TCONS_00011891 (transcript) - C. hemisphaerica

Overview
NameTCONS_00011891
Unique NameTCONS_00011891
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1092

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00011891 ID=TCONS_00011891|Name=TCONS_00011891|organism=Clytia hemisphaerica|type=transcript|length=1092bp
ctgtgGAACCTTCAATTATGCAATTAGCAGATCCTGCTACCATTCTTGCT
CATTACACTGATTTTGGTCGAGTGGGGAACAATAATGTTGCTTTTCAAGC
ACGTTGTTTCGTGAGATATCGGTATGGAAGAAATGAATGGAAGTCATTTT
GGGAGTGAAGTAGAAATTCTAGAGAAATCCCAGAAGAGAGAGATCATGAA
TGGAGTCATGACGCAACATTAAGTAATGCTTGGCATGCAGAAATTTATAT
CATTAGAAGAATTGAAATTGACTCTTCTATTGTTCTTTACAAAGAGCcat
taaccaatcaaattcatCAACAACCGCACAATGTAAGTGCATANAAATTG
ACTATTCTATTGTTCTTTACAAAGAGCcattaaccaatcaaattcatCAA
CAACCGCGCAATGTAAGTGAATGTTATTACACGTGCAAACCACGTGGTTT
GTATTGTCATTACGCTGGCGCTAAGTTCACCACAAGGTATCACCGACCAG
ATCAAATATTCAGAATCAAATGCTCATACcctaaaaacattatttacgaG
AAAGATTATAAATTCACTTGCTTTAATCCTCAAATTGTAGAGATAAATGA
TAAAGATGTACTAGATCCGACACCAGATGTTGTCACGTGTGTTGGTTTAG
ATGAAGGTGTTTTATACTGGGAAAAAGGCGAAAATGGCTGGCGTGATTGG
AATGAAATATTGTTAGATTGTTACAGGGAAGAAAAAGTAGAAATTGAAAT
ATGTCTCAATACCTCCCCTTGTGAAGATTGTTTAATGAAGCTGCTAGAAT
TCACTGAACAGTATAATAATGTAGTTATCCATGTCAAATATGCTACATTT
TATTATCGGAGTAAACAACAAAGTTTTGATGGTGTCAATTCTGCTAAATG
TGAAAATCGCTTGAAAATCACTCCCTTCACCGACATTGATTGGAAAGTTT
TGAACGAGCAAATTGTGTTGTTACAAGAAAGCCTACAAACGTCTCTAGCA
AAAGAACTATACGACCTGAATGAAGCAAAGGAAACTGAACGCAGAAGAGC
GAACCGGCTAGAGGATGATTTAGCTCATCTAAGACGTCATCA
Run BLAST on NCBI

protein sequence of TCONS_00011891-protein

>TCONS_00011891-protein ID=TCONS_00011891-protein|Name=TCONS_00011891-protein|organism=Clytia hemisphaerica|type=polypeptide|length=102bp
MKLLEFTEQYNNVVIHVKYATFYYRSKQQSFDGVNSAKCENRLKITPFTD
IDWKVLNEQIVLLQESLQTSLAKELYDLNEAKETERRRANRLEDDLAHLR
RH
Run BLAST on NCBI

