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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012878 ID=TCONS_00012878|Name=TCONS_00012878|organism=Clytia hemisphaerica|type=transcript|length=550bp
CAACAACTCAAGAAATGCATAACGAAACTAGAATTTCCAGCAGTAGGGTT
ATAAATTTTGATACGTAATGGCTAGTCTAAAAAGTAATATTGCATCTGCG
TTTGGAGTTTTCGCATTTTCTCAACTTTTGATTGCGATATGTTTTATAGT
GCTTTATGCACGCAACAAAAAGTATTTCGAAGTAGTATTCCATGAACTGG
ATTATCTCGTTATCGAAAATTGTGTTTTGttATTGATAAGTGGTGTGACG
AGCGCCATTACATGTTACCAAAATGAACGAGCTAGGACAATGtTCGGAGT
TTCGTTATATCTGATCATAGCTATTTTTGTGTCTAATATCTTTTTGGCAC
ACAAGCTGAGAGATTTTCACTCTACTACATGCTCAAGTAATACAGTGATG
GCTTTGAAAGAAGAGGGTGGACACAATAATGCTTGTCAAGTGTTCAAGCA
AAAAAGAAAGGAACTATTTTTCTGCGTTGTGGCAGCTTGCATCAATTCAT
TCTGCATAAAGATTTGTTCCCTTTTGGGAATTGCTGCTGTTAATTGTCAC Run BLAST on NCBI protein sequence of TCONS_00012878-protein >TCONS_00012878-protein ID=TCONS_00012878-protein|Name=TCONS_00012878-protein|organism=Clytia hemisphaerica|type=polypeptide|length=161bp
MASLKSNIASAFGVFAFSQLLIAICFIVLYARNKKYFEVVFHELDYLVIE
NCVLLLISGVTSAITCYQNERARTMFGVSLYLIIAIFVSNIFLAHKLRDF
HSTTCSSNTVMALKEEGGHNNACQVFKQKRKELFFCVVAACINSFCIKIC
SLLGIAAVNCH Run BLAST on NCBI transcript from alignment at sc0000157:107115..113923+ Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00012878 ID=TCONS_00012878|Name=TCONS_00012878|organism=Clytia hemisphaerica|type=transcript|length=6809bp|location=Sequence derived from alignment at sc0000157:107115..113923+ (Clytia hemisphaerica)
CAACAACTCAAGAAATGCATAACGAAACTAGAATTTCCAGCAGTAGGGTT
ATAAATTTTGATACGTAATGGCTAGTCTAAAAAGTAATATTGCATCTGCG
TTTGGAGTTTTCGCATTTTCTCAACTTTTGATTGCGATATGTTTTATAGT
GCTTTATGCACGCAACAAAAAGTATTTCGAAGTAGTATTCCATGAACTGG
ATTATCTCGTTATCGAAAATTGTGTTTTGGTAAGTCCACGgatacttaaa
ggttttgtttttaaataagagtggtatcgtttgcttactcatcaatttta
atttacaagctttttcacattgatttGACACGGATTTGGAGTAAGATGTG
ACAGTGCctgcctattgttatgttaagcaaaaagtgttttttgttttctc
tttttgaccaattttgctccacatccgtgtcagtTCAATGTAAAAAACTT
GCGAACGAAAATTGATGAAtagcaaacaatatcactctcttataaaaaag
caaaaccttttaatcaaattataaatttttctaATCATTCAATCCAAACC
ATATTAAGGTGAAAGCCAGAAATCTCAccattcattttttaatttttcca
gttATTGATAAGTGGTGTGACGAGCGCCATTACATGTTACCAAAATGAAC
GAGCTAGGACAATGGTAAGTCGttaaccccggggggggggcactcaaggt
aaatgacctaccagacgttcggcccttaagggtagctTTTTCATAACTCA
GCTAGTGagctgtaagggtaggaaattacaaaactgcactgaactgcatt
gtaagggtaggaaattgtgataaaaggctaattttttggtaaaattggca
caaaattggtcaattttggaggaaaaattccacattttcttggaaaattg
caaaagttttcacccttacgggcgagaaattttgagaaagtgcactgtaa
gggtatgatttttcatggaaattcactgcactgtaagggtccgattttag
aagccaaattttgggccgaacgtatggtcgttttcagatcgagtgccccc
cccccgggtcgtAAACCGCCACCCTtgcataactttcgatctaggAAAGC
TATGGACTTGGAAGTTGGCAGAAATGTTCTACCGGgaattcatagaaaaa
