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Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000001_pilon:3486080..3495133+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >MSTRG.186.1.p2 ID=MSTRG.186.1.p2|Name=MSTRG.186.1.p2|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=9054bp|location=Sequence derived from alignment at sc0000001_pilon:3486080..3495133+ (Clytia hemisphaerica_ch_hm2_pilon)
CTTTTCTAATATCTTTTAGaactaaaaaaacaacatcGATCACAATAACA
ACAAATGAAGACAAAAGAACGTTGATCGTTCGACACGTTCAAAACACATT
CAAAACATGTCCACGTTGAGCACGAAATGTATCTTCTTGAAAAAACCTTT
AGAAACGATGATGATGGCGCAGACACACCGTTCATTGTTTGTGGACGCTA
CTCTCAAATGTCCTGTCATGTCCAGCATGCTGGCGAAGAAAAATGATCAC
TCaaatttgaaaggtattttgcttattttctaaACATGATTAGAACCACC
GACTTTCTGTCTTCTCTCCGCTCCATCTTATTGGCTCTTTCTGGCTCTTT
TAACACCGGTCCTAAGTTAACGCCAGCCTCTCATACTGCCACTGTCCAAT
TTGCAGCTTAGGCCGCTAAAAGGGGCCTTCAAAGTAAATGTTGATATGAA
TTGGCATGAATAGGGTCGAAACTGAGCTACTTATGTAGGGCTTAAATCTA
CCCTTACAATATTGGAACCGGATTTGTCTTTTAATGTGTATGTCAGATGG
AAATGGTTATTTGGTGTGTGGCATTGGGTCGATGGATGTGTACTAAGTGG
CAGTTTTTACACTAGGCTTGGATAGTGGTAGTATTCGAGCATTTGCTTTG
AACTATTTCCATCGATGATCTTTACTATTGATTTTGTCATATATgttttt
tctttggattgatttgctagttttgggttcagttattaaactttttcttt
tgtaaaggtagtttttggccttcATTAACAACTCTGTACTGCTTTCTTCA
CATTAAAAATGTCGTTCTTCGGTTCGTAAACTGTTGAACGGTTTAAATTG
AAAATCGATGTTTTCGTTTAATTTTCTCCTGCGCCTCTCCTCTTGATTGG
AGTAAAATAGCAAGGTGTGTTTGATTATGTTTCTTTCCTTAAATGTCGAT
AGAAAGCCGATGAATTTCATGCCATTGCTGAGGTTGTTAAATAGATTTAA
TTGATTAAAAGTTAATCTTTTTAATACCGATGTGATAATGAAATTCTGTA
CACGCTTGTTACTCAGCACTTTTTTAATTCTGCGCTGAGGTAATTACTGG
AATTTAACTACGGATTATTGTTTAATGCATTCAActataaatttgaatat
aaatAAAACCATATATAAAACACCTGAAAACACTCCTATAACAATCATAT
AACTCTAACTCCGGAGGCTTTCCCTACTTTTGACAACGCATTTCGTGCCA
AACTTTGACATGATGCAATGACAAACTATATTTCATTTAGTATATCTTTT
TATCAACATCATCCCATTATCTCTCATATATTCTCTCACTCGCAACTCTC
CGTCTTTCACGTTTTGATAAGAATGTGTGGAATGTCTTTCGATCTTCAAC
GCTGAACACCACATGGTGATAGAAATGTATTGAAAATATCACGTGGTTCT
TTATTCAGACATTTCTCATCAGATTTAGATATCTGGCCCAAAGTATTACA
AATGCAAGGGTTTCAAATTAAACTACGCacgagaaaaaaatatcaagcat
gtttttatttatccaaaaaatgtttttctatttttaaattcaataaaagt
aataagattatACACTTGCCTCATACATGTTTTTGGCTGATATAGTGACC
CTTACAGTATgccaaaaatggaaaaaaatgagctaaaattgcttgtcGCA
CGGCCACTTACTGTtttgtttacttgattttttttcgtgcaaatttcaTG
AGATCAAAGTAAAAGCTACACAAATAtctaattcgaaacccgtgtattat
tGGAAAGTACTAATTATTTCGTTTCTCGTTACAAAACGTCCCTAAATTCA
