTCTGCATCCAACCTCAGAAACGAACAAGGTGCGCT ACAAGTGGACAGCATTCAACAACTTCTCGGTACCGTAAGAATTGACAAGT TAGTTGTCACCACTGATCCCATTTCTAATTCATCACAAGCAGTGGCTTTA CAATTATCACAATCTCAACAACAAAGTATTCAGCAAATTCTACAAACAAC CCATATCAGACGACAAAATCCACCTATTTCAACTCTGGAAAGTCTCAACA AAGCCCCACTAAATGCTCTTGAGACACTTACATCCACCTTGAACGAGGCT GCAACGTTTCCTGATTTGACATCACACGATACGATGGACGCTCCCGATCT TTCACAGCACGTTCAGTCATCCTTTGTCCTCAAGTCACTCTCACATCAAC CGCCCCCACCGCCGGAAAGCAAATCAGTCTCTCAATATCTCATTGTACCA CCAACAGGCCCTGGGTTTACACCAATTGTTAATTCGAAGATCAAAATTAT CCACAAACCGCCAGAACCGATCGGAAATAACTCTGTTTTCACTAGACCAC CTCCGAATCTTCTGCAAAACAATGAACTGGTCCCAACCCATCCTTTAGAA CTGATCGTAAATGATGAAGATGTTCCAGAAACAGGTGTCAAACAAGGGGA TTCTTTTGAACCAAATACGACTTCCTTAACCATGGGTTCTCTTCATCAGA CTCCTGAAAATTCAAATACAGAAGAGAAAGTCAGGAATTCATCCTCGTCC AATTATTTTCAGCAT

Coding sequence (CDS) from alignment at sc0000028_pilon:2124350..2129764-

>XLOC_036520 ID=XLOC_036520|Name=XLOC_036520|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=3978bp|location=Sequence derived from alignment at sc0000028_pilon:2124350..2129764- (Clytia hemisphaerica_ch_hm2_pilon)
CCCAGGGCTAGAGGCCAAGCCAAGCCCAGGGCTAGAGGCCAAGCCAAGAG
CGAAATGGATGCTTCTGTTGTGACTCCAATGATCACAGAAACATCAACGA
ATGACGAGGTTTATAATTTCATACAATTACAACACACTTCAAATGAAGCT
TCACAACCATCAGAAATGGAATCAACAGTTCAAACAGAAACTATGGAACA
CGATTCTCAAGTGATCGAACCTCGGAAAGAAATAGGAACTACTGCTGTAG
ACCAAACGAATCAATTCGATCAAAACATCACACATATGACACAAAAGCGA
AATGGATGCTTCTGTTGTGACTCCAATGATCACAGAAACATCAACGAATG
ACGAGGTTTATAATTTCATACAATTACAACACACTTCAAATGAAGCTTCA
CAACCATCAGAAATGGAATCAACAGTTCAAACAGAAACTATGGAACACGA
TTCTCAAGTGATCGAACCTCGGAAAGAAATAGGAACTACTGCTGTAGACC
AAACGAATCAATTCGATCAAAACATCACACATATGACACAAACTTTTGAA
CCTGTGAATTTGTACGTGTGTGACAAATGCAATCGAACATTCAAACAAAA
ATCACGATACGAGCGTCATATACAGAACCATCCTAGTGAGAAACATTATC
TTTGTGAAACGTGTCACAAGACCTTCACAAGAGTGTCACACTTAGAGAAA
CACATTAAAACGCACACTGAAGAGAGAAGTCATTTATGCGAGGTGTGTGG
CGCCGCTTTCATTCTACCACACCACTTGGTAAGACATATGCTCGTTCACT
CAGGTGAGAGACCTTATCAATGTGAAGTATGTAATAAAACGTTCACACGG
AAAGCTGGACTCACGCAACATCAACATGTTCATACCGGTCTACGTCCTTA
CGGTTGTGAGCATGAGAACTGTGGTCGATATTTTACTGATAAGACTACTT
TACGTCGACACATGATGACGCACTCTAGTGAAAAACCATTCGTTTGCAAA
GAATGTGATAAAACTTTTCGGACAAAATCTGCATGTCGGAAGCATTATTT
GCGACATTTTAAAGATGGTGCATCATATAAATGCGGTGTTTGCGAAGAAA
TGTTTAAGGATGAAAGAGAGTATAAAATGCATTTAGAAACACACGACGAG
AAGCAACGTACCGGTGCTCACCGATGTGGTTTCTGTTTGCGTGTTTTCAA
AAGTCAAGAAGATCTGAATGCTCATGTACCGTTACACGAATCGGGTCTTC
AATACACATGCGAGCGATGCTCTGCCAGGTTTTTCACACAAGTTGACTTC
TTGAAACACACAGCTAAACATTTTGAAGAATCTACTTTAGCTGTTGAGCA
AAATATACAGGAACAACACCACGTATCTACCGCAACCAATGCTCAACCAA
AGGAGAACGAAGTACCACAACAAAAAGACGCATTACCGAATCCACAGAAT
ACTCTCCAAGAGGGTAACGAAAATGTAAACAAACTACTGGTCGTCTTACA
GCTTCCACAGTCTGCATCCAACCTCAGAAACGAACAAGGTGCGCTACAAG
TGGACAGCATTCAACAACTTCTCGGTACCGTAAGAATTGACAAGTTAGTT
