TCONS_00012880 (transcript) - C. hemisphaerica

Overview
NameTCONS_00012880
Unique NameTCONS_00012880
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1412

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00012880 ID=TCONS_00012880|Name=TCONS_00012880|organism=Clytia hemisphaerica|type=transcript|length=1412bp
tttaaaagagaaaattgtcttttggtatttaaaaaaatgtgaaGCTGAGA
AAATTATGAGGTTGGATACTCAGTATACATTATTTTTTACAATCTTAATA
ATTTGCATTACCGTTGGTTATTCTCATGTTCTACAACTCAAACAATGTCG
AAACTTTGATGCAGAATTCTCAAAAATCACATATGGTCAACGATTACTTG
GAGATATATTTAAAACGTTAGATTCAATATCTTTACGGCGATGTCTAACC
AAATGTTTGTATTATATGGGTTGTCTCTCTGTTAATTACATGCggaccaa
tcaaatttgcgAGATTTTAGGGAACAGCTTACAACGAAATTCATCAGCTG
CGCTCTCATCCAATGAAACTTGGAATCATTTCGAAACAAACTACAATAGA
CGAACGATTGGTATTTCGTGTTTCAAAAGCAATCCCTGTCCTGCAGATAA
ACGTTGCGTGGATAATTGTGATGGTCTGACCACTTGTGTATCTATTACAG
TTGAATCATTGCGAGGTCACCTTACTACAATCACCGCATCAACAGAATCG
CCCAGTTGGGGATCAGCTTCAAAAGCATTTGATGGTTCGGAGACGTCTCA
ATGGCATACACAAGGTGGTGCTTCTCAAAAACATTGGATCAAGGCAGAAT
TTCAATCGCGTGTGTTTGTGGATTACATAGTATTCGTCAATCGATTTGAA
CAATTTATAGACATGCGAAACAATAACATGGACCTCTTTACTAGCATATC
TGTTGGCGGTGCACAAGATCGTTATATATGGTTTGCAAACACAGGTGATT
TAGAGGGTAAAAAACGAAGAATGTTTTCGTGTATGAGGTATGCTGATGCT
TTTTATGCTGAACAACCTCAAGGTTTAAGTAACACCGTCAACATTATGGA
GGTATGGATTTATGGTGCCCAAGTCTAAATAAGGAATCTGTAATCAAGAG
TTTGCCAAGAGAAAATGTAAGCAAGTtttatgtacacgtttttttataag
aatagactttataagaatgtccatgatgaaaatggccaaaaaattgaaca
taatgctaagaatatcaccatcatggaattttgctactcaagctaagaat
gccatttttagagcatttttaattAGAAATAGTCATACCAAGTTAAGAAT
GCCATTCTTAGagtattttcaattataaatagTCATAATCCcaaagtaag
gctcactcctttcacaaaaatcatGGTTttagcccacttttcaggtgccc
ccattgaagcatggtgcccccaacgagttaggtccccttgagaaattACT
TTGAGTTAAGTACCCCTATTCAgccgataatttttttgaattgacacttt
ttgttcttttgtcattcctaaaatcttaatgatttttaaatctttctaat
gatgaagaagaa
Run BLAST on NCBI

protein sequence of TCONS_00012880-protein

>TCONS_00012880-protein ID=TCONS_00012880-protein|Name=TCONS_00012880-protein|organism=Clytia hemisphaerica|type=polypeptide|length=308bp
LKEKIVFWYLKKCEAEKIMRLDTQYTLFFTILIICITVGYSHVLQLKQCR
NFDAEFSKITYGQRLLGDIFKTLDSISLRRCLTKCLYYMGCLSVNYMRTN
QICEILGNSLQRNSSAALSSNETWNHFETNYNRRTIGISCFKSNPCPADK
RCVDNCDGLTTCVSITVESLRGHLTTITASTESPSWGSASKAFDGSETSQ
WHTQGGASQKHWIKAEFQSRVFVDYIVFVNRFEQFIDMRNNNMDLFTSIS
VGGAQDRYIWFANTGDLEGKKRRMFSCMRYADAFYAEQPQGLSNTVNIME
VWIYGAQV
Run BLAST on NCBI