ATCCTTTATTTGCAGGTCAATGTCCATTCAGCCAAGATTCAGTCCTTCAA
ACGTTAACAAAGGGCGTCAATCGATTCTTCCACACTTCACAACACGATAA
TGCATCTAAAAACAACCCTCCGCCCATAAACACTAAAGATACACCGCCCT
CAGAAGAAGGGCGTATTTTCAATGAAGAAATTGGAAAGCCTGCAACAGGA
CAAGGGAATCATCTCAATATTTTAGAAggtttttatcttattttcttTAT
ATTAGTAGGGGGCTAAGACTGGGGtgccgtgacatcttttttttaCCTAA
CCGTTTTACCGTTTTCAATCTgtaagggaaaataaggggtagaaaaatag
cttattttcaaaagtcaaaacatacgaaaatgattggtaccatctgatag
tGACAGAgcatgaaattaaaaaaaaattgtattacaacaactcccTGACT
TAAACagacaaagaaatacagccgctttaagaccaactaactgtttACTG
TGATTTGTCACGGGACCCCAGGCTTGGTCCCTACTATATGACTTGCGCAT
TCAAAATGCCAAGACTAGTAAGTATAGTATAGACAGCCCCCTTTTTGACT
GCCTATTCTAATTTtgggcagaaagttggctgCCTAAAGTCAATACATTG
CCTTCATCGATGTCAATGCAATGATTTCTTTCAATATCTTTcgagcaaag
attttaactctCAACTTTCTGCACACTTTTTGCTCAGAAAGtcgaccgtc
taaactagagctattCCCTTATGCTCCAAAggtttgaagtaataaaaagt
TAATATAGCTTAAACCACATCTCGATAAACGAACATCTTAATAgtaatat
aaattttttgatgattccCCACCTAAGATATTTATAAggatccaattttt
ttttggcattgCAGTTCATTCTTTCTCAGATATTCACCATGTGCCGCACA
AAACCGCACAAACGCCCAAACGCCTCCACATCAAATAACAACGGAACTGA
ATAAGCAACATTTTAAATACGAGCAACATTTCAATCGAATGATCGAAGCG
AAGAAAACCGATCATTCTTACCGCATTTTCCGTAAAGTCAACCGGAATAC
GGAATCCTTCCCGATGGCGGACGACTACACCTTCTCCGACCGCCCACACA
AAGTGACTGTGTGGTGTAGTAACGATTATTTGGGTATGAGTGGTCACCCG
GCGGTTGTAAGCGCCGCCAAGTAAGTAGAGTTCTTTGTTTGATTACTTGT
CATATTTTTCGTAACACGGGGTCCACTAAAAGCTTTTTCATAGGCTGGAT
TACGCGATTAAGTGGTCCAGTAGTACATGGCAGTTCTCAATTTTGAGCTT
CACTTAGGCGTACTGTAAAACAGTCTTTCAAAATGGTGATCTTCTCAAGT
GCTCccagtctacttcactggactcgtTGGAATCAATAGAACATTATGAG
CAAGTTTTTAGTACTGATCTTTATTATACCTTGGGCACAGTTTTCTCGAT
CTCTGTcaaacaaaatctaaaatagcGGATATAGTTTGGTCCAGGGTCCA
AGGTCGTGAATAATCTGGGTTAAGGTAGAAAAtcctttaaaaattgcact
attTGGAACCCCGATAAAACTTTTTCGACTTTTGCTGACACGCCATCGAT
GTgtgtttatttaaaaagaaaacgtaatttttaacccttccaGTCCCAGA
GACCCACAGAGCGGGTTCCTCCTGGACACAACTTTCACCTGGCCATATCT
CTGGAACTAATAGATTTCCGTAAAGTACAAAGTTCTGGGACTGAAAGGTT
TgattaaaaactaatttttgttctacacattttttttcagatcaGTGATC
GATGAGAATGGTGTTGGTGCAGGCGGTACACGAAACATCTCTGGAACAAG
CGTCTATCATCCAATCCTCGAACAATCATTAGCGCAATGGCATCAGAAAG
AGGCTGGCCTCGTTTTCACGTCATGCTATGTTGCCAACGATACGGCCCTG
TTCACACTTGGACAACGGTTACCTGGGTGTATTATTTTCTCAGACGCGTC
CAATCACGCCTCTATGATTCACGGTAAGAAAACGCAgcactttttatata
agaacatgaatcTACCTCAGGCAAACTTACTGGCTCTTGTAAAAGCGAGT
AAAATTTGAAAGTACGATTTATATGTTAAAGGGAACGACGTATGGTATAT
