MSTRG.1335.1.p1 (mRNA) -

Overview
NameMSTRG.1335.1.p1
Unique NameMSTRG.1335.1.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000006_pilon:1966253..1970039+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.1335.1.p1 ID=MSTRG.1335.1.p1|Name=MSTRG.1335.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=3787bp|location=Sequence derived from alignment at sc0000006_pilon:1966253..1970039+ (Clytia hemisphaerica_ch_hm2_pilon)
caaaaagatttttaagaaacGAAACTGCCACATCCATGAATAAAAATACA
GGGATGTAAATCAAAAGATCACACGGCAGCAGGATTATAACAACTAGAAG
GAGAACATAAGGAAGGTCATAGGTTTAGTATCAGTTACAGAAACATCCCA
ATAACAAACAAATGTACAGACTTTtgcaaaacaataacaatatgGAGGGA
GACGAAGCCGTCCGTATTGACCAATCAAATGCCACCGCTAATGAGGCTGA
AGGAGCGGAGAGTTCTTCTAATTCCGCTTTAGATGCGTTCGAAAAGAAAT
ATGCTCACATGGAAACACAGTATGCTAGAGCTCAAGAGGTTTGTATTTAA
CGAAACGGGGTACAAAAGGATACTATCTTTTAGCAGTCACACTTGACTAT
ATAACTTGCGTCTATTGTattgagatgccttggagtttttacaagatgct
taactaataggttatttttaaacaatagggatgacgcgttctttagaaaa
agtaataaaatcgtttgtctcaacatttaacgaccaacagagtcatcaaa
gaacttgtaaaaactccagcttgacccattGTATTTACTGAATTTGTTAA
CTGCAACTTTTAATTTTATGCCAACAGTATTCTCGCTAAGTATAGCGTAT
TATGTAACAAAATATTCTACGTAGTAGTTACTGTGTATTGTATACGTGTG
AGCAGTTATGGCACCTTTTTGGTGTATAACTAAGGGTTACAGTCCCGTAA
AGGATTATACATCAGTAAAAGTTTCATATCGCTGTagcggattttttttt
tcgtttacgGACGAAATCCTATGTCAGCGGGCGAAGACCTTTAAAACCTT
AACGCAGCGATTTCCAGCGAACGAAGacatttgaaaatgtaaatgtGACT
CTAGCAGGCAAATATGTTAGCCGTTTGGAAATCAAACTATGATGTTGGAG
ATTTTAGTACTAACATCACCTTGTTGGGCTACTATTTAATTGATGAGCGT
TTATTTTATAATCTAGCAACTAGCATATTACAAGAAAGAGAATAAGGCAC
AAGTGCTTTTGAAACGAGAAACGAAGAAAGAATTACAGGAGGCTCTCCGA
CAAAAAGATGTGCAAATCAAAGAGAAGGAACGAAAATTGCAAGAATTACA
CTTGTTCTTGGAAAGACACGAGAAGAAAGTAAAGGTATGTAAAGAAATTG
TACATGAATTAACGCATCGAaacacccctatctcacagccccggtgaaac
tttttcccacgGCGGGGAAAAAATTTCTATCGGAATGCCGAAGGTGATAG
GAATTATATAGTcccaaactaaaaaaaatccaTTGGGAATGGTTTTGGTT
GGAGTgcatatttttacaattaatttcaaattggGATAGTTGAAAGTCGA
TTTCCTAGTGGGGCTTAAGTTGTAGGCATTTTTTCCACATGGAATGAAAC
CGATGGGCGGGGGTTCCACCGGGTCGGTGACACAGGAGTGTATCAAAACA
CTAGCGTATGACTCACTTCTAGCCAAGCAACCTATGCGCCGTGACCCATC
CATTTCCGTATAGGTAACCAAGGTTTTCGTAGATGGCAGTTAACTTTGGC
CAACCAATACCATGGGAATCGGGCCACTCAGACTAAGGATGCTGTCGGAT
AATTTAATATGTTATAACACAGTTGAAAGAATGGGATTGATAGCCTACTG
CTAACTAAACCAAATCAATGGATATGTATATGAGATTCCAACCACAGGTT
GTTGATGTGAATTCCGAGCCAAAATTCCGGCGTTCAGAACGGCCTTATAG
TTTCAGTATTTGGTTAGTATGTttaattgatatttttgaaatatgatgcC
AATGACACCAAAATAATAAACTCTGATTTGGTTTGAATTCTCCTTTAGAA
ATACATCAACAAAAAGAAGATAGAGGTGTCCACACTCAATAACGAAATTA
AAGAAAAGGACCAAACCATCAATATACAGGTAAATAAGACATTTTCTTTA