transcript from alignment at sc0000157:142695..148883+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00012880 ID=TCONS_00012880|Name=TCONS_00012880|organism=Clytia hemisphaerica|type=transcript|length=6189bp|location=Sequence derived from alignment at sc0000157:142695..148883+ (Clytia hemisphaerica)
tttaaaagagaaaattgtcttttggtatttaaaaaaatgtgaaGCTGAGA AAATTATGAGGTTGGATACTCAGTATACATTATTTTTTACAATCTTAATA ATTTGCATTACCGTTGGTTATTCTCATGTTCTACAACTCAAACAATGTCG AAACTTTGATGCAGAATTCTCAAAAATCACATATGGTCAACGATTACTTG GAGATATATTTAAAACGTTAGATTCAATATCTTTACGGCGATGTCTAACC AAATGTTTGTATTATATGGGTTGTCTCTCTGTTAATTACATGCggaccaa tcaaatttgcgAGATTTTAGGGAACAGCTTACAACGAAATTCATCAGCTG CGCTCTCATCCAATGAAACTTGGAATCATTTCGAAACAAACTACAATAGA CGAACGGTAAGAATTTGAAAATGGCCGCATCCAATGAAATTGGAATCTAA AAGTTGCATTTTAGATACAATAANTTACGATAGAAAAACGGTAAGAATTT AAAAATGGCCGCATCCAATGAAATTGGAATctaaaaaatgcattttagaT ACAATAAAACAGCCGTAATGACGGCTTCAAACTCCAggaattgtgatttt tgaatagtgaaccattacacgtttttttcttttattagaacccagtttat aagaacatcgaggctgaaattcgtcgaaaatttaagaacatcgtaagaac atgcccagcctcagtttggaaaaaaatgacaagaaactacaattttttcc tcttttcaagcagttttaatcaaacttaggaatggattttctaaatcgag agtcaaatattgtccaaattttaccaattttaagtgctctttattttgca tgatattgttgtcgatttagagtagtatgaaaatttaagaacgcatctaa gaacatttcaggctgaaaattgctaaaaaaataagcacatccaggctcag ccaaattttaggtgttctaataaaaaaaaaaacgtgtatgcaaaCATCTT TATCGTGGTCAGCCTTTTTCTAATATATCTAACATAAACCTTAAAAGAGT ATATCCTAGTAAGTGCGAGCGCAAATGCAAACCAAATCAGGAAATCAAAC CGGAAAGATTGGGAAATCGAACCTGACTATCGCGATTAATCggatttacg cacaattacaaatgaaaaacactgattttatgAAACTCCTTAACCAGAGT TtaaccatgccaaatttgaacaaaaaatagaTTCAGGAGGTGATATTTGA AactatttttgtccatttacaACGGATAGACGGCGAGAAAAGAAACCTTT CTCTAGCTAAAACATATTTAAGAAAATATGGTTTCACAAAACTCGAGTCT AGTCCTTTAGTTcactttttatgattctgatagcgctcgcTTCCATTAGT AAACTCAAAAAGTGGTGCAGGTGGTTCTAGGCATGAGATTGAGATCCCAT AACCTTTTTGCACATTCCAACCGCTATTACACGATTAACTTTTTTTCTAG ATTGGTATTTCGTGTTTCAAAAGCAATCCCTGTCCTGCAGATAAACGTTG CGTGGATAATTGTGATGGTCTGACCACTTGTGTATCTATTACAGTTGGTA AGGCATTATCTACATTAAAGTCCACTCTCGTTTGTTGGGTCGTTGGGTCT CATAGTTCCAAATAAGGGGCTTTAGAAAAAATGGACTCTAATTCGAAATT TGCGGGGCATTCTGTTTTTTTTGCACACTGGTTCGtgatagaaaatgaaa aaaattaaaaccaaacATTTTTCCCATAATGCCAACAATTTTTGCACAAT TTACACCACAATTTTGCTGTATGAATGTTCTCAAAGTAAGTAAGTCtacg accgcagtcggaggcgacccgaagactCCTCTTTCGGGtactctttcgat agctatctacccgaaggaaggggagggcgccactctttctccctgggtTG CTCCCTACTTACCCTTGAtcattctcttaattgctgagcatcaagcagag aggcatcaagtaccattttgggaatctttggtatgacccggctggggctT GAACACACAACCTTgagaaccgtagccggatggtATACCACTGCACCACG