XLOC_009439 (gene) - C. hemisphaerica

Overview
NameXLOC_009439
Unique NameXLOC_009439
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000253:291217..296698+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_009439 ID=XLOC_009439|Name=XLOC_009439|organism=Clytia hemisphaerica|type=gene|length=5482bp|location=Sequence derived from alignment at sc0000253:291217..296698+ (Clytia hemisphaerica)
ttgtttgtttttttcctgCTCCTGATTTCTTCTTTTAGTTAGTGTCCTCC
TTTAACTTTATCCTTTCCTTCCCTTCTTCTGTTCTTTCAGTCTTTCGACA
TTCGAGATGAGAATTTGATTTGGGCTGCTGATTTGACAAAGTTAAAAATG
GTAGGCAAAGATGCAGAGGAAGGCGGCGTTGTCTCGATTAGTCATACGGG
TTGGTTGAGTGAGAAAGTTTATAGAGTCTTTTTATTACTTAGATAAGAAT
ATTAACTCTGAAGACAAAGGAAAAGGCTGTATCACCGTAGTAAAATAAAC
CTTTAGCTTCGCTACCATGTGACAACATGTGGAAAGCACATTGTTTTGAT
TCTCGCAGCATTTACTCAAACTTCCTTCGCCTCCTACTACCACGGAAAAG
TTCGACTTCTTTTATTTATCTACtgcttcttcaaattttgatttttctag
agAAGAAATGACAAGCCTTAATGTTTTACTGGAAGCTGCTAAAGCTGTTG
ATATAGGTAAGATTACTTAACTATGGTTTTATTATTAGATTTTAgatcta
aaaaaagtttttgaaaagcaCATGGTTCGGGTTCGAAGCACGTGGCAACG
TGGCGCCATTTTTTGGATACCAATATTTTATACTTTTACCTTTTTCTAGA
TTCCCcttcaatcaaaagaaaaaggaaCAGCTCTAGCAGATCAAAAAGAG
ATATATTGGAAAGAACCCCTGGGTAGGAAACTAATTTTATGATGTTTGTA
GTGCTATCTctgtttctatttatttttaggcattttttgaCTTGTATAGA
GGGGTCCCCCANTCCATCTCTGTTTCTATtcatttttaggcattttttta
CTTGTATAGAGGGGTCCCCCAGCGGTTATGTGTGAATGCATGAATGAGCA
TTTTCAATTGCATGAATGCGTGATAATTGAATAAAAGTGCGTGAATTCGT
GACTTGAAAAAACTTGCATGAACgtgaaaaaacactttttgattgcgGGA
ATGCGTAAATCTGGGCTATtatgcgtgaatacgtgaattttccttttttt
ccacCGATTATGTGCAGTTCTCctaattttcgaatgtttcccCAATTTCT
TTCCGAAAATGTTCTGATTGTCTGAGAAATATAGGgtggttattgcgtga
aactcgaggaaaatttgcgtgaatgcttGAATTTCGATGAAGTTCTAATG
CTGCCTTGCTTTTTCTTGTATTTAACATTTCTGtctttaattatttttta
ggGGAGGAAATCGTCAAACTCATAACATCTTGGAAAAGAATAGGTATGAA
TAATTTGCCTTGTAATAAACTCAATCTATATTAACTCTGCTGAATTTACT
GAATCTGTCATTGAGCACTAAGGATATTTTATCTCAATTTGGGGTTAGTC
TAAAAATCAGGGTAGCTAATAATTTAgctagccaattgggctaggcagtt
gggtgtttaagataaaaacggcaattattgctgtttttggaaagaaaagt
tgattttataatTGAACACATGGTAGTAGATAGCTTAGAAAGGTTAAAAA
gactttcttaaatttttgatgatggattgtagataaacccttttcatTTA
GAATTGACTAGACGATTCCCGTCGTCacaaacgccggtttagcttgcgca
tcaaaagcccttaggatgaCAAAGATGGTATTGTTGATGCTGTCTCTAAC
TTTATCTTGAAGGGGGAtttgaattacttttttattgacCACGGGAGTAT
