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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012034 ID=TCONS_00012034|Name=TCONS_00012034|organism=Clytia hemisphaerica|type=transcript|length=1727bp
AGTCTTGAAGATGGGGTCGAAATACACCGAATCTTATTTTACCATGGTTG
TCCAAAAAGTTGATTCCGTACTTAGCACTTTCCATACAAACACAAAGTAC
AATGCAAGACAAGTCTGCTTGGATCAGTTGAACCAACATGATGCTGAAAG
CACTTCACAAGTATCAATTGCAACTGTTGGCTTTGCAAAGTTTGGCAGAC
AACGCAGTCAAAAGCCTCTTGATAAACGCATTACAAGTCTGGTTAGGTAA
CcaagaaaatggggaaaatcCAAATAAAGATTCGATCAACAAAGTTCTTA
GTAAATTTTTGAGAAGTGAAAAGAACTCCTTGAAGAGAGGCTATTTCTTA
GCTTCGTTTGCAAAATTACAGAGTTTGATTTACGAGGATGTCACATTGCA
GAAGATCAAAGAGGAGATAGATATCTCTAAGCTGGATGTTCTCCTGGTTA
TCGAGATTCTGGAAAACACAGCTCTCGGTCAATTGGAGGTAGTTGCAAAT
CTATCAAAAGCTTTGANGGAGATAGATATCTCTAAGCTGGATGTTCTCCT
GGTTATCGAGATTCTGGAAAACACAGCTCTCGGTCAATTGGAGGTAGTTG
CAAAGCTATCAAAAGCTTTGAAAGTGATTTCTAATTATCGTGTATTGGTT
GCCAATGAAAACAGTGAAGCATTCTGGGAGCAATTTGAGGAAAATGAAGA
TGGTGTGCTTTTGAGTTTTGATGCTGGTGGTCCAAAAACATGGTCTACTA
TTTGGAAAGAGAATACAAAGAGTGTTATGGATGTGGtgaaacatttacac
caaagcaaTATGCTGAATGCTGTTGATTATCATCATCATTTGGAAGAGAT
AAGACTCTTTGGAAAGTGGTCTAAACAAGAAATTCTTCAGAATTGGTATC
ACCAGATTGAAAAGCAGATCAAATCTTTATCTTTCTTACACAAGATTGAA
AAGCAAGTTCAGAAATATAAAGAAGTTGAGATTGTATTGAGAATCACAAA
TATTGGTTTGAAGATTAGGAAAAATGATGAGAGCTTTCTGTCCTCTTTTG
TTGCGTATTTGAAATCATTCTTCTACGAATCAAACACCAGAGTGGAACCA
GACACAATTGGTCGTATCGAAGATATCGAATTAGATTCTGAATTTGCCGA
CATGGTTAATATAAAGATGGGCTGCTTGATTAGTGCCTTATTTGGCGACC
AAGGGTTGGTGGAGAATTCCTTGGTCGAAGTTTCGAAAGGGGTTAAAGTC
ACCGAGGCTAAAGACGAGGAAGATCGTTTGTTGCCAATAACATTGACATT
TGAACTTGTCCAAAAACATAACTTCTGTAAATCTAGTTCGACCGAATCTT
ATGAATTGTGGAAAACACTATCCGAAGAGATTACTCAATGCATCAAAGAC
ACAATGTCGATTGATGTGGATTTGTTCAGAACAAGCTGGTTGAAGGAGGC
TAATGGTAATAAAGTCACCGTTTTTATCATCAAGTATTCCTTAAAGCCTT
GGTTGCAATCTGAATGTGAAAACCTTATCCAGAATCTCCAAGACTGGACA
CAATTTACAACACCTGTTATCGGTGTGATGAACAACGATCAAATCATGGC
AAACCTAGCTACAATGGTGTACCGAATTTCAACTTATAATCATCACTTCT
TTGATGTGTTGGAGAATTTTTCAGTAGCTTTTAACGAGAAATCGTTCACC
ACTGTCGCACTTGCTGATGAAATAAAG Run BLAST on NCBI protein sequence of TCONS_00012034-protein >TCONS_00012034-protein ID=TCONS_00012034-protein|Name=TCONS_00012034-protein|organism=Clytia hemisphaerica|type=polypeptide|length=530bp
