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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00014172 ID=TCONS_00014172|Name=TCONS_00014172|organism=Clytia hemisphaerica|type=transcript|length=587bp
GTGAAGCCAACGGTATCATTAAGAACGACTTCATCAGAAAAGGAACAGCA
GAAAAAAGGACCAAAAAGACCAACCACGACCACCACAACGACTACCACAA
CAACAACCGTTCCTCCAACATATGCCTCGAGAAATGAcgCTACCTGTGGC
TACAATACATTGAGCAAACAGATTTCAGCTTTCATTGTCGGTGGTGAAAT
ATCCAGTCGTGGTAAATGGCCTTGGCTAGCTGCAATCTATCTGTATGGTG
AGCACCATTGTGGTGCAACGTTGATTCATCCACAGTATCTGGTGACTGCA
GCACATTGTGTTTTTGATGGTGGATTCTATAAAGAAAAGGAAGATATGCA
TATTGTGTTGAACGATTTTAAAAGAAACATAGACGAGAGTGGCGAGCAAG
TCATACAAGTGGAGAAATACTGGGTTCATCCACAATATGCAAAAGCATAC
ACAATACAATTTGAACATGATATAGCAGTCATCAAGTTGAAAGAACCTGC
TAAATTGTCGAATACAAGTGTCAACACTGCATGCCTACCACAACGAAATG
AGAAGATTCCACTCAATTCAAAGTGCTTCATCACAGG Run BLAST on NCBI protein sequence of TCONS_00014172-protein >TCONS_00014172-protein ID=TCONS_00014172-protein|Name=TCONS_00014172-protein|organism=Clytia hemisphaerica|type=polypeptide|length=195bp
VKPTVSLRTTSSEKEQQKKGPKRPTTTTTTTTTTTTVPPTYASRNDATCG
YNTLSKQISAFIVGGEISSRGKWPWLAAIYLYGEHHCGATLIHPQYLVTA
AHCVFDGGFYKEKEDMHIVLNDFKRNIDESGEQVIQVEKYWVHPQYAKAY
TIQFEHDIAVIKLKEPAKLSNTSVNTACLPQRNEKIPLNSKCFIT Run BLAST on NCBI transcript from alignment at sc0000183:23255..24599+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00014172 ID=TCONS_00014172|Name=TCONS_00014172|organism=Clytia hemisphaerica|type=transcript|length=1345bp|location=Sequence derived from alignment at sc0000183:23255..24599+ (Clytia hemisphaerica)
GTGAAGCCAACGGTATCATTAAGAACGACTTCATCAGAAAAGGAACAGCA
GAAAAAAGGACCAAAAAGACCAACCACGACCACCACAACGACTACCACAA
CAACAACCGTTCCTCCAACATATGCCTCGAGAAATGAcggtatttttctt
ttgttgacaATAAAAGAATTTTACATGCACTTAGATCAAGACTTgctaaa
aaagttacaaaaaaggGGTTGGGTTTCAGTTTAACATAGCCGAATGATAT
CCAATCTGAAGTTCATTTAGGAAAAACATACATTTGATTGGAAGCTGGTG
AACTTGAACCAAATCTCTTTGTGACAAGAGCGAAATATGTTTATCAACTT
GAACTAACCCTTTTGTACTATGTTGATACATGCATGCCACACACATAAAA
TATGTCATTAAATATTGTGTACCTATTTGTGGACACTGGTTTTTAAGATG
TTTGCATTACTATAATCATAGCAATAAGTGCGAGGCCGGACAGCCTAAAT
TCATAGTGCCTCGAATAATTCTTCCCTGGGCTGACGCGATTAAAATGACC
AAAAGCTGCCCAATGATATATCAGTAATAATATTTTAGCTACCTGTGGCT
ACAATACATTGAGCAAACAGATTTCAGCTTTCATTGTCGGTGGTGAAATA
TCCAGTCGTGGTAAATGGCCTTGGCTAGCTGCAATCTATCTGTATGGTGA
GCACCATTGTGGTGCAACGTTGATTCATCCACAGTATCTGGTGACTGCAG
CACATTGTGTTTTTGATGGTGGATTCTATAAAGAAAAGGAAGATATGCAT
ATTGTGTTGAACGATTTTAAAAGGTAAGAGGTTATCATAGGTTAAGTAAG
ACATTAATCCATCTTTCCACCTTAACCACACAAACGAAGGACATCAACAT
TTTACTTTCCCAGTGAAAATATGCAGCAGGAAATTCAAATAACTCcattt