GTCGATATCTCAAAAGACATTTAAAATGGCTTTCTATTTAGAATCATTGC GAGGTCACCTTACTACAATCACCGCATCAACAGAATCGCCCAGTTGGGGA TCAGCTTCAAAAGCATTTGATGGTTCGGAGACGTCTCAATGGCATACACA AGGTGGTGCTTCTCAAAAACATTGGATCAAGGTTCGTTTTATTTTCTGGT TACTATagctaaaggcttggggacacaagAAGTCTTTTTCGCTTTGGTGC AATACAAagtgctccatcccaccaacacaagaaaaaagtgcgtgtcccat ggtttctttttttgtttcatgggacaataAGTGagagaaatacccaaaag acacatTGATTTTGTCCCTgagacaatggagcaaaattgattaaGTGAGA GAACTGAGAGACAAACAAATGTTATCAAAAGTCTTGTCGAcggatttcac ttttattggtataAAGAAGACACAAGAAAGCGTTTCAgattggtgggatg gagcatgttgaattgcaccaacgcgaaaaagaCTTCTCGTGTCCCAAGCT TAACTCTTGtaaatacacaggttgcaagaTTAAAGTCTGaaggggtttgt acttttacggtgtgacgcgATAGGccctttttagtacggtattacgggat ttgacgaaaaaagagacgggaaaacggtattttaaaatcagacggtgacg gtatttaggcaCTTTTTTGCCCggtacaagccggtgtgacggtgttatta ttttttccattttcgggattccgggattcagcaaaagttttgacgggaaa acggtagtTTAAAATCAGACGGGGACGGTATTTAGGCACTTTTTTGCCCg gtacaagccggtgtgacggtgttattattttttccattttcgggattccg ggattcagcaaaagttttgacgggaaaacggtatttcgaacccctccaac ccccccccccctgaagacaaatcacgcttttacccaacatttttatgtgc ttgttgcatgacatttatttctgattggttcgaaaacTAATGTTATCAGC TGTGTGTTGTAAAGTAAGAAACATGGTAGCgaaacatgggaataaaatca cgtgaactttttcgagtaatcacatgtttttaCTGCATTGATACagtttt gcaacccgtgtatttcAACTTCTATAGACCGCGTGGGCatatttttgtcc gttttatcaATCTAAAACCTTCCCAGTCTTTTTTCcacacctatagacaa tagaaaaaaaggtgtaaaaaaaggatcGAATCGAGTTTAGGAAGATAATT AAATATAATAAAGTCggacgcgcctgaccgcgcgactacggttgaAAAGA TGTATTAGCGTTCGAATTAACAAGAAAAGTCGTTACAGTTGGTATAGTGA GGTCTACTCACAGAAGAAGGTAAGAATGCTTCAGGTAATGATTAAATGCA TGAAATACACCACAGAGGgtttaaaattaatttcaagTAGTAGCGTTGAA TTATTTCACCTGACCACCTGCTAGATGACCATTTCAAACTTCATTGTcct aattttgatattttgacgaaaacgtttcacctacattttggggttTCGCT GACCATTATTTTGAGGGTCTTTATAACCCAACATATAAAAGTCTGCAAAT AACTCATAATAAGAAAGTACAGCCTGAGatgttgacattttgagctttta cgacGGAAAGAATTAACGAAAGGTTACTCGATCATTACACCCCTGTGtaa cagacccgctgggactcCCAGCCCGGACAGAAAATTTGCTTAAGCTTGAA AAGAATAGAATTCCTTTCCTCCTTGGGACTTTGACAGAAATTTTTGTCCA CACTTTGGGAAAAGGGCTGCGAGGCAGAGGTGCTGtatttcaacacaaaa ttttctttttccctAAATTAACACAAAAATTCTTCAACATCAACTACTTT TTAATTCTACATTAGATCTGGTTCAATATCTTAGTTGAGAACtgcaaaat ttcgttgaaaacgTATATGAATTCATATCATTTGTTCTTGTTGTTAAAAA GCGGGCATTAATTGTTTCactaatttatcatttttatcatctttttAAAA GGCAGAATTTCAATCGCGTGTGTTTGTGGATTACATAGTATTCGTCAATC GATTTGAACAATTTATAGACATGCGAAACAATAACATGGACCTCTTTACT AGCATATCTGTTGGCGGTGCACAAGATCGTTATATATGGTTTGCAAACAC AGGTAATACAATTACATTCGAGTCTACTTAACTCGAACCATAGATTTAAA