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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00011846 ID=TCONS_00011846|Name=TCONS_00011846|organism=Clytia hemisphaerica|type=transcript|length=1402bp
aaaaaaaatgtcaaattcacTTGGATTAAATCCCAATAAAATATCAAAGC
ATTATACGGAGTATGGATATGAGAATCCAGTACGCTGTTTAGTACGTTAC
CGTGGTGGGAATAAAAAATGGAAGACGTTTTGGGAGCGTAGCAGAAAGGA
CAGTGGGGAAAAGGAGCACACTCTCGAACGGAATTATACTGATTGGGAAG
AATATGAAGTTTTAAATGCTGGAAGTTCTAATGGtattgaatatatttta
agaAGACTGGAACTCCTTTTACCAAAACAAAACGACGAGACAGCAACCAA
AGATGTTGGCAATGAAGGATTAGATAGCAATGATTCTGATTATGAAGAAG
AACATGATACTGCTTTTCAAACATCTTCTTTCCGCAGTGATAGATATTCA
TACAAATTGGAATCGTCGTTCATTCACTATCATTACAATGGAGGTAAAGT
GGTTTCAGTCAAACGCTTTAACAATGATGATGAAAAACCTGGCATCTTAT
GCAAACACCCTTCCTATTTGATGCTTAACGGTGAGGGCATGGTAACGTGT
TACAATCCTCGTGATGTTTTATTCTACAACAGCAAGGAAGAGTGCTTTGA
AAGTCAATTTAAGGACTCAGAAGAGGAGAAACCGTTCCTCGTTACTTTCG
ATGATACTGACCGTTTGCAATATGGCAATGACAATATTTGTTATTATAGC
TATTTCCCATACCGGAGTTATAATCTTCCAGGTCGCTTAGAAGTTGAGTT
GTTTTTCAACAAAGCGGTAGATAATGGTGGGAGATTTGAGAAATTTGTGG
AGAAACATCCTAACGTGTTTTTTCATATCAAATATGCTCAGTGTGAAAGT
TCTTATAAGTCTTTGAATAACAACCCTGGCTATCCAATCTTCTTTACACC
TTTCACAGCAAGTGATTGGCAAGTGCTCAACCGTCATTTAGCACAACTTC
AACATGTAGAGTGGAAAGCGTATGTAGAGAATGTGAAGGAAATGTTGGAA
GGAGCATCTCTGGAGACACCTGGTGACCCGTTTGGTCTTCTGGAagaact
taagggctctgaccatagtccaaaaattgattttggtatttgaaaagtta
tatttcaggttccttaacacttttaacaaagaattgcctttataaattgc
tttttaatcgaatcccttaagagtaattaagaatttaattgcaaaaatga
cgttatgaactttaaaaagatgttaataatatgttgcatcaccctctttt
acaaaaagtgcttagttttaacgggtaattaacttttttgtttcaaaatt
tctttacactggctgcgtttagaccagcctggcatttgtaattgcttgca
gtattcttttgaattctattgttccgcgcaattgttcggtttgtcaaatg
cc Run BLAST on NCBI protein sequence of TCONS_00011846-protein >TCONS_00011846-protein ID=TCONS_00011846-protein|Name=TCONS_00011846-protein|organism=Clytia hemisphaerica|type=polypeptide|length=363bp
KKMSNSLGLNPNKISKHYTEYGYENPVRCLVRYRGGNKKWKTFWERSRKD
SGEKEHTLERNYTDWEEYEVLNAGSSNGIEYILRRLELLLPKQNDETATK
DVGNEGLDSNDSDYEEEHDTAFQTSSFRSDRYSYKLESSFIHYHYNGGKV
VSVKRFNNDDEKPGILCKHPSYLMLNGEGMVTCYNPRDVLFYNSKEECFE