CGGCTTTCAGTGCTAACTTCAAAGactgaaaaaaatgacaaattttggag
CTAACTTGagcattaaaatgtttttgagatgAAGATATGACATATAAACA
CTAGCcttttaaatactctacaataAAATATGGTTGTGTCTTGCCAGAGC
AATGAAGTTACCTGGTGAGGTTATCTAGATTCTTAAAAGATCCAGGCTTA
CAATTGATaattgcatactttttgattttataggCTATCGAGATTAACAT
TAAATCAGAAGATATCGAGAAAGCCAACGAAAAGATTCACGCTTTTCAAC
AACAAATCGATGGCAAAGACTGTAATCTGGTGAGGATCTGTTCTGACTTT
GATTCGAGTAAATCTGACTCTAACCGAATTCCATCTTTATTACaggattt
tttctaaaattcgaaataaTTCATGGTCCAAATCAGTGGGAAACCCTCTT
CATAATACTTTTTATCATTATAAGTTCCTTGTAATTCGCACACATTAAAA
ACTCGAGTCAACGATGTTTTAAGCTTCTGGACTGTCTTAGTAAAGAAATT
TTACTAAACTTACACTAAATAGGTGACTTATGCTTGTTCATTTTGTGCCA
TAACTCTCAATGATATATTTGAATTCACGTAAATAGTTTCTTTATATACT
TATAAGCATTTCATTTCTTAGGTTGAGCTCGAAGAAGAGACGactaaaca
aaaagagaaaatttcagAACTGGAAGAAAATGTTCGACAGCTTGAATTCG
AAAAGGTAAAACTTTAGTAGGTCAATCTATTCCATGGTTAAGTAGCTAAG
GATTCGAGAATACCAAAAAGAAGATAGATGAGGCCTTGAAAATGGGACTT
GTACATCAAAGTCAATAATTCTCCATTTTTCTCTCCAAGCCACTAAATCA
TGATCCAAATTAATAAACAACAtcaagattttgattttaataaacAAAGC
TTTTCGAATCTTCACTAGCTCATCatcaggttgaaaaaaaaagattctcc
GGCTTGTCGTTTTATCTTAGGTAATTTAAAACTGCAGTGAGAAAAAGCCA
GTTTTCCTATAGTTGTTGAACCAACTTGCATAAACCAATACTTCCTATAA
AGTGCATTTCTGAGGACATCGAAATCCGGTTCCAGTCCTTATTCGAACAG
AAGGGGACTTGGTAGAATGTATTCTCGTTAATTATCATTCTATATTCATT
CACGCTTTACAATTACAGTATACCTTGTGTCTAAAAACAGTTTCAAAACT
TACAATACACGGGTTGAAAAATTATATcggtgcagtcaaaacatgtgatt
actcgaaaaagttcacgtggttttattcccatgttacttgatgctttaca
acttacagctgataacgtCTTTAtaagtgtcaataaattcgaaccaatta
GAAATAAAAGTCATGCAACAAGCActtaaaaatttcgagtaaaaaaGTGA
TTTGTCcttagactttaattttgcaacctgtgtattttGATACTGTTAAA
TGCCGTGTTTCAGttgtaaaaatttctttaatgtaGGTCACCCTTGAGAA
CGATCTCAAGACTTTTGAGAACTCAAAGAAATCGAAACGTCGAGTGCGAT
GGTATCAATGCGTCATGTTCCCACGACGCCGGCAACGACAACGAAACACC
AGTGACGAGGGCAGCAGTAGTCAACATTGATAAAATACCGTGATGTATTT
TATGAACAAAATACTTagaatttaaaatgtttttaacaatCCCACTCTAA
TATATGAAATACATTGAACCCATGAACTTAAActaca

Coding sequence (CDS) from alignment at sc0000006_pilon:1966253..1970039+

>MSTRG.1335.1.p1 ID=MSTRG.1335.1.p1|Name=MSTRG.1335.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=4500bp|location=Sequence derived from alignment at sc0000006_pilon:1966253..1970039+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGTACAGACTTTtgcaaaacaataacaatatgGAGGGAGACGAAGCCGT
CCGTATTGACCAATCAAATGCCACCGCTAATGAGGCTGAAGGAGCGGAGA
GTTCTTCTAATTCCGCTTTAGATGCGTTCGAAAAGAAATATGCTCACATG
GAAACACAGTATGCTAGAGCTCAAGAGCAACTAGCATATTACAAGAAAGA
GAATAAGGCACAAGTGCTTTTGAAACGAGAAACGAAGAAAGAATTACAGG
AGGCTCTCCGACAAAAAGATGTGCAAATCAAAGAGAAGGAACGAAAATTG
CAAGAATTACACTTGTTCTTGGAAAGACACGAGAAGAAAGTAAAGAAATA