AATGAGAAGTGTTACTTAAGATGTCTTGTAAATACCTTTTCATGCttcaa
ttaaataaaataagAGAATGGGACTTGAAATCTTCACCATAAATATATGA
GCTTAGTAAATAATAAACCTTcaattatgagagtttcttcagGAAGTTTG
AAAGCGATTTTAATTAAATCGAAAACGGGAACTTAATTGAGTTATAGTCA
AATTAAGAGCTTCAATATATTATCAGTGAATAAGATTGGAAAAGATATAT
AAAAATGTTGCTATATTTACAAATTTCAGGTTGACATGATGCGCCTTATA
ACACAAAATAATAaatactttgatttcaaaacaatcttTTATCCACTTCT
CGATCGGAAGACCTCTGTTTTTTACCTGTGCAttgactaccttatcggcc
ctttctTCCAATTAGGGCCAGTTTATCGGCATTTTTGGGCTCACTTAGTG
TAATAAGAGCCGGTGTAAAAAAAGctaagattttgaaattttaaactaAA
AGCGACATTAATTTTTTagcattatttctcaatttaaaggattttaggta
tgattggAAGACGAAAGTTATCCAtcgttttactccatatttaaaacttc
agtgaaatatttaatatatttaaaaatcagtgattttcgatagaattttc
aacagttttctACTgactaatttgaagcataagtagccatttttacaaat
cttGGCATTATTAAcagccctaattggcgtaagcccaaaattaggctgtg
gcgtaataagggccggcgtaaaaggggctgGTGTTAAATTTGAGTCTGCG
TAAAAAGGGCAGATAAGGTATTTTAAACtgtatttttacaaaatctttGG
TAGAAAGTACCACGCCTTctaaagttcgaaaatctaagTCACTTGGTGTT
TTaaataattgacgtcagagttattttcattaaaaagtcaCTGTATGGGC
TTCTTCGATTCGAACGTCAAATCCTTTTTTGGACAGGGCTTTTATCAGAA
GGTAGTGCTAATTTACGAGCTCAATCatagataaaaatgaaatttcaaac
atAAAATTCAAACCACGACGTATCATCAACTGCTTTTTCAAAAGACAATA
AgatttttttgtcttaaaactGCACGAAAGCCGTCTTTCATACTCGAATC
AACCCcctggcaaaatttgagaataacagctcagctaccatcttgcgtta
cacacatttttcataaactcatttattATGACATATTGTTTTAAGAAGTT
CCTCCTCTGAGAGTGGGAATTCGCTCAGCCTACACCAAGGTTTTCTCTAG
CATCCGCAGGTAGCAAGAATAAAGCCTGGGATGCACGGGGACAATGTTGA
GTACTTGTTAAAGTCAACAAGGATATCTCAATTCCTGCTTAAGTGACCAC
TATAATTCACTAGGACAGTCTTAACATACATTAAAATAAGTGCATTAGAA
TGAGAATAGCTGTTTTCAGATGAGgttttaaatttcaacaaagAGGCAAC
TAGCCATTtcccaaaagaaattttgctatAAAGTGCTGAATTGAATATTT
TACTGAttttattgtgttttttttggaaaattctttcTTAGGAGAGCCGA
ATTGAAGACCTTCttccaaaaattaaaagaaactGTACCCATCCTACAAA
ACCGTCCAAAAGCTTCAAATGTCAGTGTGCTAACTGAATCAATGAAATAT
ATACAGgtattactttaggcgtacaaacttttgcaagCAGAAACTTTAGC
GAATTTTTAATTGATTAATTCAAGATGAAAGACCCctaaaaatctttgta
aattgtggctaattttgtaatttcaaaaaattttaaatcgggattttttc
aaaaaccccTGGGGAAGTGAGAGAAATAATTTGCAAAAGAGgctgatttg
caaaattttgtccATACAAAGATCTTAGTTCTtcaattcacaaaaaaaaa
tccaCATGAAAATTAACTCACTGAAGGATTTTGAACCCTACTTTCAGTAA
TTGAGCCATTACCAGGATTTCTCAGACAACCttcataatatttttaaagC
TAGTTATATAAGTAACTTGAGAGTTCCGACTAAGATTGAATTTTAACTGA
TTTTCAGATGCCAAATCGATAATCATGGAAAGGTTTTCAAGGCTTCGAGA