aatttgaattaatgacgtcatcacaaagttttaCAATTACCGCTGACCAG
TGAAAAAGCACTCTAAAATAGCatttaaagttgaacgaataaagattttt
caactctgttttgattttctgaaagccaaaaagaatacttttaacataat
tgccggtttttaacatactgatAAAATTGACATTTAAAATCTATGAAGAA
GATGAgtgagttttttttcaaaaaacaacgaCGTCATTTTTAATTgcgtc
atcaatttttgaattttttatttgatattagCTTAGATGTTTTATTGAAA
ACCATAGAAtcattctacaagaagttgattttcttcttcttcttcctttt
tcatcttcgcaaagatttattatacactggataaacgactcataaaacga
tggagagcgatcattgtattttcattgtttcagaaaacaattgatgttct
agctttgtccgNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNattgatgttctagctttgtccgcaaaggacaactgtcatggcgg
ctcgaagatgtctgatttttaaaaatgtttatcagtcttgtttttaaaaa
gttctctatctctttctttttgtacatttgcagaaaaaaagtttaaaagt
aaggctagcattccaagctggatacatttgtgaaatctaatgtgagaaaa
acatcaataGACAAGAAaatcagacaaaatgcttatagtgacacgaaatt
ttcaattggaaatatctttccaagactgtccccagaggagctgaaattaa
catacattcGACTTGAGTggcttggctccactgtggtatgaaaatccttt
ggaggcacgtggtggcaaggtggtttattttagcttgaagtttgaaaatt
tccggtgtcaacattaaattttttatacacaacacgtcttttgcatcttt
ctcacagcttgaaacgtcataacgacttataattagcaaaagtggaagaa
tctgactctcacaggaaagttttaagtctcttttgggaattggatgagtg
attttcgacaagaaatgcaataaaaatgcttcgaaaaatcatttaatgag
ggaaggagagtgaacaataatatcattactgcggacatagctagtacacg
agaaatcaacaaaaatctgttacttgtatatccagtgtataataaatcct
tgatcTTCGTATTtccatttttaaaaacttttttgataatattccactcc
ggattatctttttaacgaacACAAAATGTATCTAATTCTAATtctgtcaa
aagttacagccttttttgtctccaatGCAGTTAatttatattgagacaga
ctttatttATTATATCATAAATTTCAtccacaaatatctttttaatttca
gtTCGGAGTTTCGTTATATCtgatcattgctatttttgtGTCTAATATCT
TTTTGGCACACAAGCTGAGAGATTTTCACTCTACTACATGCTCAAGTAAT
ACAGGTGAGTTTTGCCCCGGGAAGGGGAGGGGGTACCTAGGAAAAATTGG
TTGCGGGtaatgtgcgagccataagggtcactttttcacatcCTCGAAAG
TCCCTCGAAGGGgtacaaattttaaaaagtaattgaaTCTCTGTAAGGTT
TTCAGAATTACCATAATCAATAAATTCTTGAaagtttttgctgaaatttt
gggaaaatagtCACTCTAAGGGTGGTAATGGGGcgatagagcatgttgca
ttacaccttctcgtgtccccaagccttgaGTAAGTGAGTTCAACTTGTGA
GGCGGTCATTCACGTGTTGTCTACGCATTTGTAcacagaaaaaaaagaga
aagtttTGCTATCCTACCATACATTTttaaatacagggtgtccggaaaaa
agtatCGATCACGAACATGATtttgagtagaaggttgttgcgtgtgttta
acaaaatgtaagaaaatatataccaaccaATTAATTGTTTTcacaacagt
cattatgattaaaaagaattaactttctttacaatttNGTTACAGAAATG
ATACTTAAtggccctgtcaatatttttgttaaatagTGTCacttgtcaag
aaaatgacaagTTATTTCAAATGTCactttttgcccccgcaggagcgtag
cgacgaggaggctctcatagtttcacgcatagatattggactggaatctc
aaaactttgcgaattgttttgttgttgtcgcgtaagcatatccgtagtta
gtctcttccgtaNaacgtatggtcgttttcagatcgagtgcccccccccg
ggtcgtTAACCCGCCACCGTtgcataactttcgatctaggAAAGCTATGG
ACTTGGAAGTTGGCAGAAATGTTCTACCAGgaattcatagaaaaaaattt
ggattaatgacgtcatcacaaaattttacaattaccgCTGACCAGTGAAA
AAGCACTCTAAAATAGCATTTACAGTTGAACGAATAAAGATTTTTCAAct
ctgttttgattttctgaaagccaaaaagaatacttttaacataattgccg
gtttttaGCATACTGATAAAATTGACATTTAAAATAGGTATATGAAAAAG
