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Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000186_pilon:176026..180242- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >XLOC_041306 ID=XLOC_041306|Name=XLOC_041306|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=4217bp|location=Sequence derived from alignment at sc0000186_pilon:176026..180242- (Clytia hemisphaerica_ch_hm2_pilon)
TTCAAAAAATGTTTGATACTTTTTATACTTATGGACGTTTGTTTGGCGGA
ATTTGAGGATAAATACATTCGAACGTTTCGGGATAAGCGGTACAGTTTGT
ACACTTATTTAAAGATATCGAATGTGAATGAGCTTCAATGTACTTTGGCT
TGTTCGAATGATAAAGAATGCGGATCGATCAATCACAAGAAAGATGAGAA
ATTTTGTGAATTGAATCAGTTGATGGATGAAGAACACCAAAGAGATGATT
TGCAGAACGAGAAAGGATGGAATCATTTTATCAAGAGTAAAGTGAAACCG
ACCTCACTCATCTCGGATAACATCTACATCCCGCATGGTAAGGATAATAT
CTTTATTATCATATTAGACGATCCTATCGTCTACACAAGATCACTAAAAA
AGGGAATAGTTCAGGAGAGGCGTGATAAATTTGGGTGGAGTAAGCAGTGG
CGGAGCTGTTTACAGTTTTGTTCCAAAACTCTACCGCCACTTTTTCCCCG
TAAACCGCCCTGACGCTCGAACTTTTTCCCGCGTTTACTGACCTTTAAAC
GGACGATAGCATCGTCTATATCTATATCATTTATATATTTTTCTCATAAA
ATATTGAGAAGTAGATTTCCCACCTTTTCAGAAGGTTGTTAACCGTAAAT
GTCAGAGTTAGGTTTTGAAATACAACCTGTAAGAAGAAAACAAACAGTGA
AATTCTAGATTCACACTAGACTAGCACGGCAGTCGAGCTGGATCGATATC
ACGCGGGAAAAGTGAGCGTAGAAGTTAGGCGTAGGAAGCGTAGGAAAAAA
CTTTGTCGGTGGCAAGGGCTGAAAGCTGTTGAACAGCAGCCTCTGAATTA
ACAGACTAGTTTATTCTATATTCACACTGACTTTCGACAAACGACTTTGT
CTGACACTTGTCTTGATGACATGATACAAGGATAGATAGAAAGAGTCGAT
ATTCCACGTTGATATTCCACTAATCTATGATTTCAAGGCTCAGTCATTAA
TCCTTTCTTAGAATTAAGCAAGAGCCACAAAGATGTGGTTAGCTATTTCC
TCCGATAGCTCAGAGCATAGATCGTAGTCGCAGTCGAACCCCACAGATTA
TCCTAAAGCCCCAACTTAGTAACTTAGATTTATTGAAACCTTTATATTTT
AACAATAGCGTTCAGTTTGAGGTCGTTGTTGTTATTTTCTGCCCACGTAG
TTTGATTATTCGCCCGATAGTGTCATTTGGGCCCGACTCGAAGCGGAGGG
TGCAAATGGCACTAGAGGGCTGATAATCAAATCGCAAGGGCAGAATTAAT
GACAACAACGAACGAAAACTTAACGCTATTACTATTATTATCCATATCGG
ACATTCAAACAACGTTTTTTTCTAGCGTCAACCAATTCTTTTCGCTTCAA
TGCAATGTCTTTAACAAATTTTTAGCACCTTTCGAGCGGGCCGTAAATGA
CCAAAAAGTGTTTTTTTCTGACGTTATTTTAGTCACTTCGCTTCAATGCA
ACGACTTCAATCCAATTCCGAGCGGGCTGCAAACGACGTTATTGCCCTAT