TTATTAAATGCTGTtctagcattggcacaaacatccatacggaggagtat
ttaggagtgctggatcataacaaaaaccaaaagtgactttattccaaaaa
atatattcaaaaaagtgaatataatttaccggcaggtacaaaatgcataa
aacataatgcatattgcataatgcataatagtattgtgtaatttacagaa
cgattttttattttctaaaactctcctagAGGCAAAAACTGCGAAAACCt
ctttataagagtttcttaaaagtaaacattccaattagagggatttcccc
aaagacgttgtttacttttcgaatcagaacgaaagagaaaacattcgaat
cataacaacaaagggttttccgtcagcataaataagAAGAAGATGCAGCT
TCTTATTTCTATAAAAAGgtaaacataaacattcgaatgtgaAATGATTC
GaagtcttttttcttttctttggtgttttctttGAGCATCCACATTGGTT
AATGATTTTtaagagggaaaacccgttgaactttattagcaattgttcga
aaagatctctgagaaaacccagaaagatattgctataaaatttacgtttt
cgagtaagaaaagtaatatacggaggagatattttcgtgttttttctaca
ctatactacgttctgtaaaatacaacaatgaaaatcaaaatggcgacaag
cattttcactGGATCATGGactttcttcatcatccaaaattcaagtttac
agctttctaccctttattttctggtagaaaatggtatatttgttttgttg
aaagtattatctctcagattctccttattatagcctctaaaattgacatt
tttcaaatattatgcattatgcaatatgcattatgtttatgcattttgga
cctgccgtaTAATTTACTGTAAtgttcAACAATAACACTTTTTGTTTACA
TTTTGTCTTCATTCACTTTCGTTTACTGTTGAAAACATAACAAAGTTTTA
GCTATACTCTTAAACCGCGTATAACTGTCGGTTAAGCCAATCAGCTTTCG
GGCTGACATCAGGcatgtatttcagagtataccatggaagTACCACCAAA
tccgacccctactataagtatagcgctattGCCTTTAAATAGCCTTCGTT
TGATAgtttaattatctttttaaatatttcactaatAAAATTGATCGTTT
GATCAATAACATACTGTATACAATATGTgctttgtaccaaaaattacGAG
TGTTGTTGAAATTTTAGTAAAGTTAACCTTGAGATTCTCACTTTTAATAG
GTATTCGGACCAGTGGCGCCGAGAAGAGGATATTCCGGCATAACGACGTC
GCTCATTTAGAAGAGTTATTGAAAAAGGCCGACCCATCAGTGCCGAAGAT
CGTTGCATTTGAAACGGTGTATTCGATGTCTGGAGTGGTGTCCCCCTTAG
AAGAACTTTGTGATGTGGCTCACAAATATGGTGCACTCACTTTCGTGGAT
GAGGTATGCAAATGAATTTATACCAACATTTCCTTTCTCTGTGAAACTGA
TAGCTTAAATCTAAGTGTTTTACACTTATCATGGCATTCAAAAAGGTCAC
TGACTTCATCAGTCACTTGAACAATTTCAGGAAATGTAAACTTTTTTCCC
ATTTGATTTCGCACTTGCTGTACTTTACTTGTATTAATTGTTTgtctttc
aattttctttgcGAAATATTGACAAACGGTaattctcgctaattcgaact
taaatTACTCGCATGTTACTAATAACTCGAACTAATTCTCCGCTTCTGTC
AATGAGAAACTCACTCAAAATCCCTCTCTGTCATCAAGACAAAATTTGTG
TCCATTTAAAGTTAGATCTAGTGAAAATGATTTTTATTTCTCCATCATTT
TTCTCAGGTGCATGCAGTAGGACTGTACGGCAAACACGGCTCAGGAATCG
GTGAACTTCACGGAGTGTTGGACAAGATGGACATCATTTCGGGGACCCTC
GGTAAAGCTGTTGGATGTATCGGCGGTTATCTGGCTGGTTCAGCGTCGCT
CATTGATACTCTTCGCAGGTATACGATCTGTTTTGACTTGTAAAagaatt
catcaaaatatggatgTGAATTTTTTGGCTAGACATTTTAATTCTGAGGC
CGTAAGGCAACGGAACAACACGAATAACGATGTTTGATCACTCCCGTAGA
ACTCGCCTACCTCGAACTCACCGTTTCTCAAACGATAACTTGTTCCCTTA