CATCAACAAAAAGAAGATAGAGGTGTCCACACTCAATAACGAAATTAAAG
AAAAGGACCAAACCATCAATATACAGgCTATCGAGATTAACATTAAATCA
GAAGATATCGAGAAAGCCAACGAAAAGATTCACGCTTTTCAACAACAAAT
CGATGGCAAAGACTGTAATCTGGTTGAGCTCGAAGAAGAGACGactaaac
aaaaagagaaaatttcagAACTGGAAGAAAATGTTCGACAGCTTGAATTC
GAAAAGGTCACCCTTGAGAACGATCTCAAGACTTTTGAGAACTCAAAGAA
ATCGAAACGTCGAGTGCGATGGTATCAATGCGTCATGTTCCCACGACGCC
GGCAACGACAACGAAACACCAGTGACGAGGGCAGCAGTAGTCAACATTGA
ATGTACAGACTTTtgcaaaacaataacaatatgGAGGGAGACGAAGCCGT
CCGTATTGACCAATCAAATGCCACCGCTAATGAGGCTGAAGGAGCGGAGA
GTTCTTCTAATTCCGCTTTAGATGCGTTCGAAAAGAAATATGCTCACATG
GAAACACAGTATGCTAGAGCTCAAGAGCAACTAGCATATTACAAGAAAGA
GAATAAGGCACAAGTGCTTTTGAAACGAGAAACGAAGAAAGAATTACAGG
AGGCTCTCCGACAAAAAGATGTGCAAATCAAAGAGAAGGAACGAAAATTG
CAAGAATTACACTTGTTCTTGGAAAGACACGAGAAGAAAGTAAAGAAATA
CATCAACAAAAAGAAGATAGAGGTGTCCACACTCAATAACGAAATTAAAG
AAAAGGACCAAACCATCAATATACAGgCTATCGAGATTAACATTAAATCA
GAAGATATCGAGAAAGCCAACGAAAAGATTCACGCTTTTCAACAACAAAT
CGATGGCAAAGACTGTAATCTGGTTGAGCTCGAAGAAGAGACGactaaac
aaaaagagaaaatttcagAACTGGAAGAAAATGTTCGACAGCTTGAATTC
GAAAAGGTCACCCTTGAGAACGATCTCAAGACTTTTGAGAACTCAAAGAA
ATCGAAACGTCGAGTGCGATGGTATCAATGCGTCATGTTCCCACGACGCC
GGCAACGACAACGAAACACCAGTGACGAGGGCAGCAGTAGTCAACATTGA
ATGTACAGACTTTtgcaaaacaataacaatatgGAGGGAGACGAAGCCGT
CCGTATTGACCAATCAAATGCCACCGCTAATGAGGCTGAAGGAGCGGAGA
GTTCTTCTAATTCCGCTTTAGATGCGTTCGAAAAGAAATATGCTCACATG
GAAACACAGTATGCTAGAGCTCAAGAGCAACTAGCATATTACAAGAAAGA
GAATAAGGCACAAGTGCTTTTGAAACGAGAAACGAAGAAAGAATTACAGG
AGGCTCTCCGACAAAAAGATGTGCAAATCAAAGAGAAGGAACGAAAATTG
CAAGAATTACACTTGTTCTTGGAAAGACACGAGAAGAAAGTAAAGAAATA
CATCAACAAAAAGAAGATAGAGGTGTCCACACTCAATAACGAAATTAAAG
AAAAGGACCAAACCATCAATATACAGgCTATCGAGATTAACATTAAATCA
GAAGATATCGAGAAAGCCAACGAAAAGATTCACGCTTTTCAACAACAAAT
CGATGGCAAAGACTGTAATCTGGTTGAGCTCGAAGAAGAGACGactaaac
aaaaagagaaaatttcagAACTGGAAGAAAATGTTCGACAGCTTGAATTC
GAAAAGGTCACCCTTGAGAACGATCTCAAGACTTTTGAGAACTCAAAGAA
ATCGAAACGTCGAGTGCGATGGTATCAATGCGTCATGTTCCCACGACGCC
GGCAACGACAACGAAACACCAGTGACGAGGGCAGCAGTAGTCAACATTGA
ATGTACAGACTTTtgcaaaacaataacaatatgGAGGGAGACGAAGCCGT
CCGTATTGACCAATCAAATGCCACCGCTAATGAGGCTGAAGGAGCGGAGA
GTTCTTCTAATTCCGCTTTAGATGCGTTCGAAAAGAAATATGCTCACATG
GAAACACAGTATGCTAGAGCTCAAGAGCAACTAGCATATTACAAGAAAGA
GAATAAGGCACAAGTGCTTTTGAAACGAGAAACGAAGAAAGAATTACAGG
AGGCTCTCCGACAAAAAGATGTGCAAATCAAAGAGAAGGAACGAAAATTG
CAAGAATTACACTTGTTCTTGGAAAGACACGAGAAGAAAGTAAAGAAATA
CATCAACAAAAAGAAGATAGAGGTGTCCACACTCAATAACGAAATTAAAG
AAAAGGACCAAACCATCAATATACAGgCTATCGAGATTAACATTAAATCA
GAAGATATCGAGAAAGCCAACGAAAAGATTCACGCTTTTCAACAACAAAT
CGATGGCAAAGACTGTAATCTGGTTGAGCTCGAAGAAGAGACGactaaac