ATGAgtgagtttttttcaaaaaacaacgaCGTCATTTTTAATTgcgtcat
caatttttgaatttttttatttgatattagCTTAgatgttttattgaaaa
tcatagaatcattctacaagaagttgattttcttcttcttcttccttttt
catcttcgtatttccatttttaaaatcttttttgataatattccactccg
gattatctttttaacgaacACAAAATGTATCTAATtctaattctatcaaa
agttacagcgtTTTTTGTCTCCAATGCAGTTAatttatattgagacagac
tttatttattatgtcataaatttcatccacaaatatctttttaatttcag
tTCGGAGTTTCGTTATATCTGATCATAGCTATTTTTGTGTCTAATATCTT
TTTGGCACACAAGCTGAGAGATTTTCACTCTACTACATGCTCAAGTAATA
CAGGTGAGTTTTGCCCTGGGAAGGGGAGGGGGTACCTAGGAAAAATTGGT
TGCGGGtaatgtgcgagccataagggtcactttttcacatcCTCGAAAGT
CCCTCGAAGGGGtacaaattttaaaaagcaattgaATCTCTGTAAGGGTT
TCAGAATTACCATAATcaataaattcttgaaaatttttgctgaaattttg
ggaaaatagtCACTCTAAGGGTGGTAATGGggggatagagcatgttgcat
tacaccaacgcgaaaaaaacttctcgtacCCCCAAGCCTTGAGTAAGTGA
GTTCAACTTGTGAGGCGGTTATTCACGTGTTGTCTACGCATTTGTAcaca
gaaaaaaaagagaaagtttTGCTATCCTACCATACATTTttaaatacagg
gtgtccggaaaaaagtatcgagcACGAACATGATtttgagtagaaggttg
ttgcgtgtgtttaacaaaatgtaagaaaatatataccaacaaaTTAATTG
TTTTcacaacagtcattatgattaaaaagaaataactttctttacaattt
tcatgacgttaaagttattgagaattgttttacCTCATAAAAGATGTCTT
ATGACAATTAatagggagtttctaaacatcgacaagaaatggcgaccacg
aacGGCGACCGCAACGAGCGACCAGAAAAACTTGGGTTACTGAGTTTTTT
CCCTTTCTCCAACGTAGAGCGTCTCTCCTGAATATATCATATTGAAAAGT
AacctcacccctgtctcatctatTTAGAGCCACGTGCCCAATGCCtaaaa
caaccatttcgacgctcttggagcttgattatggtgtcaatttctatccN
TCCGGGACgatagtatacatattttcatattacgttatatggtattatca
ttattaaatattacaattttagttttgatttagctttgaaaagctgaagc
gagtgttataaatgcaaatcaaaacagtgtatgatataacacgaattaca
atattacttgtgcaaatcaaaacaaacaaaatggcagactggttatgatg
atgatgggCTGACTTCATTGACtagaaaaagtattttgtatgtcaaattt
tgcttcttgtctttgaaactgaatactaactactgtaatttagtcagaag
ttcacttcagcaatgatttcaattctttttccagaatcttNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNaaatgtacatttgatatttttgttcaaactctaa
tttatttttgtctgtcattttattgataactacctttattgtttataggg
cttcttgagctttaaatactatcatatggtcgtaactcgagaaagtcctt
cttaacttaatAAAACAAcgggcaaagtacaaaaaagatgaatgtacgca
tatgtaaagttgaatccaaacgtggttgactttttcttttggccttccaa
ataatttacctcacttagagtgtttttacgtcttttcagtgtggtaaatc
tttttcaaaaacctgaaaaaagtttgtttactcgttaaactttacatgcg
cacgttaaactttttcatgcagttgtgatagcctaaataacttaagctcc
agtggtttggtgaaatagctccaaattctggctttctaagttaggagaga
ccttcccgaaggcatttaacggtggttagactaggtacacagacagtCAT
ACAGAAACATcataaagggaaagtatatcgctagctataaactcaaaaag
tctagcttcctgaaggcacgtctcttcattgtctgcgctgtgatcagctt
ggagaaaagattgcatcatggaaaaggactatgcacttgaaaagaaatct
agaaaaggtctatttagtgaatagtaatcatgacatatatcgttataaga
aagaaactaggaaaaaaacaaacaaacaggagatgtgaaaatcagtaaga
taatgattccataactttttaaatatatttttgagaggctttccagcttt
tccttaaattttattaagttatcaagctgcatgaattcttcaagtatgta
tttttttataatggaatataatttttttttcaagcaaacNNNNNNNNNNN