ACCCGGGCGATTAATGATATTTCAGCCCTCTGAAGCCTGGTGCCTTAGTT
TCCTCAGCACGGGTATGACAATTTGAGTCACAAAACCTTTCAATACCGCC
CGCCGATTGAACCTTTAATAGCTTACTTAATGACCGCTATATGGATAATA
ATAAGCAATATCCGATGCAAAACAAAATGTAACCATATTCCTGCTAAAAA
TTGTCGTTATTTCATATAGACATGTTCACAGATGATATAAGTCTAAAAAA
ATTGTTACCTTCATATTAAGGAAATAAAATCTTAGATTTACAAGTTGATT
TTATTCTAAGACTCATCTGAGTAAGAAAGTGCCAAAATATCTTGAGGCTG
TCTCCTAAGGGACTAATATGGAAATATGGTAATGAATTTGGGAGATATCG
AAATATGTTGTACACATTAGTTTCATATGAAAAACTTCCTTGTCATCAAT
ATTTTAAACCACTATAATATACCATTCACAAAAAAAAAAGTTACTTAAAT
GGATCTCCTTCTTTACAGATTTAGATTTCCAGTGCATAACATCTGTTACA
TTAGTATTCATGGCCATTCATGATAATATACCAAATTGTCAACCTTGAAA
TTCTCATATTTAGTTATTGCTAAATATTTACAACACTTTCCAGCAAACTT
TTTTGTGAAACTTGTGCCTTGATAAACTAAACTCTACATAGCATTTATCC
CTCCTGATAAACTAACAGTCTCCTCACCCTTTAATAATGGTAGCCCAGCT
GCGGCGGAGACATTCTTGTTTCAACATCCATATATCGTTAGGTTAACGTT
ATTTGCAAGCTGGGTGATTGGCATGATTGTATTTTTTCATTTGTGTCTAT
TACAGAAATTCACCTCAAGAAAAGTTATTTACTAACGACCATACCAGTTC
AACCAAGGACTTGGGAATTATCTTTTGATTTCATTCTATTGGAAGATATG
CCATATTGGACTCAGGCCGTTCATTTTACTCTTGGTTGTAACTTGGAAGC
TTCAGGTTGCCGAACGCCTTCTATATTTTTCAATGGAAGAAAATTTCACG
CGGCTTTCAACACTGAGACAAACCTCAACAGACATATCGAAAAAACAATC
ACGTCAAAGAAGAAAACCAAATTTAAATTGAGACAGGTATTCTTGTCAAA
CATTACATTCTTGGATTTGTATGTCTTTGTTTCAAATTAACGGACAATCT
AAGGCCATGAATGTATAAAACGACTGACTGGAGCACCACCTAATACACCT
TTTCGACCGTAGCTGCCAATTCCTGCGCGGGCATTTCTTCCACCCTATAA
CCGCCCCAGTCTTTTTTTCGCGCCTAAAGAGAACAGAAAAAAGTGTAAAA
AAAAGATCGAGTTTAGAGTGGTAAATTGAATAATAAAGTGGCACACGCCT
GACCGCTCGACTACGGTCAAAAAGGTGTATTGTTTCCATGGATGAAAGAA
TAGAAAGATCACGTGATGTTGATGTTAAAGGCACCTCTGCGCTCTGGTTA
GTGGAAAATTTTTCTATTTCTTTTTCCAAGCCAAATCTTCACAAAGATTT
GAACATAACAAAATTTTAAACAATCAATTTTTAGTATTAATCTTTCTCAC
TAGCCTAGTCCGTGCTAAAAACCTTATACTGTATAAATAAACATGCATTT
ATCCTATGTCTAATATTCAATATTTTTAAATTTAAAGGTCGTGTCACCGG
ACGGAAATGATGTTTATACTTCCATTCATTTTGACGATAAATGGTTTTCA
GAAGTGAAACATCACATTACACAAATTTTCACCAACATCAAAGTTTATCT
GGGCGGTATGGGTGATATGGGCGGTTCAGAAACCTTTCCACCAGCACCTG
TTATTATTTCAAATTTTCGTTATATCCAAGGCAATTTGTTTTACCCAGGT
ATTTAATTTTCTCTGATTTTTCGACTTTTGATTTCTGGTAAAAAAAGTAA
TGACTCAGGAGTAAGGACTCAGTACCAGAAGTTTGTAATTTATGATTGAT