ACTTAGGCTAGATGGCGTACTTTGGCTGAAAAATGTGCCGAGGTTAGgca ggaaatcctacctaaatcacgtgacattacaatagaatttcaacgcttga ccaatcagaagcttcgcaggttttcgaaaacaatagcggcaatatttttt ccgatatcaaatttttttgcctacAATGGCTTAAAGATCGACATCTGGAT CtagatctagcccttcgggctttataaatctacgACTCGAACACGCACAA AGGACCATAAAACTAGTTCGAATTAAGGAagcattcgaattatagaggtt cgagtaaAAGAGACtcccgggggggcactgggtttacggactgacggtat gtgcgggccaaaaattggcttttaaaattgcacccttacagtgcagcaaa aatcagtgaaaatcatacccttagagtgcattttcccccaaattttcgat ccctttcgtgcaaaaaatatggtcaaaattttggtcaaaatatctctgtt tttcaagaattttctgagatttctacccttacagtgcatctttagttttt ccgacccttacagtgcattttaaacatcttggaaaaggtacccttaggac ccgcacatacccgtcggtccttttgcccagctgcccccccccccgggggc cgGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNccccccccccccgggaagagactccattgtatcaa gcatttttagatttcttttttagagccaaagtttaaaaaatatataatat ttttaacacatccctgtgtcacagacccggttgaTCCGCTGGAAACtttg gccaaaatttcagccccattggGAAATCGAATTTGATTTCAATCCATTAA AAAGTCACTTTAAAAATTGAACTCCTGCTCCTTTGAGATtggaataatag aatttctattccaatgggattttgatagaaatttttgtccccgAGGGTAA AactttcaccggggctgtgagacaggggtgtttcatCTGAGGACATTGAC CTGAATACGAGACGtcttgaataaaaaataaaatcaaatcaatatatTTG TGCTTTTATTCATTTTAACAGGTGATTTAGAGGGTAAAAAACGAAGAATG TTTTCGTGTATGAGGTATGCTGATGCTTTTTATGCTGAACAACCTCAAGG TTTAAGTAACACCGTCAACATTATGGAGGTATGGATTTATGGTGCCCAAG TCTAAATAAGGAATCTGTAATCAAGAGTTTGCCAAGAGAAAATGTAAGCA AGTtttatgtacacgtttttttataagaatagactttataagaatgtcca tgatgaaaatggccaaaaaattgaacataatgctaagaatatcaccatca tggaattttgctactcaagctaagaatgccatttttagagcatttttaat tAGAAATAGTCATACCAAGTTAAGAATGCCATTCTTAGagtattttcaat tataaatagTCATAATCCcaaagtaaggctcactcctttcacaaaaatca tGGTTttagcccacttttcaggtgcccccattgaagcatggtgcccccaa cgagttaggtccccttgagaaattACTTTGAGTTAAGTACCCCTATTCAg ccgataatttttttgaattgacactttttgttcttttgtcattcctaaaa tcttaatgatttttaaatctttctaatgatgaagaagaa

Coding sequence (CDS) from alignment at sc0000157:142695..148883+

>TCONS_00012880 ID=TCONS_00012880|Name=TCONS_00012880|organism=Clytia hemisphaerica|type=CDS|length=4635bp|location=Sequence derived from alignment at sc0000157:142695..148883+ (Clytia hemisphaerica)
ttaaaagagaaaattgtcttttggtatttaaaaaaatgtgaaGCTGAGAA
AATTATGAGGTTGGATACTCAGTATACATTATTTTTTACAATCTTAATAA
TTTGCATTACCGTTGGTTATTCTCATGTTCTACAACTCAAACAATGTCGA
AACTTTGATGCAGAATTCTCAAAAATCACATATGGTCAACGATTACTTGG
AGATATATTTAAAACGTTAGATTCAATATCTTTACGGCGATGTCTAACCA
AATGTTTGTATTATATGGGTTGTCTCTCTGTTAATTACATGCggaccaat
caaatttgcgAGATTTTAGGGAACAGCTTACAACGAAATTCATCAGCTGC