SQFKDSEEEKPFLVTFDDTDRLQYGNDNICYYSYFPYRSYNLPGRLEVEL
FFNKAVDNGGRFEKFVEKHPNVFFHIKYAQCESSYKSLNNNPGYPIFFTP
FTASDWQVLNRHLAQLQHVEWKAYVENVKEMLEGASLETPGDPFGLLEEL
KGSDHSPKIDFGI Run BLAST on NCBI transcript from alignment at sc0000133:49463..53715- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00011846 ID=TCONS_00011846|Name=TCONS_00011846|organism=Clytia hemisphaerica|type=transcript|length=4253bp|location=Sequence derived from alignment at sc0000133:49463..53715- (Clytia hemisphaerica)
AAAAAAAATGTCAAATTCACTTGGATTAAATCCCAATAAAATATCAAAGC
ATTATACGGAGTATGGATATGAGAATCCAGTACGCTGTTTAGTACGTTAC
CGTGGTGGGAATAAAAAATGGAAGACGTTTTGGGAGCGTAGCAGAAAGGA
CAGTGGGGAAAAGGAGCACACTCTCGAACGGAATTATACTGATTGGGAAG
AATATGAAGTTTTAAATGCTGGAAGTTCTAATGGTATTGAATATATTTTA
AGAAGACTGGAACTCCTTTTACCAAAACAAAACGACGAGACAGCAACCAA
AGATGTTGGCAATGAAGGATTAGATAGCAATGATTCTGATTATGAAGAAG
AACATGATACTGCTTTTCAAACATCTTCTTTCCGCAGTGATAGGTATGGT
AAACTTTAACCTTCTCAATGAAGAATAGAGCAGTTGACTCTCTCTAATTC
GACCAAGAAATTCCTTCGAATTAGAGAAAAATTTGAATTGCAGAGAATTT
ATATTACCAATGCTTTAGCTCGAATTACAGAAAGATTAGGGAGTGGTCAG
AAAGTATCTATAGGGGGGAGTGGAGGATATTATTTTTGAAAAATCCCAAA
ATACTTTCGCACCCCCTCCCCTAGCCTGGAAAAAAATTTCGAACCCCCCC
CCTCATAAGGCCCAATATTTTTTCCCCCCCCCCCCCCTAGCCTGGAAAAA
AATTTCGAACCCCCCCCCCTCATAAGGCCCAATTTTTTTTCCCCCCCCCC
CCCCTAGCCTGGAAAAAAATTTCGAACCCCCCCCCCTCATAAGGCCCAAT
TTTTTTTCGCCCCCCCCCCCCCCCCACTAGAAAAATTTTTACGCAAAAAA
AGAATTCATACAGATGCGGTACAAAGAGTATTATTTGTTTGTATGACAGT
CAAAATTAGGTAAGGGAGATAGTTTAACCCTGTAAAGTTGAGTATAGTCC
TTTAGGAGATCTACCATTTTGATTGACTTTTACACCACGGGGTTTTTTCC
GTCGATTTCCATGGTTACAACGGAATTTCTCTGGAGTAAACAAAAGGAAA
AACCCGTGGTGTAAACGTCAATCAAAATGGTAGATCTCCTATAGGAATAG
TCCAGGGTTAAAATAAGAATCAACGAGTTATTTTCTCTGAGTTNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
AGATCAGGTACTCGAGACCCTAAAATACAAGCTATTCTGTTGTTAAAAGG
AGTCTGAAAAATAAAATTCTCTGAGTTTGAAATTTCCCTATAAACCTATA
TTTTCAGTTTTTCCAGGGTCTGTCAAAGCTCTGTGTATATAATTTATAAG
ATATTAGTAGAGACTAAGGAGGCACAACCATATGGTTTGCGCCGACGGGA
GAAAATGTCGATGTTTTTCACCACCATATTAGCTAAAATACACTTTGTTT
TGACAAATTTCTTTCTAAAAAGTACTTTTTCAAACCACTCTGATGAGCTG
TGAAAGCCACTAATCTACTTCCCTCTTTTAGCTCAATGCTACAAACCAAA