MMLKALHKYQLQLLALQSLADNAVKSLLINALQVWLGNQENGENPNKDSI
NKVLSKFLRSEKNSLKRGYFLASFAKLQSLIYEDVTLQKIKEEIDISKLD
VLLVIEILENTALGQLEVVANLSKALXEIDISKLDVLLVIEILENTALGQ
LEVVAKLSKALKVISNYRVLVANENSEAFWEQFEENEDGVLLSFDAGGPK
TWSTIWKENTKSVMDVVKHLHQSNMLNAVDYHHHLEEIRLFGKWSKQEIL
QNWYHQIEKQIKSLSFLHKIEKQVQKYKEVEIVLRITNIGLKIRKNDESF
LSSFVAYLKSFFYESNTRVEPDTIGRIEDIELDSEFADMVNIKMGCLISA
LFGDQGLVENSLVEVSKGVKVTEAKDEEDRLLPITLTFELVQKHNFCKSS
STESYELWKTLSEEITQCIKDTMSIDVDLFRTSWLKEANGNKVTVFIIKY
SLKPWLQSECENLIQNLQDWTQFTTPVIGVMNNDQIMANLATMVYRISTY
NHHFFDVLENFSVAFNEKSFTTVALADEIK Run BLAST on NCBI transcript from alignment at sc0000136:444889..447375+ Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00012034 ID=TCONS_00012034|Name=TCONS_00012034|organism=Clytia hemisphaerica|type=transcript|length=2487bp|location=Sequence derived from alignment at sc0000136:444889..447375+ (Clytia hemisphaerica)
AGTCTTGAAGATGGGGTCGAAATACACCGAATCTTATTTTACCATGGTTG
TCCAAAAAGTTGATTCCGTACTTAGCACTTTCCATACAAACACAAAGTAC
AATGCAAGACAAGTCTGCTTGGTGAgtcttttcttataagaaacaaaGTT
TAGTTTTGTGGTTAATTTGatgtttattattttcaaatctgTTTCAACAC
TCTTTTGATACAGCTTTTGCAAaaacttctttttcaatttttgtaaattt
cattAGATAGATTCGATTCGGATTGAAGGTGAGGTAAGTGATGGACAGTG
ATGTTTGAGTGTGGCCGGTGATTGGATTAAGCAACTTGTTCACATAATTC
GGAAGGGTGGGGATAAAATAGATGCTTGGGTATTTCCGTATAAAATCAAA
TTCCTTCAAGTAAAGGTGTAAAGTGTACAATTAAGTACTCTCTCTAAAGG
TCGTATTTACACTTTGACGGTCTCTCTAACGGTccaaaagccaaaaaatg
taaaaagggAAGTTTTGCGTTCCTCGCATAACCGATACTATCCAATCATA
AAGTCCGCTCACTTTAACTATGCACCCTTTTCTATCCGCTACCGTGTTGA
AACCACATTAGCGTAATTAGATTAATTGTCTCTTGACAGTGGCTTCCACA
TGATAAAAAAAGAGTGCCCACTAAAGCGAATTAGCCTGTACTACCCCGCC
GCCAAGggcgttttttatattttgaaaaaaaacttgtcATAACTTcgcgt
tatcttttcagtcagcgaagaagagtCTGGTACAGGCTAAAGCGAATGAA
CTTCAGTACTCTCACGGTCCACATAACAGACCTAGGTATGTTCAACCTAT
AAATTTATCTTTCTTCGATTTCACTCATCAGGATCAGTTGAACCAACATG
ATGCTGAAAGCACTTCACAAGTATCAATTGCAACTGTTGGCTTTGCAAAG
TTTGGCAGACAACGCAGTCAAAAGCCTCTTGATAAACGCATTACAAGTCT
GGTTAGGTAACcaagaaaatggggaaaatcCAAATAAAGATTCGATCAAC
AAAGTTCTTAGTAAATTTTTGAGAAGTGAAAAGAACTCCTTGAAGAGAGG
CTATTTCTTAGCTTCGTTTGCAAAATTACAGAGTTTGATTTACGAGGATG
TCACATTGCAGAAGATCAAAGAGGAGATAGATATCTCTAAGCTGGATGTT
CTCCTGGTTATCGAGATTCTGGAAAACACAGCTCTCGGTCAATTGGAGGT