GAACAAACATGGCCAGCTGGCACACAACATCGTTTCAACGTTTTTCCGAT
GTTCACAATGTCCATATAACGTTAAATGAACGTTGAAACAACGTTGTGTG
CCAGCTGGTAAGTCACAGTGGGGGTATAAAGGGGTTTAATGATCAATAAT
CATTCGAATTTCTTTACCAGGGCAAATCATAACAATGAAGAAAATCCATC
AAGTTTTTGGGGAACTCAAAAGCTGGCCACCAGAAAGTTGGTTTGTTTCT
TTTGATTATTTCTCATCCCAAACTATTGTTCCTTCATCGTTCTACAACAC
TCTACTTTCATTCTCAAAGAAAGGTACCAATTATCCACACCCAGGAAACC
GTATCATTTATCTTGAACGAATACCAAGCTCTAACAGTATGAAAACATTT
GTCGAATTAAGTGGGAATTCGGCTCATACGCTTTGTTATCGTGATATCGG
ATTTGCTGCCAATACTTTTCTTAAGATCCGACTTCAACAAAAACGAGAAA
GCGATGGGAAACTTTACGTTAAACTTTTTTTAAACGGAGACGAGAAATGC
TGGCATGAAAATACGACACCGACTACTTATGATGATGTTCAAATTTCGTT
TGAAGGATACGATACGCCAAATGGACCAGAAGTTATCATCAAAAATTTTG
AGTTTGGAGAACTTTAA Coding sequence (CDS) from alignment at sc0000186_pilon:176026..180242- >XLOC_041306 ID=XLOC_041306|Name=XLOC_041306|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=2652bp|location=Sequence derived from alignment at sc0000186_pilon:176026..180242- (Clytia hemisphaerica_ch_hm2_pilon)
TTCAAAAAATGTTTGATACTTTTTATACTTATGGACGTTTGTTTGGCGGA
ATTTGAGGATAAATACATTCGAACGTTTCGGGATAAGCGGTACAGTTTGT
ACACTTATTTAAAGATATCGAATGTGAATGAGCTTCAATGTACTTTGGCT
TGTTCGAATGATAAAGAATGCGGATCGATCAATCACAAGAAAGATGAGAA
ATTTTGTGAATTGAATCAGTTGATGGATGAAGAACACCAAAGAGATGATT
TGCAGAACGAGAAAGGATGGAATCATTTTATCAAGAGTAAAGTGAAACCG
ACCTCACTCATCTCGGATAACATCTACATCCCGCATGTTCAAAAAATGTT
TGATACTTTTTATACTTATGGACGTTTGTTTGGCGGAATTTGAGGATAAA
TACATTCGAACGTTTCGGGATAAGCGGTACAGTTTGTACACTTATTTAAA
GATATCGAATGTGAATGAGCTTCAATGTACTTTGGCTTGTTCGAATGATA
AAGAATGCGGATCGATCAATCACAAGAAAGATGAGAAATTTTGTGAATTG
AATCAGTTGATGGATGAAGAACACCAAAGAGATGATTTGCAGAACGAGAA
AGGATGGAATCATTTTATCAAGAGTAAAGTGAAACCGACCTCACTCATCT
CGGATAACATCTACATCCCGCATGAAATTCACCTCAAGAAAAGTTATTTA
CTAACGACCATACCAGTTCAACCAAGGACTTGGGAATTATCTTTTGATTT
CATTCTATTGGAAGATATGCCATATTGGACTCAGGCCGTTCATTTTACTC
TTGGTTGTAACTTGGAAGCTTCAGGTTGCCGAACGCCTTCTATATTTTTC
AATGGAAGAAAATTTCACGCGGCTTTCAACACTGAGACAAACCTCAACAG
ACATATCGAAAAAACAATCACGTCAAAGAAGAAAACCAAATTTAAATTGA
GACAGAAATTCACCTCAAGAAAAGTTATTTACTAACGACCATACCAGTTC