AGGACAAGGCGATGATGCCCAAATAATGTTAGTATGACATGTACATATAT
GAAATAAAATAAATTCTGAGTTGTCGGCCGTCAGGCCGAAAAATTTTTGA
AATCTTGAAACGTAAAACTATGAAATTAGACTTCCTACATTTTCTCTTGA
GTTGCCCAAAAGATTTGGAACCCCCCCCTAAACCCTCAAAAAAAATTTGA
AAAACCCCCTAAACCCTCGAAAAAATTTTGGAACTCCCCCTAGAATCCTC
CACCCCCCCTAGTAGATACTTTCTGACCACTCCCTTAGAAAAATAGAGGT
TCGAATTAGCGAGAGTTGACTGTAGAATCTACTATCACAGGAAAAAATCG
GTTAAGGTTAAAATACCTCAATAATTTATGAAGAATTAAGTCAGATTGTG
ATTGAGACTGAGTTTAATAATTGATTCAACAAGGTGTTGATTACCTTTTC
ACACTCGCGTGAAAACGAACTGGATCCCAACATAGGAAATCAGTTTTCAC
ACGAGTGTGATTTAATTAATGTGATTTATAATGTGATTTACCTTTATAGG
CCCCATATAGTTAGGTATGTTTTCTGTGTTTATTTATCAAATGTATCAAT
CTTCTCAATGGAAGCTAGAAAAAAATTTCCGATACAGTGATCTATATAGG
TTACACAGCCCCGTGACTTTAGTAACAAAGTGCGTCAGCTTTCTGTAGTT
TCTGTATTACAAAGTGTGGTAGGTAAATTATTACAAAGTGTGTCAGGTAT
TACAAAGCACATCAAGGTGTATTACAAAGCACATCAAGGTGTATTACAAA
GCGTGTCAGGTATTACAAAGCACATCAAGGTGTATTACAAAGGCGTTAGG
TATTACAAAGCACATCAGCAAGGTGTATTACAAAGCGTGTCAGGTATTAC
AAAGCACATAAAGGTGTATTAAAAAGTGTGTCAGGTATTACAAAGTGTGG
CGTTATTAAAAAGTGCGTTAGTACATCCGACGGCGACATCGCAAATATAC
ATATATTGTTTTTTTGGAGTGGAAAAATTAACATTCTAGCCCTTCCATCT
TCCTCTCCTTTCTGTGAAAAAGAAAAACTCGTTAAATACTATCAATGTAA
TACACCCTGGGGGGGGGCACTCGATCCAAAATCAACCATACGTGCTGCCC
AAAAATAAATCGGGCCCTTACATTGGAGAAACATTTTTTGTAAAATTTGA
GCAAATTTAAGCGAAAATTCGACCCTTACAGTGCATTTTCATGAAGATTT
TTGACTATTTTCAGGCAAAATATGGTCTGATTTTCGAAATTTTACAACCT
TAGAGTGCAATTTTCTCATCTTTGTTGATTTCGACCCTTACAGTGCACTT
TTGGAAGCTTGGGAAATATATACTTAAGGGTGGCATGTATGCTAGGCCAT
TTACCTTGAGCCCCCCAGTGATACATCGCTGGAAGAGTAAAAGTTTAGGT
TTAATAGCTAACAGTTTTTCATCTTTTCATCCTTCTACTTATAGATATTC
ATACAAATTGGAATCGTCGTTCATTCACTATCATTACAATGGAGGTAAAG
TGGTTTCAGTCAAACGCTTTAACAATGATGATGAAAAACCTGGCATCTTA
TGCAAACACCCTTCCTATTTGATGCTTAACGGTGAGGGCATGGTAACGTG
TTACAATCCTCGTGATGTTTTATTCTACAACAGCAAGGAAGAGTGCTTTG
AAAGTCAATTTAAGGACTCAGAAGAGGAGAAACCGTTCCTCGTTACTTTC
GATGATACTGACCGTTTGCAATATGGCAATGACAATATTTGTTATTATAG
CTATTTCCCATACCGGAGTTATAATCTTCCAGGTCGCTTAGAAGTTGAGT
TGTTTTTCAACAAAGCGGTAGATAATGGTGGGAGATTTGAGAAATTTGTG
GAGAAACATCCTAACGTGTTTTTTCATATCAAATATGCTCAGTGTGAAAG
TTCTTATAAGTCTTTGAATAACAACCCTGGCTATCCAATCTTCTTTACAC
