TCONS_00013516 (transcript) - C. hemisphaerica

Overview
NameTCONS_00013516
Unique NameTCONS_00013516
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1308

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00013516 ID=TCONS_00013516|Name=TCONS_00013516|organism=Clytia hemisphaerica|type=transcript|length=1308bp
GCGAACAAACGAACAATTttgtaaatgaaaatgaaaaagaacaaaagaag
gtAACAAATAGAAGAAGATttcataagaaaataaagatggcTGCGAATGA
CATGCTCAGTGAATTATTCAAATTTCATGCACAAATCATCATCGTCCTTA
CCTGCAGTCTATCCATTCTTGGTAGTATCCTTATCATCACAACCTCATGC
AACATTATGGATGTTTTTGGACGGCAAGGGTTTGGAGTTGTTAACATACA
TCGTTATTATAGTGCTTTatactaaactaaaatggcatcTTCAACGAAAG
ATTCGAAAATTTGAACGTAGTGAATCATTCAACGAAAACTTGACACGTTT
CTCACTTAAAGCAGCCAAACAGGTGGACAAAAAGATCATTCTAGTACCTA
TTGTTTACATATTGTTACGCATTTGGGGTACGGTGCGTTTCTTCATGTTT
ATAGCTGGTACGGATGATAAGAAATATAGAGTTGTAGCTGACGTCTTCAT
AGTTTTACAATTATTTGGTGATAACTTGGTTGGATTTGCAAACTGTGTAT
TGTTTTGTTTCCTAACAGTGAAAATTCGAAGACATTTAAAAAGTTCGTTG
TCTCGAATGTACATCAAATGTCGGACATGTTACCGGCCAGACGAGTTTAG
TTATATGGATATTTCTTCGGATGGAGAATTAAGTGAAGATATGTCACTTT
CTTCTACATGAtacatattcaaaatgaagtcaTTTTTACTATCTGATAAA
GGTGGAAATGTGGAAATTTGCTCCAAATTTGAATACGCACTATAAAtaaa
tatgaatatttttatttgcatTTTTGGATACACTTTTGTTACGATAGATT
ATCGTGTTCACTTTATTATGACTACGTATTATATTTTACAGAGAccattt
ttatattataaacAGTTTGGAATTTTTAACCCTTTCAACCCAAAAGCTCT
TTATGAGGTTTTTTAAAAACACTATGATCTGAATATGAGATATATCCGGA
AGTCATCATTGAGAACTTAGAACTGAAAGGGTGAAACGAAAAATTTTGTG
tagaatttttataattttgtaaaTGTTATAAAAGTTCACTAATCTAACAG
CACTAATTGATACTAATTTAAAAAgtcataatttatttatttaaaatccT
GGTCTTGCTGTCGCCTAAACTAAAGGCAACCCTGTGTCACAGAACCGTTT
GGACCCCAGCCccatttggcaaaaatttcgtctctggtggtggaaaaata
ccctagaatttcagccccactgggaaattcaGTGTTTAAAAATTGCGCTT
CAAAACcg
Run BLAST on NCBI

transcript from alignment at sc0000168:449803..453242-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00013516 ID=TCONS_00013516|Name=TCONS_00013516|organism=Clytia hemisphaerica|type=transcript|length=3440bp|location=Sequence derived from alignment at sc0000168:449803..453242- (Clytia hemisphaerica)
GCGAACAAACGAACAATTTTGTAAATGAAAATGAAAAAGAACAAAAGAAG
GTAACAAATAGAAGAAGATTTCATAAGAAAATAAAGATGGCTGCGAATGA
CATGCTCAGTGAATTATTCAAATTTCATGCACAAATCATCATCGTCCTTA
CCTGCAGTCTATCCATTCTTGGTAGTATCCTTATCATCACAACGTACGCT
CTCTATAAAGATATTCGTTCACCCTCACGTCACATTATTGTTTGTATAAG
CATAGCTGATATGTTTCAAGCAATGGCTAACTTATACTCTGCTTATTTTG
TAAACCAAAAGGATGAACATTTTATGGAAAATTGTATAATCCAAAGTTTT
GTTGGGTCAACAGCTATCAATTGTTCCTTTATGTGGACTATGATGCTAGC