AACCAAGGACTTGGGAATTATCTTTTGATTTCATTCTATTGGAAGATATG
CCATATTGGACTCAGGCCGTTCATTTTACTCTTGGTTGTAACTTGGAAGC
TTCAGGTTGCCGAACGCCTTCTATATTTTTCAATGGAAGAAAATTTCACG
CGGCTTTCAACACTGAGACAAACCTCAACAGACATATCGAAAAAACAATC
ACGTCAAAGAAGAAAACCAAATTTAAATTGAGACAGGTCGTGTCACCGGA
CGGAAATGATGTTTATACTTCCATTCATTTTGACGATAAATGGTTTTCAG
AAGTGAAACATCACATTACACAAATTTTCACCAACATCAAAGTTTATCTG
GGCGGTATGGGTGATATGGGCGGTTCAGAAACCTTTCCACCAGCACCTGT
TATTATTTCAAATTTTCGTTATATCCAAGGCAATTTGTTTTACCCAGGTC
GTGTCACCGGACGGAAATGATGTTTATACTTCCATTCATTTTGACGATAA
ATGGTTTTCAGAAGTGAAACATCACATTACACAAATTTTCACCAACATCA
AAGTTTATCTGGGCGGTATGGGTGATATGGGCGGTTCAGAAACCTTTCCA
CCAGCACCTGTTATTATTTCAAATTTTCGTTATATCCAAGGCAATTTGTT
TTACCCAGGGCAAATCATAACAATGAAGAAAATCCATCAAGTTTTTGGGG
AACTCAAAAGCTGGCCACCAGAAAGTTGGTTTGTTTCTTTTGATTATTTC
TCATCCCAAACTATTGTTCCTTCATCGTTCTACAACACTCTACTTTCATT
CTCAAAGAAAGGTACCAATTATCCACACCCAGGAAACCGTATCATTTATC
TTGAACGAATACCAAGCTCTAACAGTATGAAAACATTTGTCGAATTAAGT
GGGAATTCGGCTCATACGCTTTGTTATCGTGATATCGGATTTGCTGCCAA
TACTTTTCTTAAGATCCGACTTCAACAAAAACGAGAAAGCGATGGGAAAC
TTTACGTTAAACTTTTTTTAAACGGAGACGAGAAATGCTGGCATGAAAAT
ACGACACCGACTACTTATGATGATGTTCAAATTTCGTTTGAAGGATACGA
TACGCCAAATGGACCAGAAGTTATCATCAAAAATTTTGAGTTTGGAGAAC
TTTAAGGCAAATCATAACAATGAAGAAAATCCATCAAGTTTTTGGGGAAC
TCAAAAGCTGGCCACCAGAAAGTTGGTTTGTTTCTTTTGATTATTTCTCA
TCCCAAACTATTGTTCCTTCATCGTTCTACAACACTCTACTTTCATTCTC
AAAGAAAGGTACCAATTATCCACACCCAGGAAACCGTATCATTTATCTTG
AACGAATACCAAGCTCTAACAGTATGAAAACATTTGTCGAATTAAGTGGG
AATTCGGCTCATACGCTTTGTTATCGTGATATCGGATTTGCTGCCAATAC
TTTTCTTAAGATCCGACTTCAACAAAAACGAGAAAGCGATGGGAAACTTT
ACGTTAAACTTTTTTTAAACGGAGACGAGAAATGCTGGCATGAAAATACG
ACACCGACTACTTATGATGATGTTCAAATTTCGTTTGAAGGATACGATAC
GCCAAATGGACCAGAAGTTATCATCAAAAATTTTGAGTTTGGAGAACTTT
AA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000186_pilon | genome | sc0000186_pilon:176026..180242 - |
Properties
| Property Name | Value |
|---|
| Aaloc | 844-1338:496 |
| Aaloc | 631-840:981 |
| Aaloc | 352-630:1811 |
| Aaloc | 13-348:4218 |
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