GCTCTCATCCAATGAAACTTGGAATCATTTCGAAACAAACTACAATAGAC
GAACGATTGGTATTTCGTGTTTCAAAAGCAATCCCTGTCCTGCAGATAAA
CGTTGCGTGGATAATTGTGATGGTCTGACCACTTGTGTATCTATTACAGT
TGAATCATTGCGAGGTCACCTTACTACAATCACCGCATCAACAGAATCGC
CCAGTTGGGGATCAGCTTCAAAAGCATTTGATGGTTCGGAGACGTCTCAA
TGGCATACACAAGGTGGTGCTTCTCAAAAACATTGGATCAAGGCAGAATT
TCAATCGCGTGTGTTTGTGGATTACATAGTATTCGTCAATCGATTTGAAC
AATTTATAGACATGCGAAACAATAACATGGACCTCTTTACTAGCATATCT
GTTGGCGGTGCACAAGATCGTTATATATGGTTTGCAAACACAGGTGATTT
AGAGGGTAAAAAACGAAGAATGTTTTCGTGTATGAGGTATGCTGATGCTT
TTTATGCTGAACAACCTCAAGGTTTAAGTAACACCGTCAACATTATGGAG
GTATGGATTTATGGTGCCCAAGTCTAAttaaaagagaaaattgtcttttg
gtatttaaaaaaatgtgaaGCTGAGAAAATTATGAGGTTGGATACTCAGT
ATACATTATTTTTTACAATCTTAATAATTTGCATTACCGTTGGTTATTCT
CATGTTCTACAACTCAAACAATGTCGAAACTTTGATGCAGAATTCTCAAA
AATCACATATGGTCAACGATTACTTGGAGATATATTTAAAACGTTAGATT
CAATATCTTTACGGCGATGTCTAACCAAATGTTTGTATTATATGGGTTGT
CTCTCTGTTAATTACATGCggaccaatcaaatttgcgAGATTTTAGGGAA
CAGCTTACAACGAAATTCATCAGCTGCGCTCTCATCCAATGAAACTTGGA
ATCATTTCGAAACAAACTACAATAGACGAACGATTGGTATTTCGTGTTTC
AAAAGCAATCCCTGTCCTGCAGATAAACGTTGCGTGGATAATTGTGATGG
TCTGACCACTTGTGTATCTATTACAGTTGAATCATTGCGAGGTCACCTTA
CTACAATCACCGCATCAACAGAATCGCCCAGTTGGGGATCAGCTTCAAAA
GCATTTGATGGTTCGGAGACGTCTCAATGGCATACACAAGGTGGTGCTTC
TCAAAAACATTGGATCAAGGCAGAATTTCAATCGCGTGTGTTTGTGGATT
ACATAGTATTCGTCAATCGATTTGAACAATTTATAGACATGCGAAACAAT
AACATGGACCTCTTTACTAGCATATCTGTTGGCGGTGCACAAGATCGTTA
TATATGGTTTGCAAACACAGGTGATTTAGAGGGTAAAAAACGAAGAATGT
TTTCGTGTATGAGGTATGCTGATGCTTTTTATGCTGAACAACCTCAAGGT
TTAAGTAACACCGTCAACATTATGGAGGTATGGATTTATGGTGCCCAAGT
CTAAttaaaagagaaaattgtcttttggtatttaaaaaaatgtgaaGCTG
AGAAAATTATGAGGTTGGATACTCAGTATACATTATTTTTTACAATCTTA
ATAATTTGCATTACCGTTGGTTATTCTCATGTTCTACAACTCAAACAATG
TCGAAACTTTGATGCAGAATTCTCAAAAATCACATATGGTCAACGATTAC
TTGGAGATATATTTAAAACGTTAGATTCAATATCTTTACGGCGATGTCTA
ACCAAATGTTTGTATTATATGGGTTGTCTCTCTGTTAATTACATGCggac
caatcaaatttgcgAGATTTTAGGGAACAGCTTACAACGAAATTCATCAG
CTGCGCTCTCATCCAATGAAACTTGGAATCATTTCGAAACAAACTACAAT
AGACGAACGATTGGTATTTCGTGTTTCAAAAGCAATCCCTGTCCTGCAGA
TAAACGTTGCGTGGATAATTGTGATGGTCTGACCACTTGTGTATCTATTA
CAGTTGAATCATTGCGAGGTCACCTTACTACAATCACCGCATCAACAGAA
TCGCCCAGTTGGGGATCAGCTTCAAAAGCATTTGATGGTTCGGAGACGTC
TCAATGGCATACACAAGGTGGTGCTTCTCAAAAACATTGGATCAAGGCAG
AATTTCAATCGCGTGTGTTTGTGGATTACATAGTATTCGTCAATCGATTT
GAACAATTTATAGACATGCGAAACAATAACATGGACCTCTTTACTAGCAT
ATCTGTTGGCGGTGCACAAGATCGTTATATATGGTTTGCAAACACAGGTG
ATTTAGAGGGTAAAAAACGAAGAATGTTTTCGTGTATGAGGTATGCTGAT
