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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00014138 ID=TCONS_00014138|Name=TCONS_00014138|organism=Clytia hemisphaerica|type=transcript|length=5680bpRun BLAST on NCBI protein sequence of TCONS_00014138-protein >TCONS_00014138-protein ID=TCONS_00014138-protein|Name=TCONS_00014138-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1431bp MGDVKEKFILDWQTVFPGVAVPDISYFANNETIDKEIILCQERIDDLKFKRun BLAST on NCBI transcript from alignment at sc0000181:209774..235322- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00014138 ID=TCONS_00014138|Name=TCONS_00014138|organism=Clytia hemisphaerica|type=transcript|length=25549bp|location=Sequence derived from alignment at sc0000181:209774..235322- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000181:209774..235322- >TCONS_00014138 ID=TCONS_00014138|Name=TCONS_00014138|organism=Clytia hemisphaerica|type=CDS|length=98808bp|location=Sequence derived from alignment at sc0000181:209774..235322- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00014138 vs. Swiss-Prot (Human)
Match: ABR (Active breakpoint cluster region-related protein OS=Homo sapiens GN=ABR PE=2 SV=2) HSP 1 Score: 459.144 bits (1180), Expect = 1.438e-139 Identity = 290/815 (35.58%), Postives = 455/815 (55.83%), Query Frame = 3
Query: 1980 PEELEEEHQHLKASRMRKLLVNNLLDSEKAYMDCLEMLTKFMKPLKISTESSQPILSTADFKHIFHKAEELLELHSDFYNQLEPRIASWNDAQLIGDLFTLIMHSFDLYLGYIGNYKVAMETILKCRQANQQFSSIMDQDIKIISLKDP------LKLDGLLYKPVDRMTQYSLILNDLLKYTSPDHPDHVLIVEVSGALFDLFEQVNVDSSXXXXXXXXXXXELA-------VVEIDDGERRPRSLILFNDVIICAKLKPSGDA----YVGKWYASLSDINLQPYPNSESTPIVPVSSKTECDKIRANIANMRQELRREHMPLQQVVSSSDASPPFMKRRNGPGVRASSRXXXXXXXXXXXXXXXXHLISPSIPLNIYHKNGKCYTLLLAVEAERQAWFEALKPRLKRIHARXXXXXXXXXXELQQAFETVLKCQRLGQRFGSQMPSPFLGPTRPXXXXXXXXXXXKESLTGFLFVSLHYGKGFAKNSDTYVILEMDSYGHFFKKAKTKPCRGS-DPSWEEAFEFEIEACNTLKLTCFNKL----------RLMGDDISGKCTINLTREKLTDNRNHTLSVSLDRGQSILNISLCFSTSIDGIKKSPSFSDTGVFGVPIQVVCKREKFDIPVIVLSCIKEIEKRGMDEIGIYRLSGVASEIQQLKKLFNEQTQNALLVLADTDIHAVAGLLKLYLRELPQSLFTSKLYRKFVQGLSITDSEEKELYMVEVLHQLPKPNKITTLYLFDHLRRVTLLEETNKMGTNNLATVFGPTVLRPPSSNSDKENETSSCNVGTFDIGALDVMSQVGIFRYFL 4340
PE L + K MRKL+++ L SE+ Y++ LE L MKPLK + +SQP+L+ + IF+K +++ E+H +FY+ L P++ W+ +G LF + +Y ++ NYKVA+ET KC Q+N QF I +++K+ KD + ++ LLYKP+DR+T+ +L+L+DLLK+T DHPD+ L+ + + +N D ++ E +VE+ + R+ R + LF DV++CAKLK + Y KWY L+D+ SE++P V E + ++ I+ ++ E+++E + SR +E++KKK+ E E LL L SP+IP I+++NGK Y LL+ + ER W EA++ ++ + + +LSS+ELQ VL R +P + + DD+ L GFL V +H KGF ++++ Y LE+DS+G+F KAKT+ R + +P W+E FE E+E +L++ C+ K + D I GK I L + + HT + ++ + + S+ F++ +K++PS TGVFGV I VV KRE+ +P IV C++E+EKRG++E+GIYR+SGVA++IQ LK +F+ ++ LL+L+D DI+A+AG LKLY RELP+ L T +LY F++G++++D KE M+ +L LP PN IT L+L +HL+RV E NKM +NLATVFGPT+LRP E E+ + DI + DVM+QV + Y+L
Sbjct: 76 PEGLAPGVEAGKGLEMRKLVLSGFLASEEIYINQLEALLLPMKPLKATATTSQPVLTIQQIETIFYKIQDIYEIHKEFYDNLCPKVQQWDSQVTMGHLFQKLASQLGVYKAFVDNYKVALETAEKCSQSNNQFQKI-SEELKVKGPKDSKDSHTSVTMEALLYKPIDRVTRSTLVLHDLLKHTPVDHPDYPLLQDALRISQNFLSSINEDIDPRRTAVTTPKGETRQLVKDGFLVEVSESSRKLRHVFLFTDVLLCAKLKKTSAGKHQQYDCKWYIPLADLVFPSPEESEASPQVHPFPDHELEDMKMKISALKSEIQKEK-----------------------ANKGQSRAIERLKKKMFENEFLLLLNSPTIPFRIHNRNGKSYLFLLSSDYERSEWREAIQ----KLQKKDLQAFVLSSVELQ-----VLTGSCFKLRTVHNIP-----------VTSNKDDDESPGLYGFLHVIVHSAKGFKQSANLYCTLEVDSFGYFVSKAKTRVFRDTAEPKWDEEFEIELEGSQSLRILCYEKCYDKTKVNKDNNEIVDKIMGKGQIQLDPQTVETKNWHTDVIEMNGIK--VEFSMKFTSRDMSLKRTPSKKQTGVFGVKISVVTKRERSKVPYIVRQCVEEVEKRGIEEVGIYRISGVATDIQALKAVFDANNKDILLMLSDMDINAIAGTLKLYFRELPEPLLTDRLYPAFMEGIALSDPAAKENCMMHLLRSLPDPNLITFLFLLEHLKRVAEKEPINKMSLHNLATVFGPTLLRP------SEVESKAHLTSAADIWSHDVMAQVQVLLYYL 838 The following BLAST results are available for this feature:
BLAST of TCONS_00014138 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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