ttgaattaaaatttagAAGAGATTTCTCATGCATTTTTTAACTATGAAAA
GTCAGCCAGGTATCACCCCATTTTTAATATCCCACAAAAAAGTCACATAA
ATCTGTCACCTCTCACTCACTGCTTCGAACCTACTCTTCACCAATAGACC
CTTTTAGCCAAAAAGTATTGACTTTATCATAGAAACATAGACGAGAGTGG
CGAGCAAGTCATACAAGTGGAGAAATACTGGGTTCATCCACAATATGCAA
AAGCATACACAATACAATTTGAACATGATATAGCAGTCATCAAGTTGAAA
GAACCTGCTAAATTGTCGAATACAAGTGTCAACACTGCATGCCTACCACA
ACGAAATGAGAAGATTCCACTCAATTCAAAGTGCTTCATCACAGG Coding sequence (CDS) from alignment at sc0000183:23255..24599+ >TCONS_00014172 ID=TCONS_00014172|Name=TCONS_00014172|organism=Clytia hemisphaerica|type=CDS|length=1755bp|location=Sequence derived from alignment at sc0000183:23255..24599+ (Clytia hemisphaerica)
GTGAAGCCAACGGTATCATTAAGAACGACTTCATCAGAAAAGGAACAGCA
GAAAAAAGGACCAAAAAGACCAACCACGACCACCACAACGACTACCACAA
CAACAACCGTTCCTCCAACATATGCCTCGAGAAATGAcgCTACCTGTGGC
TACAATACATTGAGCAAACAGATTTCAGCTTTCATTGTCGGTGGTGAAAT
ATCCAGTCGTGGTAAATGGCCTTGGCTAGCTGCAATCTATCTGTATGGTG
AGCACCATTGTGGTGCAACGTTGATTCATCCACAGTATCTGGTGACTGCA
GCACATTGTGTTTTTGATGGTGGATTCTATAAAGAAAAGGAAGATATGCA
TATTGTGTTGAACGATTTTAAAAGAAACATAGACGAGAGTGGCGAGCAAG
TCATACAAGTGGAGAAATACTGGGTTCATCCACAATATGCAAAAGCATAC
ACAATACAATTTGAACATGATATAGCAGTCATCAAGTTGAAAGAACCTGC
TAAATTGTCGAATACAAGTGTCAACACTGCATGCCTACCACAACGAAATG
AGAAGATTCCACTCAATTCAAAGTGCTTCATCACAGTGAAGCCAACGGTA
TCATTAAGAACGACTTCATCAGAAAAGGAACAGCAGAAAAAAGGACCAAA
AAGACCAACCACGACCACCACAACGACTACCACAACAACAACCGTTCCTC
CAACATATGCCTCGAGAAATGAcgCTACCTGTGGCTACAATACATTGAGC
AAACAGATTTCAGCTTTCATTGTCGGTGGTGAAATATCCAGTCGTGGTAA
ATGGCCTTGGCTAGCTGCAATCTATCTGTATGGTGAGCACCATTGTGGTG
CAACGTTGATTCATCCACAGTATCTGGTGACTGCAGCACATTGTGTTTTT
GATGGTGGATTCTATAAAGAAAAGGAAGATATGCATATTGTGTTGAACGA
TTTTAAAAGAAACATAGACGAGAGTGGCGAGCAAGTCATACAAGTGGAGA
AATACTGGGTTCATCCACAATATGCAAAAGCATACACAATACAATTTGAA
CATGATATAGCAGTCATCAAGTTGAAAGAACCTGCTAAATTGTCGAATAC
AAGTGTCAACACTGCATGCCTACCACAACGAAATGAGAAGATTCCACTCA
ATTCAAAGTGCTTCATCACAGTGAAGCCAACGGTATCATTAAGAACGACT
TCATCAGAAAAGGAACAGCAGAAAAAAGGACCAAAAAGACCAACCACGAC
CACCACAACGACTACCACAACAACAACCGTTCCTCCAACATATGCCTCGA
GAAATGAcgCTACCTGTGGCTACAATACATTGAGCAAACAGATTTCAGCT
TTCATTGTCGGTGGTGAAATATCCAGTCGTGGTAAATGGCCTTGGCTAGC
TGCAATCTATCTGTATGGTGAGCACCATTGTGGTGCAACGTTGATTCATC
CACAGTATCTGGTGACTGCAGCACATTGTGTTTTTGATGGTGGATTCTAT
AAAGAAAAGGAAGATATGCATATTGTGTTGAACGATTTTAAAAGAAACAT
AGACGAGAGTGGCGAGCAAGTCATACAAGTGGAGAAATACTGGGTTCATC
CACAATATGCAAAAGCATACACAATACAATTTGAACATGATATAGCAGTC
ATCAAGTTGAAAGAACCTGCTAAATTGTCGAATACAAGTGTCAACACTGC
ATGCCTACCACAACGAAATGAGAAGATTCCACTCAATTCAAAGTGCTTCA