CTTTCACAGCAAGTGATTGGCAAGTGCTCAACCGTCATTTAGCACAACTT
CAACATGTAGAGTGGAAAGCGTATGTAGAGAATGTGAAGGAAATGTTGGA
AGGAGCATCTCTGGAGACACCTGGTGACCCGTTTGGTCTTCTGGAAGAAC
TTAAGGGCTCTGACCATAGTCCAAAAATTGATTTTGGTATTTGAAAAGTT
ATATTTCAGGTTCCTTAACACTTTTAACAAAGAATTGCCTTTATAAATTG
CTTTTTAATCGAATCCCTTAAGAGTAATTAAGAATTTAATTGCAAAAATG
ACGTTATGAACTTTAAAAAGATGTTAATAATATGTTGCATCACCCTCTTT
TACAAAAAGTGCTTAGTTTTAACGGGTAATTAACTTTTTTGTTTCAAAAT
TTCTTTACACTGGCTGCGTTTAGACCAGCCTGGCATTTGTAATTGCTTGC
AGTATTCTTTTGAATTCTATTGTTCCGCGCAATTGTTCGGTTTGTCAAAT
GCC Coding sequence (CDS) from alignment at sc0000133:49463..53715- >TCONS_00011846 ID=TCONS_00011846|Name=TCONS_00011846|organism=Clytia hemisphaerica|type=CDS|length=2184bp|location=Sequence derived from alignment at sc0000133:49463..53715- (Clytia hemisphaerica)
ATATTCATACAAATTGGAATCGTCGTTCATTCACTATCATTACAATGGAG
GTAAAGTGGTTTCAGTCAAACGCTTTAACAATGATGATGAAAAACCTGGC
ATCTTATGCAAACACCCTTCCTATTTGATGCTTAACGGTGAGGGCATGGT
AACGTGTTACAATCCTCGTGATGTTTTATTCTACAACAGCAAGGAAGAGT
GCTTTGAAAGTCAATTTAAGGACTCAGAAGAGGAGAAACCGTTCCTCGTT
ACTTTCGATGATACTGACCGTTTGCAATATGGCAATGACAATATTTGTTA
TTATAGCTATTTCCCATACCGGAGTTATAATCTTCCAGGTCGCTTAGAAG
TTGAGTTGTTTTTCAACAAAGCGGTAGATAATGGTGGGAGATTTGAGAAA
TTTGTGGAGAAACATCCTAACGTGTTTTTTCATATCAAATATGCTCAGTG
TGAAAGTTCTTATAAGTCTTTGAATAACAACCCTGGCTATCCAATCTTCT
TTACACCTTTCACAGCAAGTGATTGGCAAGTGCTCAACCGTCATTTAGCA
CAACTTCAACATGTAGAGTGGAAAGCGTATGTAGAGAATGTGAAGGAAAT
GTTGGAAGGAGCATCTCTGGAGACACCTGGTGACCCGTTTGGTCTTCTGG
AAGAACTTAAGGGCTCTGACCATAGTCCAAAAATTGATTTTGGTATTTGA
AAAAAAATGTCAAATTCACTTGGATTAAATCCCAATAAAATATCAAAGCA
TTATACGGAGTATGGATATGAGAATCCAGTACGCTGTTTAGTACGTTACC
GTGGTGGGAATAAAAAATGGAAGACGTTTTGGGAGCGTAGCAGAAAGGAC
AGTGGGGAAAAGGAGCACACTCTCGAACGGAATTATACTGATTGGGAAGA
ATATGAAGTTTTAAATGCTGGAAGTTCTAATGGTATTGAATATATTTTAA
GAAGACTGGAACTCCTTTTACCAAAACAAAACGACGAGACAGCAACCAAA
GATGTTGGCAATGAAGGATTAGATAGCAATGATTCTGATTATGAAGAAGA
ACATGATACTGCTTTTCAAACATCTTCTTTCCGCAGTGATAGATATTCAT
ACAAATTGGAATCGTCGTTCATTCACTATCATTACAATGGAGGTAAAGTG
GTTTCAGTCAAACGCTTTAACAATGATGATGAAAAACCTGGCATCTTATG
CAAACACCCTTCCTATTTGATGCTTAACGGTGAGGGCATGGTAACGTGTT
