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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00013588 ID=TCONS_00013588|Name=TCONS_00013588|organism=Clytia hemisphaerica|type=transcript|length=538bp
TATTTCATTGGTCGACGAGTCATCCGATTTACGGGAGGACACACAACTAC
AAGAATTGACTACTGGACTTTCGTACGCATATACTAAACCTGCAGAAACA
ACAGAAGAACAGACTGAACCAGCCTCTACGACTTCAACGACCGAAGAAGG
TGGCGAACAAAGTCTAGAGGATTTAATGagacaaatgaaacaaatttagt
tcttttttagatttaatttacgaaaaaatcttcttttttaatttttttaa
gggGGTTGGGtctcttctttatttttttttgcaaaaatcaacaGAAGCGA
GGCGTGATCTTCTAGCTTTGAACAATTCATACCTTTTTCGCCCGGGCTTT
TTCgtcaaaaagtctttgaaatCCGACGTCGGAAAGTAGAAAACATTTAT
CTTTCGCTAGCTTTAataattattgaatttgaatttttgaaccaaatttt
taaatttctttttattttttatgtacTTAAGTGgtataaattttatttat
tatacaaTACTGAACAATGAAATTAAAAcagaaaatca Run BLAST on NCBI transcript from alignment at sc0000170:49107..52186- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00013588 ID=TCONS_00013588|Name=TCONS_00013588|organism=Clytia hemisphaerica|type=transcript|length=3080bp|location=Sequence derived from alignment at sc0000170:49107..52186- (Clytia hemisphaerica)
TATTTCATTGGTCGACGAGTCATCCGATTTACGGGAGGACACACAACTAC
AAGAATTGACTACTGGACTTTCGTACGCATATACTAAACCTGCAGTGAGT
CCTTTCTATGTATTAATGCTGACAAGCTTGATAAGATACTACCATTTTTA
ATAATTTATTTTAAAAGCGAAATGCTTTGTCAAGAGACACAATTCAGTTT
TTTTTCTAACAAGCAAGTTTTAAAGTGTATGAAATGATAAACAAAATTTA
AACCTTTCCATATTATGTAACCTTTTTCAACGGAAAAAAGGAAAAAAGGC
CAAAGCCAAAATCTCCAACTAAAATCCAATTAAAAATGTCGATGATGTTA
TTAGCCCTGGGTTCGAGGGTGGGTTCTTTGTTTTGTAAAATTCATGATAT
GTACCATTACAATGTCTTCCAAGTACCCATTAGCTGATTGGTTGAAAGTG
ACGTAAAAAGACTAAATTGATTGATTTTACGTCACTTACAACCAATCAGC
TGTTGGGTCTTTAATGTAATGTAAGAAGACATTGCAATGGTGCATATTAT
GAATAGGGACCTTTAGCATCTAGGACGGCAGGATTGAACAAAAATGCCCT
TGGGATTGATATGTGGATCGCAGCTAGATTCTTANNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNAACTTTTTTATTCTTTACTTTACCTCACAGGAGAAGTTAGCAACAC
AACCGAAGGAAGAAGGCGTTAAAGAAACTGAAGAAGAAGAAATTGTTCAC
GAAGATAATGAATGGGGTATGTAAAGTCTACTTCACTAGCAGGGAACAAT
AGCAAAGACTGTAATACTTTCGTTATAGTTTGTATTTGAATAACATTCTT
CTGATCGTTGAAAATATTTTTGTAAGACCTTTGAAGTAAACCATTTTTCC
TATGTCTGTAAATATTAATCTGTGAGTTCCCACGCGGTTTATTTTAAACA
TGGCAAACTGCTTCTTTGTCTGTACACCCAGTATCTACAGCTAATTCCAA
AATTCATTGCCGTAGGGGATAAACGTACTCCGTACTACGAAGCGATAAAC
GTGAGATACACTCTGGTACATAGTAACTGCTTCTATGCTTGGTGTTTAAT
AGGATTTTTAATGGTATTAAAAATCTTTCCGAAGATAGTTAAAGAAGACT
CTTTCTCCCTGGATTGCTCTACCTACCCTTAATCATTCTCTTAGTTGCTA
AGCATCAAGCAGAGAGGCGTCAAAGTACCATTTTGGGAATCTTTGGTATG
ATCCGGCTGGGGGTCGAACCCACAACCTTGCGCACCGTAGCCGGGTGCTC
TACCACTGCACTACGGTCTGAATAAACTGAAACATATTTAATGTACCTTT
TACTTGCACTTTTTAATCACCATAGGTATTTCATTGGTCGACGAGTCATC
CGATTTACGGGAGGACACACAACTACAAGAATTGACTACTGGACTTTCGT
ACGCATATACTAAACCTGCAGTGAGTCCTTTCTATGTATTAATGCTGACA