CATTTTTCTCTTTATCTCATTGGACAGAGAGAAGCCATCTTTAGCCATTC
GATTGATTCATCCATGGTTTCACTTGATATCCTGGCTTATACCTTTATTC
ATCAATTTGTTAGCGTTATTTCTTAGGAAGTTAGGCGATAATTATGATTC
AGCGTCTGCTGGATGGTGCTGGATTCGAATGGATGATGGTATCATATTTA
TTTTACAATCTTTATTCATTTTAAGAATATTCCCAGAATCTCCCAGCTGC
ATAGGATAGTTTGTTGAGCGGTTAACAGACAAATAAAAAAATTTGTCGGT
GGGAAGGTACTGGCTAGTATGAAGGCATATGCGCTTTAAATCTTAAGTGA
AGAAATAGCCTGATTCTAATTGCTCCAAGTGAAATTTTTTTACCAATCAT
CAGGTGCTCTCCCAAAAGATAGATTTTTCTTCTGAGTGCAAACTAACTTC
TTTCTGAATTCGATTTTACTAGGTTGGGGGTTTTTTTTGGTTGAGTTTAT
CTCTACCCAAATATTATATTAATTCTTTTTTTTTGTCTAGCTCATGCAAC
ATTATGGATGTTTTTGGACGGCAAGGGTTTGGAGTTGTTAACATACATCG
TTATTATAGTGCTTTATACTAAACTAAAATGGCATCTTCAACGAAAGGTA
TTAAATTTAAGGGTTTTTAAACTTTCTTCAAATCTTTATGTTTGTTTTAC
TGGTAGCTTTAAGTATTTCAGAATTAATTGCCTCCTTACCGAATGATTTA
ATTCTTTCTTGTTATTCAGAGGTTTGCTATCTATAATCCAGGAAATAGTT
ACAGAAAAATGCTTTTAAAACCTAGTCCCTCTTATACAGTGTTCAGGTCG
CTGGAAAGTTTGTCTGTTCAAGAAAGGGAGGAGGCATCTCAGAGGAGTTG
TTTCATTCTTTTTTGCCCCTGATTGTCAGTCATTCAGCAGTTTTCGAGTT
TTCAGTCATATAGTTATGTCCTACTATTTTGTATTTGTTGTCATGAATGA
TTTTATTAATTACTTTCTACACTTTCTTATTCTAGATTCGAAAATTTGAA
CGTAGTGAATCATTCAACGAAAACTTGACACGTTTCTCACTTAAAGCAGC
CAAACAGGTGGACAAAAAGATCATTCTAGTACCTATTGTTTACATATTGT
TACGCATTTGGGGTACGGTGCGTTTCTTCATGTTTATAGCTGGTACGGAT
GATAAGAAATATAGAGTTGTAGCTGACGTCTTCATAGTTTTACAAGTAAG
TGAGAGTAAAATTGCTTTCTTTTACCGTCGTCCTCAGGTACTTAGGATCT
GGAGAAGCCAGAAACTAGCCACCCCTTTGCAGAAAAACACAAACTCAATG
AAATCATTTTAACGGTGGTCTTAGAAGGATGTATATTTGAATGTAAGGCC
TGATTTATATGTGGGTGGGAACTTGGCAACCACCTTTTTCTTTTTCTACA
GAACCTTAGTCTTACTTTGGTTATCTTGCTTTTTCTGTTGATTTCATAAA
GACTCTCCTGGATGACTCATCTCTTCAAATTGGATGTGATACAACCCAAT
CTTGTTTAGCTCTAGTTTAGACAATCAACTTTTCGCCCTGTCTATTCTTA
TTGCGAATTGAAGTTGGCATCAGAGAGTTGGCTGTCTAAAGTCAATGCAT
TGCCCTCGGGGGGGGGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTAGTTATTTGG
TGATAACTTGGTTGGATTTGCAAACTGTGTATTGTTTTGTTTCCTAACAG
TGAAAATTCGAAGACATTTAAAAAGTTCGTTGTCTCGAATGTACATCAAA
TGTCGGACATGTTACCGGCCAGACGAGTTTAGTTATATGGATATTTCTTC
GGATGGAGAATTAAGTGAAGATATGTCACTTTCTTCTACATGATACATAT
TCAAAATGAAGTCATTTTTACTATCTGATAAAGGTGGAAATGTGGAAATT
TGCTCCAAATTTGAATACGCACTATAAATAAATATGAATATTTTTATTTG
CATTTTTGGATACACTTTTGTTACGATAGATTATCGTGTTCACTTTATTA
TGACTACGTATTATATTTTACAGAGACCATTTTTATATTATAAACAGTTT
GGAATTTTTAACCCTTTCAACCCAAAAGCTCTTTATGAGGTTTTTTAAAA
ACACTATGATCTGAATATGAGATATATCCGGAAGTCATCATTGAGAACTT
AGAACTGAAAGGGTGAAACGAAAAATTTTGTGTAGAATTTTTATAATTTT
GTAAATGTTATAAAAGTTCACTAATCTAACAGCACTAATTGATACTAATT
TAAAAAGTCATAATTTATTTATTTAAAATCCTGGTCTTGCTGTCGCCTAA