ACAATCCTCGTGATGTTTTATTCTACAACAGCAAGGAAGAGTGCTTTGAA
AGTCAATTTAAGGACTCAGAAGAGGAGAAACCGTTCCTCGTTACTTTCGA
TGATACTGACCGTTTGCAATATGGCAATGACAATATTTGTTATTATAGCT
ATTTCCCATACCGGAGTTATAATCTTCCAGGTCGCTTAGAAGTTGAGTTG
TTTTTCAACAAAGCGGTAGATAATGGTGGGAGATTTGAGAAATTTGTGGA
GAAACATCCTAACGTGTTTTTTCATATCAAATATGCTCAGTGTGAAAGTT
CTTATAAGTCTTTGAATAACAACCCTGGCTATCCAATCTTCTTTACACCT
TTCACAGCAAGTGATTGGCAAGTGCTCAACCGTCATTTAGCACAACTTCA
ACATGTAGAGTGGAAAGCGTATGTAGAGAATGTGAAGGAAATGTTGGAAG
GAGCATCTCTGGAGACACCTGGTGACCCGTTTGGTCTTCTGGAAGAACTT
AAGGGCTCTGACCATAGTCCAAAAATTGATTTTGGTATTTGAAAAAAAAT
GTCAAATTCACTTGGATTAAATCCCAATAAAATATCAAAGCATTATACGG
AGTATGGATATGAGAATCCAGTACGCTGTTTAGTACGTTACCGTGGTGGG
AATAAAAAATGGAAGACGTTTTGGGAGCGTAGCAGAAAGGACAGTGGGGA
AAAGGAGCACACTCTCGAACGGAATTATACTGATTGGGAAGAATATGAAG
TTTTAAATGCTGGAAGTTCTAATGGTATTGAATATATTTTAAGAAGACTG
GAACTCCTTTTACCAAAACAAAACGACGAGACAGCAACCAAAGATGTTGG
CAATGAAGGATTAGATAGCAATGATTCTGATTATGAAGAAGAACATGATA
CTGCTTTTCAAACATCTTCTTTCCGCAGTGATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00011846-exon-sc0000133-1575043694:53323..53715 | TCONS_00011846-exon-sc0000133-1575043694:53323..53715 | Clytia hemisphaerica | exon |
| TCONS_00011846-exon-sc0000133-1575043694:49463..50471 | TCONS_00011846-exon-sc0000133-1575043694:49463..50471 | Clytia hemisphaerica | exon |
| TCONS_00011846-exon-sc0000133-1510915933:53323..53715 | TCONS_00011846-exon-sc0000133-1510915933:53323..53715 | Clytia hemisphaerica | exon |
| TCONS_00011846-exon-sc0000133-1510915933:49463..50471 | TCONS_00011846-exon-sc0000133-1510915933:49463..50471 | Clytia hemisphaerica | exon |
| TCONS_00011846-exon-sc0000133-1491911889:53323..53715 | TCONS_00011846-exon-sc0000133-1491911889:53323..53715 | Clytia hemisphaerica | exon |
| TCONS_00011846-exon-sc0000133-1491911889:49463..50471 | TCONS_00011846-exon-sc0000133-1491911889:49463..50471 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000133 | supercontig | sc0000133:49463..53715 - |
Blast
The following BLAST results are available for this feature:
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