AGCTTGATAAGATACTACCATTTTTAATAATTTATTTTAAAAGCGAAATG
CTTTGTCAAGAGACACAATTCAGTTTTTTTTCTAACAAGCAAGTTTTAAA
GTGTATGAAATGATAAACAAAATTTAAACCTTTCCATATTATGTAACCTT
TTTCAACGGAAAAAAGGAAAAAAGGCCAAAGCCAAAATCTCCAACTAAAA
TCCAATTAAAAATGTCGATGATGTTATTAGCCCTGGGTTCGAGGGTGGGT
TCTTTGTTTTGTAAAATTCATGATATCTACCATTGCAATGTCTTCCAAGT
ACCCATTAGCTGATTGGTTAAAAGTGACGTAAAAAGACGAAATTGATTGA
TTTTACGTCACTTACAACCAATCAGCTGTTGGGTCTTTAATGTAATGTAA
GAAGACATTGCAATGGTGCATATTATGAATAGGGACCTTTAGCATCTAGG
ACGGCAGGATTGAACAAAAATGCCCTTGGGATTGATATGTGGATCGCAGC
TAGATTCTATTCTTTTCATATCAATTTTCTCATGAGAATAGTGAATTTTA
ATAGGGTAATTTTCAAATCTCAAGACGATATGAAAATTCTTTTCTGACGT
CGTCTTTGAGAAGATGGTAAAGGAAGAGTGCAATAGTTTTTAATGATATG
AATCACTAGAGAATTATAACGTGATCTACAAAAAAATTGACTATATTTCA
AATTATAGTTAATTCTAGATAAAATCGGATAAAATTTGCCGTTTGATTTA
AGATTTACTTCACGTCCCTAAAGGTCCCTAATATTGTGTCCGTTACAGAC
GGAAATTTGATCCGAAGATCTTATATTTTCGGACAGAGCTTGTTTTTTCG
GAAAATGAAGTTAATTCCAGACTTCTTTTAAGATGTCTTACTTTAAAATA
TCAACCGAACTCTAAAGCAAAAACTAGAGCGTACATTTCTATGGAAATTT
GGAAAGTTTTTCTGGGTAGTGAGAAAGTTGAGTAGCATTACAGTACCTTT
TATATAAGTTCTATAAGTTCTTTCTTTATCCCATAGGAAACAACAGAAGA
ACAGACTGAACCAGCCTCTACGACTTCAACGACCGAAGAAGGTGGCGAAC
AAAGTCTAGAGGATTTAATGAGACAAATGAAACAAATTTAGTTCTTTTTT
AGATTTAATTTACGAAAAAATCTTCTTTTTTAATTTTTTTAAGGGGGTTG
GGTCTCTTCTTTATTTTTTTTTGCAAAAATCAACAGAAGCGAGGCGTGAT
CTTCTAGCTTTGAACAATTCATACCTTTTTCGCCCGGGCTTTTTCGTCAA
AAAGTCTTTGAAATCCGACGTCGGAAAGTAGAAAACATTTATCTTTCGCT
AGCTTTAATAATTATTGAATTTGAATTTTTGAACCAAATTTTTAAATTTC
TTTTTATTTTTTATGTACTTAAGTGGTATAAATTTTATTTATTATACAAT
ACTGAACAATGAAATTAAAACAGAAAATCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00013588-exon-sc0000170-1575043694:52093..52186 | TCONS_00013588-exon-sc0000170-1575043694:52093..52186 | Clytia hemisphaerica | exon |
| TCONS_00013588-exon-sc0000170-1575043694:49107..49550 | TCONS_00013588-exon-sc0000170-1575043694:49107..49550 | Clytia hemisphaerica | exon |
| TCONS_00013588-exon-sc0000170-1510915933:52093..52186 | TCONS_00013588-exon-sc0000170-1510915933:52093..52186 | Clytia hemisphaerica | exon |
| TCONS_00013588-exon-sc0000170-1510915933:49107..49550 | TCONS_00013588-exon-sc0000170-1510915933:49107..49550 | Clytia hemisphaerica | exon |
| TCONS_00013588-exon-sc0000170-1491911889:52093..52186 | TCONS_00013588-exon-sc0000170-1491911889:52093..52186 | Clytia hemisphaerica | exon |
| TCONS_00013588-exon-sc0000170-1491911889:49107..49550 | TCONS_00013588-exon-sc0000170-1491911889:49107..49550 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000170 | supercontig | sc0000170:49107..52186 - |
Blast
The following BLAST results are available for this feature:
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