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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00013192 ID=TCONS_00013192|Name=TCONS_00013192|organism=Clytia hemisphaerica|type=transcript|length=1133bp
TAAGGAAAGTAAGATTCTATAAATATAAATACACTCTACATACACTCAAA
tgataaaaatatacaaatgtAAAAATCAAGATAATTTTTTTCGGAGTGCC
ACTTCTGTTGCTGCGGAAGGACCTCCATCATTGTTTTGAGATTCGTTTCG
AAGTTTACGACGAATGCTTTGAATAAACGTTTTAACAAATGAGCGTGCTC
GTATATCAACCCATTTGTCAATTATTTGTTTCTTGAGCATGTCCTTGACA
TGCTGATTTGGAATGGCACGTGATAAAGCATCCCAGGCTAGCGACACCga
acgattttttgaaatttcagcaTCCAATAAGTCTCTGATGTCTTCATTAT
CATAGCTCATAATAAAGTCTTTATTCAAAATTCTTTGAACTGCTCTCTCA
ACTCGACGGATAAAATAGAACATGTCATCTGAAGCGATTACCAAACCACC
TCTGATGGAGATTTCGGTCCATTCTTGAATAGAGTTTGCAGAGCACGTAA
AACTGTTTACCCTCAAAGACTTTAAAAACGTAAGGACGGTGGATGCAACC
AAGCTGTTTTTCTTACGATTCAATCTGTTGTACTTTTTCTCCAGAGCAAA
AATTAAATACCCTGCAATGAAATGTAGAACCTGCTGATCTTTTTCGGGTA
TGCTGACTTCAGATGTGTCAAGGGTTGCTTCATTGCCATCGATGGATTCA
TCAGAAATATTCAACTTTATCATACTTTCAACTGTACTGACAACAATAAA
TTGGTGTAAAGTTGAAACTACTGGATGCTTGTGATCGAATTCTGATTTGA
TCAAATCAAGTAGACCTGCGTAGTCATTTGTTTTCTGAGTTGTCTTGTGG
ACTGATCTCCAAAGCTTCTCTCGGTTAATTGGTTTTAAAAAGTCAGTTTG
ACTGACAAACTCAAAAATTTCTGTAAAATGCTTAACAGCAAAATTTTTGA
ATATTTGATTTTCCTTCACTGCGAGAATGGATCGGGCAAGGTCAGCAACA
AGATTTCCCTTGGTTTTGGTGGAACCAACAGCTAGATTATTGATTGGGTC
ATCCCTTGATGATTCGAGTATGTTGCACAACATTTGTACCATGTTGGCTT
CGACAACTTGGTCAATATCATAGCTGATGTAGG Run BLAST on NCBI protein sequence of Zn-finger transcription factor >TCONS_00013192-protein ID=TCONS_00013192-protein|Name=Zn-finger transcription factor|organism=Clytia hemisphaerica|type=polypeptide|length=351bp
YISYDIDQVVEANMVQMLCNILESSRDDPINNLAVGSTKTKGNLVADLAR
SILAVKENQIFKNFAVKHFTEIFEFVSQTDFLKPINREKLWRSVHKTTQK
TNDYAGLLDLIKSEFDHKHPVVSTLHQFIVVSTVESMIKLNISDESIDGN
EATLDTSEVSIPEKDQQVLHFIAGYLIFALEKKYNRLNRKKNSLVASTVL
TFLKSLRVNSFTCSANSIQEWTEISIRGGLVIASDDMFYFIRRVERAVQR
ILNKDFIMSYDNEDIRDLLDAEISKNRSVSLAWDALSRAIPNQHVKDMLK
KQIIDKWVDIRARSFVKTFIQSIRRKLRNESQNNDGGPSAATEVALRKKL
S Run BLAST on NCBI transcript from alignment at sc0000162:390481..391613 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00013192 ID=TCONS_00013192|Name=TCONS_00013192|organism=Clytia hemisphaerica|type=transcript|length=1133bp|location=Sequence derived from alignment at sc0000162:390481..391613 (Clytia hemisphaerica)
CCTACATCAGCTATGATATTGACCAAGTTGTCGAAGCCAACATGGTACAA
ATGTTGTGCAACATACTCGAATCATCAAGGGATGACCCAATCAATAATCT
AGCTGTTGGTTCCACCAAAACCAAGGGAAATCTTGTTGCTGACCTTGCCC
GATCCATTCTCGCAGTGAAGGAAAATCAAATATTCAAAAATTTTGCTGTT
AAGCATTTTACAGAAATTTTTGAGTTTGTCAGTCAAACTGACTTTTTAAA
ACCAATTAACCGAGAGAAGCTTTGGAGATCAGTCCACAAGACAACTCAGA
AAACAAATGACTACGCAGGTCTACTTGATTTGATCAAATCAGAATTCGAT
CACAAGCATCCAGTAGTTTCAACTTTACACCAATTTATTGTTGTCAGTAC
AGTTGAAAGTATGATAAAGTTGAATATTTCTGATGAATCCATCGATGGCA