AGTTGCAAATCTATCAAAAGCTTTGANGGAGATAGATATCTCTAAGCTGG
ATGTTCTCCTGGTTATCGAGATTCTGGAAAACACAGCTCTCGGTCAATTG
GAGGTAGTTGCAAAGCTATCAAAAGCTTTGAAAGTGATTTCTAATTATCG
TGTATTGGTTGCCAATGAAAACAGTGAAGCATTCTGGGAGCAATTTGAGG
AAAATGAAGATGGTGTGCTTTTGAGTTTTGATGCTGGTGGTCCAAAAACA
TGGTCTACTATTTGGAAAGAGAATACAAAGAGTGTTATGGATGTGGtgaa
acatttacaccaaagcaaTATGCTGAATGCTGTTGATTATCATCATCATT
TGGAAGAGATAAGACTCTTTGGAAAGTGGTCTAAACAAGAAATTCTTCAG
AATTGGTATCACCAGATTGAAAAGCAGATCAAATCTTTATCTTTCTTACA
CAAGATTGAAAAGCAAGTTCAGAAATATAAAGAAGTTGAGATTGTATTGA
GAATCACAAATATTGGTTTGAAGATTAGGAAAAATGATGAGAGCTTTCTG
TCCTCTTTTGTTGCGTATTTGAAATCATTCTTCTACGAATCAAACACCAG
AGTGGAACCAGACACAATTGGTCGTATCGAAGATATCGAATTAGATTCTG
AATTTGCCGACATGGTTAATATAAAGATGGGCTGCTTGATTAGTGCCTTA
TTTGGCGACCAAGGGTTGGTGGAGAATTCCTTGGTCGAAGTTTCGAAAGG
GGTTAAAGTCACCGAGGCTAAAGACGAGGAAGATCGTTTGTTGCCAATAA
CATTGACATTTGAACTTGTCCAAAAACATAACTTCTGTAAATCTAGTTCG
ACCGAATCTTATGAATTGTGGAAAACACTATCCGAAGAGATTACTCAATG
CATCAAAGACACAATGTCGATTGATGTGGATTTGTTCAGAACAAGCTGGT
TGAAGGAGGCTAATGGTAATAAAGTCACCGTTTTTATCATCAAGTATTCC
TTAAAGCCTTGGTTGCAATCTGAATGTGAAAACCTTATCCAGAATCTCCA
AGACTGGACACAATTTACAACACCTGTTATCGGTGTGATGAACAACGATC
AAATCATGGCAAACCTAGCTACAATGGTGTACCGAATTTCAACTTATAAT
CATCACTTCTTTGATGTGTTGGAGAATTTTTCAGTAGCTTTTAACGAGAA
ATCGTTCACCACTGTCGCACTTGCTGATGAAATAAAG Coding sequence (CDS) from alignment at sc0000136:444889..447375+ >TCONS_00012034 ID=TCONS_00012034|Name=TCONS_00012034|organism=Clytia hemisphaerica|type=CDS|length=1590bp|location=Sequence derived from alignment at sc0000136:444889..447375+ (Clytia hemisphaerica)
ATGATGCTGAAAGCACTTCACAAGTATCAATTGCAACTGTTGGCTTTGCA
AAGTTTGGCAGACAACGCAGTCAAAAGCCTCTTGATAAACGCATTACAAG
TCTGGTTAGGTAACcaagaaaatggggaaaatcCAAATAAAGATTCGATC
AACAAAGTTCTTAGTAAATTTTTGAGAAGTGAAAAGAACTCCTTGAAGAG
AGGCTATTTCTTAGCTTCGTTTGCAAAATTACAGAGTTTGATTTACGAGG
ATGTCACATTGCAGAAGATCAAAGAGGAGATAGATATCTCTAAGCTGGAT
GTTCTCCTGGTTATCGAGATTCTGGAAAACACAGCTCTCGGTCAATTGGA
GGTAGTTGCAAATCTATCAAAAGCTTTGANGGAGATAGATATCTCTAAGC
TGGATGTTCTCCTGGTTATCGAGATTCTGGAAAACACAGCTCTCGGTCAA
TTGGAGGTAGTTGCAAAGCTATCAAAAGCTTTGAAAGTGATTTCTAATTA
TCGTGTATTGGTTGCCAATGAAAACAGTGAAGCATTCTGGGAGCAATTTG
AGGAAAATGAAGATGGTGTGCTTTTGAGTTTTGATGCTGGTGGTCCAAAA