TCACA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00014172-exon-sc0000183-1491911889:23255..23393 | TCONS_00014172-exon-sc0000183-1491911889:23255..23393 | Clytia hemisphaerica | exon |
| TCONS_00014172-exon-sc0000183-1510915933:23255..23393 | TCONS_00014172-exon-sc0000183-1510915933:23255..23393 | Clytia hemisphaerica | exon |
| TCONS_00014172-exon-sc0000183-1575043694:23255..23393 | TCONS_00014172-exon-sc0000183-1575043694:23255..23393 | Clytia hemisphaerica | exon |
| TCONS_00014172-exon-sc0000183-1491911889:23843..24077 | TCONS_00014172-exon-sc0000183-1491911889:23843..24077 | Clytia hemisphaerica | exon |
| TCONS_00014172-exon-sc0000183-1510915933:23843..24077 | TCONS_00014172-exon-sc0000183-1510915933:23843..24077 | Clytia hemisphaerica | exon |
| TCONS_00014172-exon-sc0000183-1575043694:23843..24077 | TCONS_00014172-exon-sc0000183-1575043694:23843..24077 | Clytia hemisphaerica | exon |
| TCONS_00014172-exon-sc0000183-1491911889:24387..24599 | TCONS_00014172-exon-sc0000183-1491911889:24387..24599 | Clytia hemisphaerica | exon |
| TCONS_00014172-exon-sc0000183-1510915933:24387..24599 | TCONS_00014172-exon-sc0000183-1510915933:24387..24599 | Clytia hemisphaerica | exon |
| TCONS_00014172-exon-sc0000183-1575043694:24387..24599 | TCONS_00014172-exon-sc0000183-1575043694:24387..24599 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000183 | supercontig | sc0000183:23255..24599 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004252 | serine-type endopeptidase activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006508 | proteolysis |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006508 |
proteolysis |
| molecular_function |
GO:0004252 |
serine-type endopeptidase activity |
Blast
BLAST of TCONS_00014172 vs. Swiss-Prot (Human)
Match: TRYB2 (Tryptase beta-2 OS=Homo sapiens GN=TPSB2 PE=1 SV=2) HSP 1 Score: 88.5817 bits (218), Expect = 4.229e-21 Identity = 49/137 (35.77%), Postives = 79/137 (57.66%), Query Frame = 1
Query: 184 IVGGEISSRGKWPWLAAIYLYGE---HHCGATLIHPQYLVTAAHCVFDGGFYKEKEDMHIVLNDFKRNIDESGEQVIQVEKYWVHPQYAKAYTIQFEHDIAVIKLKEPAKLSNTSVNTACLPQRNEKIPLNSKCFIT 585
IVGG+ + R KWPW ++ ++G H CG +LIHPQ+++TAAHCV + +D+ + + +Q++ V + VHPQ+ YT Q DIA+++L+EP +S + V+T LP +E P C++T
Sbjct: 31 IVGGQEAPRSKWPWQVSLRVHGPYWMHFCGGSLIHPQWVLTAAHCVG-----PDVKDLAALRVQLREQHLYYQDQLLPVSRIIVHPQF---YTAQIGADIALLELEEPVNVS-SHVHTVTLPPASETFPPGMPCWVT 158
The following BLAST results are available for this feature:
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