ATGAAGCAACCCTTGACACATCTGAAGTCAGCATACCCGAAAAAGATCAG
CAGGTTCTACATTTCATTGCAGGGTATTTAATTTTTGCTCTGGAGAAAAA
GTACAACAGATTGAATCGTAAGAAAAACAGCTTGGTTGCATCCACCGTCC
TTACGTTTTTAAAGTCTTTGAGGGTAAACAGTTTTACGTGCTCTGCAAAC
TCTATTCAAGAATGGACCGAAATCTCCATCAGAGGTGGTTTGGTAATCGC
TTCAGATGACATGTTCTATTTTATCCGTCGAGTTGAGAGAGCAGTTCAAA
GAATTTTGAATAAAGACTTTATTATGAGCTATGATAATGAAGACATCAGA
GACTTATTGGAtgctgaaatttcaaaaaatcgttcGGTGTCGCTAGCCTG
GGATGCTTTATCACGTGCCATTCCAAATCAGCATGTCAAGGACATGCTCA
AGAAACAAATAATTGACAAATGGGTTGATATACGAGCACGCTCATTTGTT
AAAACGTTTATTCAAAGCATTCGTCGTAAACTTCGAAACGAATCTCAAAA
CAATGATGGAGGTCCTTCCGCAGCAACAGAAGTGGCACTCCGAAAAAAAT
TATCTTGATTTTTacatttgtatatttttatcaTTTGAGTGTATGTAGAG
TGTATTTATATTTATAGAATCTTACTTTCCTTA Coding sequence (CDS) from alignment at sc0000162:390481..391613 >TCONS_00013192 ID=TCONS_00013192|Name=TCONS_00013192|organism=Clytia hemisphaerica|type=CDS|length=1056bp|location=Sequence derived from alignment at sc0000162:390481..391613 (Clytia hemisphaerica)
TACATCAGCTATGATATTGACCAAGTTGTCGAAGCCAACATGGTACAAAT
GTTGTGCAACATACTCGAATCATCAAGGGATGACCCAATCAATAATCTAG
CTGTTGGTTCCACCAAAACCAAGGGAAATCTTGTTGCTGACCTTGCCCGA
TCCATTCTCGCAGTGAAGGAAAATCAAATATTCAAAAATTTTGCTGTTAA
GCATTTTACAGAAATTTTTGAGTTTGTCAGTCAAACTGACTTTTTAAAAC
CAATTAACCGAGAGAAGCTTTGGAGATCAGTCCACAAGACAACTCAGAAA
ACAAATGACTACGCAGGTCTACTTGATTTGATCAAATCAGAATTCGATCA
CAAGCATCCAGTAGTTTCAACTTTACACCAATTTATTGTTGTCAGTACAG
TTGAAAGTATGATAAAGTTGAATATTTCTGATGAATCCATCGATGGCAAT
GAAGCAACCCTTGACACATCTGAAGTCAGCATACCCGAAAAAGATCAGCA
GGTTCTACATTTCATTGCAGGGTATTTAATTTTTGCTCTGGAGAAAAAGT
ACAACAGATTGAATCGTAAGAAAAACAGCTTGGTTGCATCCACCGTCCTT
ACGTTTTTAAAGTCTTTGAGGGTAAACAGTTTTACGTGCTCTGCAAACTC
TATTCAAGAATGGACCGAAATCTCCATCAGAGGTGGTTTGGTAATCGCTT
CAGATGACATGTTCTATTTTATCCGTCGAGTTGAGAGAGCAGTTCAAAGA
ATTTTGAATAAAGACTTTATTATGAGCTATGATAATGAAGACATCAGAGA
CTTATTGGAtgctgaaatttcaaaaaatcgttcGGTGTCGCTAGCCTGGG
ATGCTTTATCACGTGCCATTCCAAATCAGCATGTCAAGGACATGCTCAAG
AAACAAATAATTGACAAATGGGTTGATATACGAGCACGCTCATTTGTTAA
AACGTTTATTCAAAGCATTCGTCGTAAACTTCGAAACGAATCTCAAAACA
ATGATGGAGGTCCTTCCGCAGCAACAGAAGTGGCACTCCGAAAAAAATTA
TCTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00013192-exon-sc0000162-1491911889:390481..391613 | TCONS_00013192-exon-sc0000162-1491911889:390481..391613 | Clytia hemisphaerica | exon |
| TCONS_00013192-exon-sc0000162-1510915933:390481..391613 | TCONS_00013192-exon-sc0000162-1510915933:390481..391613 | Clytia hemisphaerica | exon |
| TCONS_00013192-exon-sc0000162-1575043694:390481..391613 | TCONS_00013192-exon-sc0000162-1575043694:390481..391613 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000162 | supercontig | sc0000162:390481..391613 . |
Blast
The following BLAST results are available for this feature:
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