GCTTTTTATGCTGAACAACCTCAAGGTTTAAGTAACACCGTCAACATTAT
GGAGGTATGGATTTATGGTGCCCAAGTCTAAttaaaagagaaaattgtct
tttggtatttaaaaaaatgtgaaGCTGAGAAAATTATGAGGTTGGATACT
CAGTATACATTATTTTTTACAATCTTAATAATTTGCATTACCGTTGGTTA
TTCTCATGTTCTACAACTCAAACAATGTCGAAACTTTGATGCAGAATTCT
CAAAAATCACATATGGTCAACGATTACTTGGAGATATATTTAAAACGTTA
GATTCAATATCTTTACGGCGATGTCTAACCAAATGTTTGTATTATATGGG
TTGTCTCTCTGTTAATTACATGCggaccaatcaaatttgcgAGATTTTAG
GGAACAGCTTACAACGAAATTCATCAGCTGCGCTCTCATCCAATGAAACT
TGGAATCATTTCGAAACAAACTACAATAGACGAACGATTGGTATTTCGTG
TTTCAAAAGCAATCCCTGTCCTGCAGATAAACGTTGCGTGGATAATTGTG
ATGGTCTGACCACTTGTGTATCTATTACAGTTGAATCATTGCGAGGTCAC
CTTACTACAATCACCGCATCAACAGAATCGCCCAGTTGGGGATCAGCTTC
AAAAGCATTTGATGGTTCGGAGACGTCTCAATGGCATACACAAGGTGGTG
CTTCTCAAAAACATTGGATCAAGGCAGAATTTCAATCGCGTGTGTTTGTG
GATTACATAGTATTCGTCAATCGATTTGAACAATTTATAGACATGCGAAA
CAATAACATGGACCTCTTTACTAGCATATCTGTTGGCGGTGCACAAGATC
GTTATATATGGTTTGCAAACACAGGTGATTTAGAGGGTAAAAAACGAAGA
ATGTTTTCGTGTATGAGGTATGCTGATGCTTTTTATGCTGAACAACCTCA
AGGTTTAAGTAACACCGTCAACATTATGGAGGTATGGATTTATGGTGCCC
AAGTCTAAttaaaagagaaaattgtcttttggtatttaaaaaaatgtgaa
GCTGAGAAAATTATGAGGTTGGATACTCAGTATACATTATTTTTTACAAT
CTTAATAATTTGCATTACCGTTGGTTATTCTCATGTTCTACAACTCAAAC
AATGTCGAAACTTTGATGCAGAATTCTCAAAAATCACATATGGTCAACGA
TTACTTGGAGATATATTTAAAACGTTAGATTCAATATCTTTACGGCGATG
TCTAACCAAATGTTTGTATTATATGGGTTGTCTCTCTGTTAATTACATGC
ggaccaatcaaatttgcgAGATTTTAGGGAACAGCTTACAACGAAATTCA
TCAGCTGCGCTCTCATCCAATGAAACTTGGAATCATTTCGAAACAAACTA
CAATAGACGAACGATTGGTATTTCGTGTTTCAAAAGCAATCCCTGTCCTG
CAGATAAACGTTGCGTGGATAATTGTGATGGTCTGACCACTTGTGTATCT
ATTACAGTTGAATCATTGCGAGGTCACCTTACTACAATCACCGCATCAAC
AGAATCGCCCAGTTGGGGATCAGCTTCAAAAGCATTTGATGGTTCGGAGA
CGTCTCAATGGCATACACAAGGTGGTGCTTCTCAAAAACATTGGATCAAG
GCAGAATTTCAATCGCGTGTGTTTGTGGATTACATAGTATTCGTCAATCG
ATTTGAACAATTTATAGACATGCGAAACAATAACATGGACCTCTTTACTA
GCATATCTGTTGGCGGTGCACAAGATCGTTATATATGGTTTGCAAACACA
GGTGATTTAGAGGGTAAAAAACGAAGAATGTTTTCGTGTATGAGGTATGC
TGATGCTTTTTATGCTGAACAACCTCAAGGTTTAAGTAACACCGTCAACA
TTATGGAGGTATGGATTTATGGTGCCCAAGTCTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007224XLOC_007224Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012880-exon-sc0000157-1491911889:142695..143100TCONS_00012880-exon-sc0000157-1491911889:142695..143100Clytia hemisphaericaexon
TCONS_00012880-exon-sc0000157-1510915933:142695..143100TCONS_00012880-exon-sc0000157-1510915933:142695..143100Clytia hemisphaericaexon