GTTTTTAAGTTTGGAAGACTCTATGTTCTATCAAAAGATCAAAGGCGTAA
ATAACAAACAatttcaatacttttctttcGTCAGTTACGGTGCAGGATTC
ATCTTCACCACCGCCCTACCGCCAGACAAAATTTGCGCCGCTCTCACTTc
agttgaaatcttgaaaagtGAAGAAGGAGAAATATTGAGGCAACGTCATC
AAGAGAACGTCAAGTTGCTTCGAACGAAGTTGTTGAAAGTTGGACTCCCT
GTGGAACATTGCACCAGTCACATTGTCCCTATACAGGTAACtgtcgaaaa
atttttaaaagagaaaCGCGACTGTGTAAATTTACAGTGAAAAGTTgcaa
tcttttgaaaatattcgaGCTTTCTTGTTGGAcgtcagtactaaaatgta
agacatacatgagtactaaaaggattttcgctaatttttgacataccccc
acctatttttcgaaaatgttattttagtacccatgtactaaaattatttt
gagcaatttaacatagataccacccatttctTGCCCTTTAacggctttaa
atttaccaaaatggggtcattgttacaaacctagtcgaatttagtgcatc
gatctgcaaaataatataattttattactaaactgtgctgaactgtacat
taaaatatttttgaaaaatatttaaaaagttggaaaaattctgaaagatt
tctgaagattttttcgaaaattcctgaaaaaaaaaatctaattttttcca
aaattattaaaaaaatgctccattttggctgattttagaacaaaatactc
agatttttcaaaaatttctttaagagaccaccctttttggtattttagta
caccaTAGTgggcaagggggttccaggtcccacctgaaaattcaggtccc
accttatcctaaaattcccaccttcagcccagactcccagatcccagcta
aaaacaaaaaaaaaatactaattcgaggaacaaaacaaaatttctttacc
gtaaTATGAAGATGCAatatattacatatgatatattaatatgtctatta
tatacatttaaaaagcagatatattaAGGCTCTCAGCTTATGCAAAATAA
AAGCAGCTCTATCTatctaaaattaattaaataaaattttactttaactt
tttccaaaacacccaaagtcccacctaaagaaattaactcccaccttaac
ttgtttctcccacctaaaacctggaaaaccccaaatcccacctgaaaaat
ttcgacccaaatcagcaaaagccccccccccactattctggggggggggt
gcacactatgtacacatggtactaaaattaattttgagcttttttgcagt
accaccacgttactaaatgtcatgatgtctgagattttagtaccgacccc
cccctgataTATGTCCGTTTTTGAAGAAGGAGTGCTTTGacaattcaaat
tcattttggaaaaaacgGCGCTTTGTTACTTTTTAAGTCGCCCTACGAAt
ttcttgtttgatttttccttCCTTAAGGATGGATGGATAAGTTGAGAGAA
GATGTTTACCAGCCTTTGCAACGGGTCAATATCCTAGCCTATTCTAGTGT
TTAACCTCCTTGTTCGACAACCTATATGGCTATGCATCCACGTAACAAAC
CCATCCACTTTGAATTACGATTTTAGGGACGACTAGAAAGGCTTTTTTCT
TGCTAAAGGTTCTAGATCAATCTTTCAAAGGATGACTATTCAATTTTAAA
GGCTTCGTTATAATTATTTCcatcaattttctttcaagtgttttgatgCG
GAGAAATGTTTGGAAATTTCGCGACGTCTTCAACAAGAATACGGTATCTA
CATTCAATCCATCAACTACCCTACTGTTCCGCGCGGCCGCGAGAAGTTAC
GCATCGCACCAACGCCCTTCCATACCGAAGAAATGATGGATGAACTGGTT
TCCGCCCTCAATCACGTATGGCGGGATGTGGCGTTACCATATGTACACCC
TGTCTGTGAAATGGACTGTAAATGTCAATTATCATGTCACAATTTTGATG
TCCAACACGTCAAGAATTTCCTATAACCGCCCACCGCCCACCACCCACCA
CTGCCACCTGCCgctgtttttaatattttaattaaTGCAAGTTACTCTGC
ACGCAAACTTTTACTCGTATATACTCCATAGAAGATAGAATTCTCTGCCa
ttcaaatgttttttaaatttgtataaaCCCTCCTTTGCAAACCCACTTTA