TGTAGCCTCACATTATATTGATTTTAAACCAAAAAATtagcaaagttgat
ttcaaGCAAACACTCAGTACAATAGATTATTTTaatcaaattatcaaaaa
acTATTTATTATACATGAATTACTTAAAAAGTTTCGAAAGAGTATCAATG
AAGGTTCCTTTATCAGCCTTTATGTGAAATATGTTTATGTTCAATAAATA
TGTCTCATCGTGGGTATTGGCATACTAATGCTGGGCTAGCGCTCTAGTGT
GAGCGTTTCCCAAATATTGTTGACTCAACATGTTCGGGTCTTTCAGtcga
aacaaaacctttaaattcccaaattttctattttagaccaaaatctttga
aaatattctaaaatttgACAACATCCTTAAAAAGCTATCCACAAAATTTT
AGTATTCAGGCCAACACTAAACTAGAAAATAATAGGGTTCCAATCTTGTT
GTGATAGGAACTTTGCTAACCTGGCTTTGCTATGATTATCCTATTTTGTT
TTAGGAATTAAATGAAATTGACAAACAGCATTCACTCGAAATCACTCGTT
TAAGAAGATGTCGAATGTGTCTTGAAGAGCGaattaaaatgttaaaagaa
gaaattgataAACTACCACCTGAAAATAGGCCTAAAATTATATTCAAAGA
AACTCCTATCGAACCTGAAAGGGAAAGTACAGATCATGCTAACCCTTCTC
CTACTACTTCGACTGGAGCGCCTCCTAAAAAGCCGAAAAAAGAAATGGTG
TCTATAGAAATTCAAGCAAATGAGGAAGATATTCGTGATGCATTACCTGA
ATCGTATGCcgatgaaaaaacttttgaccaGCCGTTACCGGATGTTTTAC
CGGCTCACGAAACTTTAAAGTGTCAGCTTCACACTGAACCCTCTTCTGAA
GAAAGGTTGACAAATTTGAAAGATAAATTGATGCGAAAGCGAGTTTTGGA
GTCTATGTTGGATGGCGATGAAGATTCTGAAAATGACGAAGATGTATTAA
AAATTGTCTGCgaagaattgaaaatttgacggaCATGATCAATGCATATC
TTtatcaattcttttttcaaaaataatggtTCCTTTTTGGTTTTGACGGG
GACAAGTGTTGGTTAAAACCTTGTTTGTGCCAAAGCCTAAGTCAATTTTA
GTGTAGTTTTATACACATAGAATAAACTTTTCATGGAAATATGGTGATGA
TATTTCCCCTCTTATCCTTAATGTCAGTGGCTTAACATGCTTCTCATACA
TGATAAAAGGGTGATGCTTTGCAAACCTGGTAAAATGAAATGATTCGATT
ACATTATTTGACGCTTATAATCAATGATTAATGGTAGGCAGGAGTTCATA
AGTAAATTGAATTGAAGGGTTAATATCAAGAGAGCCTTTACTGGAAATCA
GTCGTTGTTCAAAATAAGTGAAAAGGGgatgtttattttgaaattcattg
cataatttataatttattgTGCTTTTCGATTAGAATTTTATGTGGAAAAG
ATAATTTATTTACAAAACGGCGTTCACTTGCAAAAGAAAACTTGAATTCA
ATATTCGTTGACTATGTTGAAAAAGATTGATC
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00016859TCONS_00016859Clytia hemisphaericatranscript
TCONS_00016860TCONS_00016860Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00016859-proteinTCONS_00016859-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000253supercontigsc0000253:291217..296698 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
51.63	51.12	11.16	7.48	58.86	43.43	22.34	23.53	11.14	9.4	13.93	9.1	11.93	13.26	12.63	10.51	11.12	10.26	8.19	7.41	19.34	20.38	103.11	78.66	10.07	15.3	8.63	10.34	49.66	59.32