TCONS_00012455 (transcript) - C. hemisphaerica

Overview
NameTCONS_00012455
Unique NameTCONS_00012455
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length570

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00012455 ID=TCONS_00012455|Name=TCONS_00012455|organism=Clytia hemisphaerica|type=transcript|length=570bp
CCCCCAATGGTCACGTGTAACTACCAGGTGTCATTGGATTGTACAATGTA
ATGACTTCTTTCTAAATAAAGATCACAAATAACGGAACCGTTTCATTTCT
GGACTGGTCACGAGCAAAAAACCACGCTTTTTAGCCGTCCTCTGTAAAAA
ATGGAGTGGGACAGTCCTgtcaaaaagagaagaaagaaaaacataacGAA
GAAGAAAGCAGAAATATGCGTTGTTGGCTGCCGCAACGTTAAAGAACCTT
TGACTTGTTTTTCATCTAAATCATGGGagACGGTGTTAAATGCGGCGGTA
TCTCGAAATGATGATGGTTTGATTGCCAAGTACACCAACAAGAATGAAAA
ATAAGGGTACCATAGAACTTGCTACCAATCGTACACGAATCCTAAGGACC
TAAAAAGATGCTTAAAGAATTCGAAAGAATTACTTGATAGTCATTATCAA
GTCTCCAGTCCTACCAAACCTAATTTAACTACCACCATCGACACCAACAC
ATCGTGCAtcttttgtaacaaaagaaaaacatcgcAAAATGGCACAGGAT
ATGAAATACTTTTCCAGTGT
Run BLAST on NCBI

transcript from alignment at sc0000144:366803..367925-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00012455 ID=TCONS_00012455|Name=TCONS_00012455|organism=Clytia hemisphaerica|type=transcript|length=1123bp|location=Sequence derived from alignment at sc0000144:366803..367925- (Clytia hemisphaerica)
CCCCCAATGGTCACGTGTAACTACCAGGTGTCATTGGATTGTACAATGTA
ATGACTTCTTTCTAAATAAAGATCACAAATAACGGAACCGTTTCATTTCT
GGACTGGTCACGAGCAAAAAACCACGCTTTTTAGCCGTCCTCTGTAAAAA
ATGGAGTGGGACAGTCCTGTCAAAAAGAGAAGAAAGAAAAACATAACGAA
GAAGAAAGCAGAAATATGCGTTGTTGGCTGCCGCAACGTTAAAGAACCTT
TGACTTGTTTTTCATCTAAATCATGGGAGGTAAAAAGATTTTTCTAGCTT
TTCTCTCTAATGAATGAGTTCCATTTCTGAGACGAATTCGTATTTTTGAC
GTGGTTTCAGATGGCAGATGGTCAAACATGAAATAAAACTAGACAACAAG
GTTTTAGCTGAAAAGTCAACTTGCTTTTAACTAATAATGGATTTGACTAC
TGTTTTTATTTTGATTGCCGTTTTTATTTTGATTGTCGGTTTTGACAAAC
GTAGTCACGTGATGTATACTGAATCTAATTTAGACGGTGTTAAATGCGGC
GGTATCTCGAAATGATGATGGTTTGATTGCCAAGTACACCAACAAGAATG
AAAAATAAGGGTACCATAGAACTTGCTACCAATCGTACACGAATCCTAAG
GACCTAAAAAGATGCTTAAAGAATTCGAAAGAATTACTTGATAGTCATTA
TCAAGTCTCCAGTCCTACCAAACCTAATTTAAGTAAGTTGAACCTTGATC
ATATGAATATGCTTTTCATTTTTTGTTCGCAGAAGTCAACTATATGGGGA
TGGGCCTGGCAAACTCGATTGAGACAGGTTTATCAATAGCTTGATAGATA
CTCACTTTTTGAGAACAGTGGGCTTTAACACTAGTCAGTGTTTTTGAAAT
TTAGTCTCACTAAACGCGTGCGATAAACATTAGTAGCATGTGACGAGTGT
TAAACACCACTTTTTTCAAAAAGTAAACACGATGCTAAAATATTTAGAAC
TAGTTTTGATTGTTTCCAAACTTTAATATAGCTACCACCATCGACACCAA
CACATCGTGCATCTTTTGTAACAAAAGAAAAACATCGCAAAATGGCACAG
GATATGAAATACTTTTCCAGTGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006994XLOC_006994Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012455-exon-sc0000144-1575043694:367647..367925TCONS_00012455-exon-sc0000144-1575043694:367647..367925Clytia hemisphaericaexon
TCONS_00012455-exon-sc0000144-1575043694:367194..367392TCONS_00012455-exon-sc0000144-1575043694:367194..367392Clytia hemisphaericaexon
TCONS_00012455-exon-sc0000144-1575043694:366803..366894TCONS_00012455-exon-sc0000144-1575043694:366803..366894Clytia hemisphaericaexon
TCONS_00012455-exon-sc0000144-1510915933:367647..367925TCONS_00012455-exon-sc0000144-1510915933:367647..367925Clytia hemisphaericaexon
TCONS_00012455-exon-sc0000144-1510915933:367194..367392TCONS_00012455-exon-sc0000144-1510915933:367194..367392Clytia hemisphaericaexon
TCONS_00012455-exon-sc0000144-1510915933:366803..366894TCONS_00012455-exon-sc0000144-1510915933:366803..366894Clytia hemisphaericaexon
TCONS_00012455-exon-sc0000144-1491911889:367647..367925TCONS_00012455-exon-sc0000144-1491911889:367647..367925Clytia hemisphaericaexon
TCONS_00012455-exon-sc0000144-1491911889:367194..367392TCONS_00012455-exon-sc0000144-1491911889:367194..367392Clytia hemisphaericaexon
TCONS_00012455-exon-sc0000144-1491911889:366803..366894TCONS_00012455-exon-sc0000144-1491911889:366803..366894Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000144supercontigsc0000144:366803..367925 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0982763	0	0.222547	0	0.132531	0.209456	0.35319	0.236574	0	0.307741	0	0.0654515	0.0653605	0.27151	0	0.119774	0	0.151235	0	0	0	0.278082	0	0	13.6512	10.4781	0	0	0	0.111134
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00012455 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top