TACTCGATGCTAATCTCTAATCGAATGCATGAACCTTCTCCAGAAGTGGT
GGGTACAATGCAGAATGCGGAACATGTTACCGAAATCTATGAGgtttcat
gttttgttaaattaCGTAGCTTTCGCCTCTCTTAAGGTGTCGCCTCTACA
AATTCAAACGTTTCCTTCCATAACATCAGAGTAATAGAGTCGATCCCGGT
TATTCCCGGTTATCAATTTTTGCCGAAGTTAGAGGTAGCTCCAGTTATCC
CTTCCCCAAGTGGTAATTTGAATGtataattgaattatttttttatttta
taatatttggtggtgtttgtatgtatgtctttgaatatttgtgaattatt
tttttgtgaatggATTATTCGTTTACTCTCTGactatttgatgaaaaatg
aagaaaataagaCGAATCACAATGCACATAGAAATAACGTCTTGTCGTCT
TTTGATTTGGTGGAAAGACCGAAtcataatacaccttttcgaccgtagcc
ggcA Coding sequence (CDS) from alignment at sc0000001_pilon:3486080..3495133+ >MSTRG.186.1.p2 ID=MSTRG.186.1.p2|Name=MSTRG.186.1.p2|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=1287bp|location=Sequence derived from alignment at sc0000001_pilon:3486080..3495133+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGTCCACGTTGAGCACGAAATGTATCTTCTTGAAAAAACCTTTAGAAAC
GATGATGATGGCGCAGACACACCGTTCATTGTTTGTGGACGCTACTCTCA
AATGTCCTGTCATGTCCAGCATGCTGGCGAAGAAAAATGATCACTCaaat
ttgaaagGTCAATGTCCATTCAGCCAAGATTCAGTCCTTCAAACGTTAAC
AAAGGGCGTCAATCGATTCTTCCACACTTCACAACACGATAATGCATCTA
AAAACAACCCTCCGCCCATAAACACTAAAGATACACCGCCCTCAGAAGAA
GGGCGTATTTTCAATGAAGAAATTGGAAAGCCTGCAACAGGACAAGGGAA
TCATCTCAATATTTTAGAAgATATTCACCATGTGCCGCACAAAACCGCAC
AAACGCCCAAACGCCTCCACATCAAATAAATGTCCACGTTGAGCACGAAA
TGTATCTTCTTGAAAAAACCTTTAGAAACGATGATGATGGCGCAGACACA
CCGTTCATTGTTTGTGGACGCTACTCTCAAATGTCCTGTCATGTCCAGCA
TGCTGGCGAAGAAAAATGATCACTCaaatttgaaagGTCAATGTCCATTC
AGCCAAGATTCAGTCCTTCAAACGTTAACAAAGGGCGTCAATCGATTCTT
CCACACTTCACAACACGATAATGCATCTAAAAACAACCCTCCGCCCATAA
ACACTAAAGATACACCGCCCTCAGAAGAAGGGCGTATTTTCAATGAAGAA
ATTGGAAAGCCTGCAACAGGACAAGGGAATCATCTCAATATTTTAGAAgA
TATTCACCATGTGCCGCACAAAACCGCACAAACGCCCAAACGCCTCCACA
TCAAATAAATGTCCACGTTGAGCACGAAATGTATCTTCTTGAAAAAACCT
TTAGAAACGATGATGATGGCGCAGACACACCGTTCATTGTTTGTGGACGC
TACTCTCAAATGTCCTGTCATGTCCAGCATGCTGGCGAAGAAAAATGATC
ACTCaaatttgaaagGTCAATGTCCATTCAGCCAAGATTCAGTCCTTCAA
ACGTTAACAAAGGGCGTCAATCGATTCTTCCACACTTCACAACACGATAA
TGCATCTAAAAACAACCCTCCGCCCATAAACACTAAAGATACACCGCCCT
CAGAAGAAGGGCGTATTTTCAATGAAGAAATTGGAAAGCCTGCAACAGGA
CAAGGGAATCATCTCAATATTTTAGAAgATATTCACCATGTGCCGCACAA
AACCGCACAAACGCCCAAACGCCTCCACATCAAATAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000001_pilon | genome | sc0000001_pilon:3486080..3495133 + |
|