ACTAAAGGCAACCCTGTGTCACAGAACCGTTTGGACCCCAGCCCCATTTG
GCAAAAATTTCGTCTCTGGTGGTGGAAAAATACCCTAGAATTTCAGCCCC
ACTGGGAAATTCAGTGTTTAAAAATTGCGCTTCAAAACCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007547XLOC_007547Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013516-exon-sc0000168-1575043694:453050..453242TCONS_00013516-exon-sc0000168-1575043694:453050..453242Clytia hemisphaericaexon
TCONS_00013516-exon-sc0000168-1575043694:452196..452302TCONS_00013516-exon-sc0000168-1575043694:452196..452302Clytia hemisphaericaexon
TCONS_00013516-exon-sc0000168-1575043694:451598..451807TCONS_00013516-exon-sc0000168-1575043694:451598..451807Clytia hemisphaericaexon
TCONS_00013516-exon-sc0000168-1575043694:449803..450600TCONS_00013516-exon-sc0000168-1575043694:449803..450600Clytia hemisphaericaexon
TCONS_00013516-exon-sc0000168-1510915933:453050..453242TCONS_00013516-exon-sc0000168-1510915933:453050..453242Clytia hemisphaericaexon
TCONS_00013516-exon-sc0000168-1510915933:452196..452302TCONS_00013516-exon-sc0000168-1510915933:452196..452302Clytia hemisphaericaexon
TCONS_00013516-exon-sc0000168-1510915933:451598..451807TCONS_00013516-exon-sc0000168-1510915933:451598..451807Clytia hemisphaericaexon
TCONS_00013516-exon-sc0000168-1510915933:449803..450600TCONS_00013516-exon-sc0000168-1510915933:449803..450600Clytia hemisphaericaexon
TCONS_00013516-exon-sc0000168-1491911889:453050..453242TCONS_00013516-exon-sc0000168-1491911889:453050..453242Clytia hemisphaericaexon
TCONS_00013516-exon-sc0000168-1491911889:452196..452302TCONS_00013516-exon-sc0000168-1491911889:452196..452302Clytia hemisphaericaexon
TCONS_00013516-exon-sc0000168-1491911889:451598..451807TCONS_00013516-exon-sc0000168-1491911889:451598..451807Clytia hemisphaericaexon
TCONS_00013516-exon-sc0000168-1491911889:449803..450600TCONS_00013516-exon-sc0000168-1491911889:449803..450600Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000168supercontigsc0000168:449803..453242 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.766664	0	0	0.931246	0.353596	0.511651	0	0	0.387174	0	0.198984	0	0.115484	0.476088	0.203003	1.05817	0.610432	0	0.23057	2.49159	1.32311	0.236496	0.679113	1.31418	0.674585	5.56307	1.77407	2.79969e-05	0.336883
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00013516 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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