NNNNNNNNNNNNNNNNNCAAATTTATCTGTTCGCCGGTCGTGGTTGCtgg
tcgtggtcgtcatttctggtcgatgtttagaaattcccaaattaatatga
cacagaaAGAAACTGATAAAaatgcaaatttagtgaaacacacacaagaa
ctttctttctatatatgtagtttccggacaccctgtataccTTCCCTTTA
ATAGTGATGGCTTTGAAAGAAGAGGGTGGACACAATAATGCTTGTCAAGT
GTTCAAGCAAAAAAGAAAGGAACTATTTTTCTGCGTTGTGGCAGCTTGCA
TCAATTCATTCTGCATAAAGATTTGTTCCCTTTTGGGAATTGCTGCTGTT
AATTGTCAC Coding sequence (CDS) from alignment at sc0000157:107115..113923+ >TCONS_00012878 ID=TCONS_00012878|Name=TCONS_00012878|organism=Clytia hemisphaerica|type=CDS|length=1932bp|location=Sequence derived from alignment at sc0000157:107115..113923+ (Clytia hemisphaerica)
ATGGCTAGTCTAAAAAGTAATATTGCATCTGCGTTTGGAGTTTTCGCATT
TTCTCAACTTTTGATTGCGATATGTTTTATAGTGCTTTATGCACGCAACA
AAAAGTATTTCGAAGTAGTATTCCATGAACTGGATTATCTCGTTATCGAA
AATTGTGTTTTGttATTGATAAGTGGTGTGACGAGCGCCATTACATGTTA
CCAAAATGAACGAGCTAGGACAATGtTCGGAGTTTCGTTATATCTGATCA
TAGCTATTTTTGTGTCTAATATCTTTTTGGCACACAAGCTGAGAGATTTT
CACTCTACTACATGCTCAAGTAATACAGTGATGGCTTTGAAAGAAGAGGG
TGGACACAATAATGCTTGTCAAGTGTTCAAGCAAAAAAGAAAGGAACTAT
TTTTCTGCGTTGTGGCAGCTTGCATCAATTCATTCTGCATAAAGATTTGT
TCCCTTTTGGGAATTGCTGCTGTTAATTGTCACATGGCTAGTCTAAAAAG
TAATATTGCATCTGCGTTTGGAGTTTTCGCATTTTCTCAACTTTTGATTG
CGATATGTTTTATAGTGCTTTATGCACGCAACAAAAAGTATTTCGAAGTA
GTATTCCATGAACTGGATTATCTCGTTATCGAAAATTGTGTTTTGttATT
GATAAGTGGTGTGACGAGCGCCATTACATGTTACCAAAATGAACGAGCTA
GGACAATGtTCGGAGTTTCGTTATATCTGATCATAGCTATTTTTGTGTCT
AATATCTTTTTGGCACACAAGCTGAGAGATTTTCACTCTACTACATGCTC
AAGTAATACAGTGATGGCTTTGAAAGAAGAGGGTGGACACAATAATGCTT
GTCAAGTGTTCAAGCAAAAAAGAAAGGAACTATTTTTCTGCGTTGTGGCA
GCTTGCATCAATTCATTCTGCATAAAGATTTGTTCCCTTTTGGGAATTGC
TGCTGTTAATTGTCACATGGCTAGTCTAAAAAGTAATATTGCATCTGCGT
TTGGAGTTTTCGCATTTTCTCAACTTTTGATTGCGATATGTTTTATAGTG
CTTTATGCACGCAACAAAAAGTATTTCGAAGTAGTATTCCATGAACTGGA
TTATCTCGTTATCGAAAATTGTGTTTTGttATTGATAAGTGGTGTGACGA
GCGCCATTACATGTTACCAAAATGAACGAGCTAGGACAATGtTCGGAGTT
TCGTTATATCTGATCATAGCTATTTTTGTGTCTAATATCTTTTTGGCACA
CAAGCTGAGAGATTTTCACTCTACTACATGCTCAAGTAATACAGTGATGG
CTTTGAAAGAAGAGGGTGGACACAATAATGCTTGTCAAGTGTTCAAGCAA
AAAAGAAAGGAACTATTTTTCTGCGTTGTGGCAGCTTGCATCAATTCATT
CTGCATAAAGATTTGTTCCCTTTTGGGAATTGCTGCTGTTAATTGTCACA
TGGCTAGTCTAAAAAGTAATATTGCATCTGCGTTTGGAGTTTTCGCATTT
TCTCAACTTTTGATTGCGATATGTTTTATAGTGCTTTATGCACGCAACAA
AAAGTATTTCGAAGTAGTATTCCATGAACTGGATTATCTCGTTATCGAAA
ATTGTGTTTTGttATTGATAAGTGGTGTGACGAGCGCCATTACATGTTAC
CAAAATGAACGAGCTAGGACAATGtTCGGAGTTTCGTTATATCTGATCAT
AGCTATTTTTGTGTCTAATATCTTTTTGGCACACAAGCTGAGAGATTTTC
ACTCTACTACATGCTCAAGTAATACAGTGATGGCTTTGAAAGAAGAGGGT
GGACACAATAATGCTTGTCAAGTGTTCAAGCAAAAAAGAAAGGAACTATT
TTTCTGCGTTGTGGCAGCTTGCATCAATTCATTCTGCATAAAGATTTGTT