GTCACCACTGATCCCATTTCTAATTCATCACAAGCAGTGGCTTTACAATT
ATCACAATCTCAACAACAAAGTATTCAGCAAATTCTACAAACAACCCATA
TCAGACGACAAAATCCACCTATTTCAACTCTGGAAAGTCTCAACAAAGCC
CCACTAAATGCTCTTGAGACACTTACATCCACCTTGAACGAGGCTGCAAC
GTTTCCTGATTTGACATCACACGATACGATGGACGCTCCCGATCTTTCAC
AGCACGTTCAGTCATCCTTTGTCCTCAAGTCACTCTCACATCAACCGCCC
CCACCGCCGGAAAGCAAATCAGTCTCTCAATATCTCATTGTACCACCAAC
AGGCCCTGGGTTTACACCAATTGTTAATTCGAAGATCAAAATTATCCACA
AACCGCCAGAACCGATCGGAAATAACTCTGTTTTCACTAGACCACCTCCG
AATCTTCTGCAAAACAATGAACTGGTCCCAACCCATCCTTTAGAACTGAT
CGTAAATGATGAAGATGTTCCAGAAACAGGTGTCAAACAAGGGGATTCTT
TTGAACCAAATACGACTTCCTTAACCATGGGTTCTCTTCATCAGACTCCT
GAAAATTCAAATACAGAAGAGAAAGTCAGGAATTCATCCTCGTCCAATTA
TTTTCAGCATCTTTTGAACCTGTGAATTTGTACGTGTGTGACAAATGCAA
TCGAACATTCAAACAAAAATCACGATACGAGCGTCATATACAGAACCATC
CTAGTGAGAAACATTATCTTTGTGAAACGTGTCACAAGACCTTCACAAGA
GTGTCACACTTAGAGAAACACATTAAAACGCACACTGAAGAGAGAAGTCA
TTTATGCGAGGTGTGTGGCGCCGCTTTCATTCTACCACACCACTTGGTAA
GACATATGCTCGTTCACTCAGGTGAGAGACCTTATCAATGTGAAGTATGT
AATAAAACGTTCACACGGAAAGCTGGACTCACGCAACATCAACATGTTCA
TACCGGTCTACGTCCTTACGGTTGTGAGCATGAGAACTGTGGTCGATATT
TTACTGATAAGACTACTTTACGTCGACACATGATGACGCACTCTAGTGAA
AAACCATTCGTTTGCAAAGAATGTGATAAAACTTTTCGGACAAAATCTGC
ATGTCGGAAGCATTATTTGCGACATTTTAAAGATGGTGCATCATATAAAT
GCGGTGTTTGCGAAGAAATGTTTAAGGATGAAAGAGAGTATAAAATGCAT
TTAGAAACACACGACGAGAAGCAACGTACCGGTGCTCACCGATGTGGTTT
CTGTTTGCGTGTTTTCAAAAGTCAAGAAGATCTGAATGCTCATGTACCGT
TACACGAATCGGGTCTTCAATACACATGCGAGCGATGCTCTGCCAGGTTT
TTCACACAAGTTGACTTCTTGAAACACACAGCTAAACATTTTGAAGAATC
TACTTTAGCTGTTGAGCAAAATATACAGGAACAACACCACGTATCTACCG
CAACCAATGCTCAACCAAAGGAGAACGAAGTACCACAACAAAAAGACGCA
TTACCGAATCCACAGAATACTCTCCAAGAGGGTAACGAAAATGTAAACAA
ACTACTGGTCGTCTTACAGCTTCCACAGTCTGCATCCAACCTCAGAAACG
AACAAGGTGCGCTACAAGTGGACAGCATTCAACAACTTCTCGGTACCGTA
AGAATTGACAAGTTAGTTGTCACCACTGATCCCATTTCTAATTCATCACA
AGCAGTGGCTTTACAATTATCACAATCTCAACAACAAAGTATTCAGCAAA
TTCTACAAACAACCCATATCAGACGACAAAATCCACCTATTTCAACTCTG
GAAAGTCTCAACAAAGCCCCACTAAATGCTCTTGAGACACTTACATCCAC
CTTGAACGAGGCTGCAACGTTTCCTGATTTGACATCACACGATACGATGG
ACGCTCCCGATCTTTCACAGCACGTTCAGTCATCCTTTGTCCTCAAGTCA
CTCTCACATCAACCGCCCCCACCGCCGGAAAGCAAATCAGTCTCTCAATA
TCTCATTGTACCACCAACAGGCCCTGGGTTTACACCAATTGTTAATTCGA
AGATCAAAATTATCCACAAACCGCCAGAACCGATCGGAAATAACTCTGTT
TTCACTAGACCACCTCCGAATCTTCTGCAAAACAATGAACTGGTCCCAAC
CCATCCTTTAGAACTGATCGTAAATGATGAAGATGTTCCAGAAACAGGTG
TCAAACAAGGGGATTCTTTTGAACCAAATACGACTTCCTTAACCATGGGT
TCTCTTCATCAGACTCCTGAAAATTCAAATACAGAAGAGAAAGTCAGGAA
TTCATCCTCGTCCAATTATTTTCAGCAT
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
XLOC_036520XLOC_036520-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000028_pilongenomesc0000028_pilon:2124350..2129764 -
Properties
Property NameValue
Aaloc274-1989:1717
Aaloc25-270:2829
Aaloc1-24:5416