aaaaagagaaaatttcagAACTGGAAGAAAATGTTCGACAGCTTGAATTC
GAAAAGGTCACCCTTGAGAACGATCTCAAGACTTTTGAGAACTCAAAGAA
ATCGAAACGTCGAGTGCGATGGTATCAATGCGTCATGTTCCCACGACGCC
GGCAACGACAACGAAACACCAGTGACGAGGGCAGCAGTAGTCAACATTGA
ATGTACAGACTTTtgcaaaacaataacaatatgGAGGGAGACGAAGCCGT
CCGTATTGACCAATCAAATGCCACCGCTAATGAGGCTGAAGGAGCGGAGA
GTTCTTCTAATTCCGCTTTAGATGCGTTCGAAAAGAAATATGCTCACATG
GAAACACAGTATGCTAGAGCTCAAGAGCAACTAGCATATTACAAGAAAGA
GAATAAGGCACAAGTGCTTTTGAAACGAGAAACGAAGAAAGAATTACAGG
AGGCTCTCCGACAAAAAGATGTGCAAATCAAAGAGAAGGAACGAAAATTG
CAAGAATTACACTTGTTCTTGGAAAGACACGAGAAGAAAGTAAAGAAATA
CATCAACAAAAAGAAGATAGAGGTGTCCACACTCAATAACGAAATTAAAG
AAAAGGACCAAACCATCAATATACAGgCTATCGAGATTAACATTAAATCA
GAAGATATCGAGAAAGCCAACGAAAAGATTCACGCTTTTCAACAACAAAT
CGATGGCAAAGACTGTAATCTGGTTGAGCTCGAAGAAGAGACGactaaac
aaaaagagaaaatttcagAACTGGAAGAAAATGTTCGACAGCTTGAATTC
GAAAAGGTCACCCTTGAGAACGATCTCAAGACTTTTGAGAACTCAAAGAA
ATCGAAACGTCGAGTGCGATGGTATCAATGCGTCATGTTCCCACGACGCC
GGCAACGACAACGAAACACCAGTGACGAGGGCAGCAGTAGTCAACATTGA
ATGTACAGACTTTtgcaaaacaataacaatatgGAGGGAGACGAAGCCGT
CCGTATTGACCAATCAAATGCCACCGCTAATGAGGCTGAAGGAGCGGAGA
GTTCTTCTAATTCCGCTTTAGATGCGTTCGAAAAGAAATATGCTCACATG
GAAACACAGTATGCTAGAGCTCAAGAGCAACTAGCATATTACAAGAAAGA
GAATAAGGCACAAGTGCTTTTGAAACGAGAAACGAAGAAAGAATTACAGG
AGGCTCTCCGACAAAAAGATGTGCAAATCAAAGAGAAGGAACGAAAATTG
CAAGAATTACACTTGTTCTTGGAAAGACACGAGAAGAAAGTAAAGAAATA
CATCAACAAAAAGAAGATAGAGGTGTCCACACTCAATAACGAAATTAAAG
AAAAGGACCAAACCATCAATATACAGgCTATCGAGATTAACATTAAATCA
GAAGATATCGAGAAAGCCAACGAAAAGATTCACGCTTTTCAACAACAAAT
CGATGGCAAAGACTGTAATCTGGTTGAGCTCGAAGAAGAGACGactaaac
aaaaagagaaaatttcagAACTGGAAGAAAATGTTCGACAGCTTGAATTC
GAAAAGGTCACCCTTGAGAACGATCTCAAGACTTTTGAGAACTCAAAGAA
ATCGAAACGTCGAGTGCGATGGTATCAATGCGTCATGTTCCCACGACGCC
GGCAACGACAACGAAACACCAGTGACGAGGGCAGCAGTAGTCAACATTGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.1335MSTRG.1335Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.1335.1.p1MSTRG.1335.1.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.1335.1.p1.exon1MSTRG.1335.1.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.1335.1.p1.exon2MSTRG.1335.1.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.1335.1.p1.exon3MSTRG.1335.1.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.1335.1.p1.exon4MSTRG.1335.1.p1.exon4Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.1335.1.p1.exon5MSTRG.1335.1.p1.exon5Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.1335.1.p1.exon6MSTRG.1335.1.p1.exon6Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000006_pilongenomesc0000006_pilon:1966253..1970039 +