CCCTTTTGGGAATTGCTGCTGTTAATTGTCAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00012878-exon-sc0000157-1491911889:107115..107343 | TCONS_00012878-exon-sc0000157-1491911889:107115..107343 | Clytia hemisphaerica | exon |
| TCONS_00012878-exon-sc0000157-1510915933:107115..107343 | TCONS_00012878-exon-sc0000157-1510915933:107115..107343 | Clytia hemisphaerica | exon |
| TCONS_00012878-exon-sc0000157-1575043694:107115..107343 | TCONS_00012878-exon-sc0000157-1575043694:107115..107343 | Clytia hemisphaerica | exon |
| TCONS_00012878-exon-sc0000157-1491911889:107716..107778 | TCONS_00012878-exon-sc0000157-1491911889:107716..107778 | Clytia hemisphaerica | exon |
| TCONS_00012878-exon-sc0000157-1510915933:107716..107778 | TCONS_00012878-exon-sc0000157-1510915933:107716..107778 | Clytia hemisphaerica | exon |
| TCONS_00012878-exon-sc0000157-1575043694:107716..107778 | TCONS_00012878-exon-sc0000157-1575043694:107716..107778 | Clytia hemisphaerica | exon |
| TCONS_00012878-exon-sc0000157-1491911889:111215..111317 | TCONS_00012878-exon-sc0000157-1491911889:111215..111317 | Clytia hemisphaerica | exon |
| TCONS_00012878-exon-sc0000157-1510915933:111215..111317 | TCONS_00012878-exon-sc0000157-1510915933:111215..111317 | Clytia hemisphaerica | exon |
| TCONS_00012878-exon-sc0000157-1575043694:111215..111317 | TCONS_00012878-exon-sc0000157-1575043694:111215..111317 | Clytia hemisphaerica | exon |
| TCONS_00012878-exon-sc0000157-1491911889:113769..113923 | TCONS_00012878-exon-sc0000157-1491911889:113769..113923 | Clytia hemisphaerica | exon |
| TCONS_00012878-exon-sc0000157-1510915933:113769..113923 | TCONS_00012878-exon-sc0000157-1510915933:113769..113923 | Clytia hemisphaerica | exon |
| TCONS_00012878-exon-sc0000157-1575043694:113769..113923 | TCONS_00012878-exon-sc0000157-1575043694:113769..113923 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000157 | supercontig | sc0000157:107115..113923 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR013833 | Cyt_c_oxidase_su3_a-hlx |
| IPR000298 | Cyt_c_oxidase-like_su3 |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016020 | membrane |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0022904 | respiratory electron transport chain |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004129 | cytochrome-c oxidase activity |
| GO:0015002 | heme-copper terminal oxidase activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0022904 |
respiratory electron transport chain |
| cellular_component |
GO:0016020 |
membrane |
| molecular_function |
GO:0004129 |
cytochrome-c oxidase activity |
| molecular_function |
GO:0015002 |
heme-copper terminal oxidase activity |
Blast
The following BLAST results are available for this feature:
|