ACATGGTCTACTATTTGGAAAGAGAATACAAAGAGTGTTATGGATGTGGt
gaaacatttacaccaaagcaaTATGCTGAATGCTGTTGATTATCATCATC
ATTTGGAAGAGATAAGACTCTTTGGAAAGTGGTCTAAACAAGAAATTCTT
CAGAATTGGTATCACCAGATTGAAAAGCAGATCAAATCTTTATCTTTCTT
ACACAAGATTGAAAAGCAAGTTCAGAAATATAAAGAAGTTGAGATTGTAT
TGAGAATCACAAATATTGGTTTGAAGATTAGGAAAAATGATGAGAGCTTT
CTGTCCTCTTTTGTTGCGTATTTGAAATCATTCTTCTACGAATCAAACAC
CAGAGTGGAACCAGACACAATTGGTCGTATCGAAGATATCGAATTAGATT
CTGAATTTGCCGACATGGTTAATATAAAGATGGGCTGCTTGATTAGTGCC
TTATTTGGCGACCAAGGGTTGGTGGAGAATTCCTTGGTCGAAGTTTCGAA
AGGGGTTAAAGTCACCGAGGCTAAAGACGAGGAAGATCGTTTGTTGCCAA
TAACATTGACATTTGAACTTGTCCAAAAACATAACTTCTGTAAATCTAGT
TCGACCGAATCTTATGAATTGTGGAAAACACTATCCGAAGAGATTACTCA
ATGCATCAAAGACACAATGTCGATTGATGTGGATTTGTTCAGAACAAGCT
GGTTGAAGGAGGCTAATGGTAATAAAGTCACCGTTTTTATCATCAAGTAT
TCCTTAAAGCCTTGGTTGCAATCTGAATGTGAAAACCTTATCCAGAATCT
CCAAGACTGGACACAATTTACAACACCTGTTATCGGTGTGATGAACAACG
ATCAAATCATGGCAAACCTAGCTACAATGGTGTACCGAATTTCAACTTAT
AATCATCACTTCTTTGATGTGTTGGAGAATTTTTCAGTAGCTTTTAACGA
GAAATCGTTCACCACTGTCGCACTTGCTGATGAAATAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00012034-exon-sc0000136-1491911889:444889..445009 | TCONS_00012034-exon-sc0000136-1491911889:444889..445009 | Clytia hemisphaerica | exon |
| TCONS_00012034-exon-sc0000136-1510915933:444889..445009 | TCONS_00012034-exon-sc0000136-1510915933:444889..445009 | Clytia hemisphaerica | exon |
| TCONS_00012034-exon-sc0000136-1575043694:444889..445009 | TCONS_00012034-exon-sc0000136-1575043694:444889..445009 | Clytia hemisphaerica | exon |
| TCONS_00012034-exon-sc0000136-1491911889:445770..447375 | TCONS_00012034-exon-sc0000136-1491911889:445770..447375 | Clytia hemisphaerica | exon |
| TCONS_00012034-exon-sc0000136-1510915933:445770..447375 | TCONS_00012034-exon-sc0000136-1510915933:445770..447375 | Clytia hemisphaerica | exon |
| TCONS_00012034-exon-sc0000136-1575043694:445770..447375 | TCONS_00012034-exon-sc0000136-1575043694:445770..447375 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| sc0000136 | supercontig | sc0000136:444889..447375 + |
Blast
The following BLAST results are available for this feature:
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