TCONS_00012880-exon-sc0000157-1575043694:142695..143100TCONS_00012880-exon-sc0000157-1575043694:142695..143100Clytia hemisphaericaexon
TCONS_00012880-exon-sc0000157-1491911889:144195..144291TCONS_00012880-exon-sc0000157-1491911889:144195..144291Clytia hemisphaericaexon
TCONS_00012880-exon-sc0000157-1510915933:144195..144291TCONS_00012880-exon-sc0000157-1510915933:144195..144291Clytia hemisphaericaexon
TCONS_00012880-exon-sc0000157-1575043694:144195..144291TCONS_00012880-exon-sc0000157-1575043694:144195..144291Clytia hemisphaericaexon
TCONS_00012880-exon-sc0000157-1491911889:144836..144975TCONS_00012880-exon-sc0000157-1491911889:144836..144975Clytia hemisphaericaexon
TCONS_00012880-exon-sc0000157-1510915933:144836..144975TCONS_00012880-exon-sc0000157-1510915933:144836..144975Clytia hemisphaericaexon
TCONS_00012880-exon-sc0000157-1575043694:144836..144975TCONS_00012880-exon-sc0000157-1575043694:144836..144975Clytia hemisphaericaexon
TCONS_00012880-exon-sc0000157-1491911889:146896..147046TCONS_00012880-exon-sc0000157-1491911889:146896..147046Clytia hemisphaericaexon
TCONS_00012880-exon-sc0000157-1510915933:146896..147046TCONS_00012880-exon-sc0000157-1510915933:146896..147046Clytia hemisphaericaexon
TCONS_00012880-exon-sc0000157-1575043694:146896..147046TCONS_00012880-exon-sc0000157-1575043694:146896..147046Clytia hemisphaericaexon
TCONS_00012880-exon-sc0000157-1491911889:148266..148883TCONS_00012880-exon-sc0000157-1491911889:148266..148883Clytia hemisphaericaexon
TCONS_00012880-exon-sc0000157-1510915933:148266..148883TCONS_00012880-exon-sc0000157-1510915933:148266..148883Clytia hemisphaericaexon
TCONS_00012880-exon-sc0000157-1575043694:148266..148883TCONS_00012880-exon-sc0000157-1575043694:148266..148883Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012880-proteinTCONS_00012880-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000157supercontigsc0000157:142695..148883 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.126725 0.0708942 0.082315 0 0 0 0 0 0.0612631 0.151769 0 0.048418 2.2106 0.81195 0.121517 0 0.0545758 0 6.07874 10.4267 0.0702908 0.308568 0.583497 0.757834 0.655811 1.07769 0 0 0 0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR008979Galactose-bd-like
IPR000421FA58C
IPR003609Pan_app
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00012880 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top