transcript from alignment at sc0000133:73650..74741

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00011891 ID=TCONS_00011891|Name=TCONS_00011891|organism=Clytia hemisphaerica|type=transcript|length=1092bp|location=Sequence derived from alignment at sc0000133:73650..74741 (Clytia hemisphaerica)
TGATGACGTCTTAGATGAGCTAAATCATCCTCTAGCCGGTTCGCTCTTCT
GCGTTCAGTTTCCTTTGCTTCATTCAGGTCGTATAGTTCTTTTGCTAGAG
ACGTTTGTAGGCTTTCTTGTAACAACACAATTTGCTCGTTCAAAACTTTC
CAATCAATGTCGGTGAAGGGAGTGATTTTCAAGCGATTTTCACATTTAGC
AGAATTGACACCATCAAAACTTTGTTGTTTACTCCGATAATAAAATGTAG
CATATTTGACATGGATAACTACATTATTATACTGTTCAGTGAATTCTAGC
AGCTTCATTAAACAATCTTCACAAGGGGAGGTATTGAGACATATTTCAAT
TTCTACTTTTTCTTCCCTGTAACAATCTAACAATATTTCATTCCAATCAC
GCCAGCCATTTTCGCCTTTTTCCCAGTATAAAACACCTTCATCTAAACCA
ACACACGTGACAACATCTGGTGTCGGATCTAGTACATCTTTATCATTTAT
CTCTACAATTTGAGGATTAAAGCAAGTGAATTTATAATCTTTCtcgtaaa
taatgtttttaggGTATGAGCATTTGATTCTGAATATTTGATCTGGTCGG
TGATACCTTGTGGTGAACTTAGCGCCAGCGTAATGACAATACAAACCACG
TGGTTTGCACGTGTAATAACATTCACTTACATTGCGCGGTTGTTGatgaa
tttgattggttaatgGCTCTTTGTAAAGAACAATAGAATAGTCAATTTNT
ATGCACTTACATTGTGCGGTTGTTGatgaatttgattggttaatgGCTCT
TTGTAAAGAACAATAGAAGAGTCAATTTCAATTCTTCTAATGATATAAAT
TTCTGCATGCCAAGCATTACTTAATGTTGCGTCATGACTCCATTCATGAT
CTCTCTCTTCTGGGATTTCTCTAGAATTTCTACTTCACTCCCAAAATGAC
TTCCATTCATTTCTTCCATACCGATATCTCACGAAACAACGTGCTTGAAA
AGCAACATTATTGTTCCCCACTCGACCAAAATCAGTGTAATGAGCAAGAA
TGGTAGCAGGATCTGCTAATTGCATAATTGAAGGTTCcacag

Coding sequence (CDS) from alignment at sc0000133:73650..74741

>TCONS_00011891 ID=TCONS_00011891|Name=TCONS_00011891|organism=Clytia hemisphaerica|type=CDS|length=306bp|location=Sequence derived from alignment at sc0000133:73650..74741 (Clytia hemisphaerica)
ATGACGTCTTAGATGAGCTAAATCATCCTCTAGCCGGTTCGCTCTTCTGC
GTTCAGTTTCCTTTGCTTCATTCAGGTCGTATAGTTCTTTTGCTAGAGAC
GTTTGTAGGCTTTCTTGTAACAACACAATTTGCTCGTTCAAAACTTTCCA
ATCAATGTCGGTGAAGGGAGTGATTTTCAAGCGATTTTCACATTTAGCAG
AATTGACACCATCAAAACTTTGTTGTTTACTCCGATAATAAAATGTAGCA
TATTTGACATGGATAACTACATTATTATACTGTTCAGTGAATTCTAGCAG
CTTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006676XLOC_006676Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011891-proteinTCONS_00011891-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011891-exon-sc0000133-1491911889:73650..74741TCONS_00011891-exon-sc0000133-1491911889:73650..74741Clytia hemisphaericaexon
TCONS_00011891-exon-sc0000133-1510915933:73650..74741TCONS_00011891-exon-sc0000133-1510915933:73650..74741Clytia hemisphaericaexon
TCONS_00011891-exon-sc0000133-1575043694:73650..74741TCONS_00011891-exon-sc0000133-1575043694:73650..74741Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000133supercontigsc0000133:73650..74741 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.924109	0.626888	0.500416	0.400564	0.704381	0.556611	2.01458	1.88603	1.55746	1.17427	2.84944	1.41821	5.87874	6.21613	2.28148	3.28082	1.35729	1.20569	1.32403	0.178775	1.12656	0.966358	0.921361	0.460708	6.16874	6.89144	0.38565	0.235186	1.02569	0.772402
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00011891 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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