MSTRG.11828.1.p1 (mRNA) -

Overview
NameMSTRG.11828.1.p1
Unique NameMSTRG.11828.1.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000087_pilon:349967..355390-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.11828.1.p1 ID=MSTRG.11828.1.p1|Name=MSTRG.11828.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=5424bp|location=Sequence derived from alignment at sc0000087_pilon:349967..355390- (Clytia hemisphaerica_ch_hm2_pilon)
CTACTATTTCCATTTCTTTAATGTTTCAGATCAAATTTCTAAACAACAAT
AATGAGGGATATAAAAGAATGGTCATTGCATAATGGGTGTACCTGTTAGT
ACACTTGTTTACACCTCCCATAATAACAATAACAGCCGGCGTGAACACGT
CAGCAATAGTTGTGTAAGTGAAACACACAGTAGATTGATACAAGTCATGC
CAGCTGATGATATTAGACGGGTAAGTGATCCGCTATTATTATCAAAAATA
TTTATGACCTTATTTTTATAAGGGATCTTTCTTAAAAAAATACAGGTGGA
ATAGTGCTTATTGTCAAAAAAGTCTTTCCTTTTACTGAGCTGTTGTACCT
CTTTTTATAATTGTCCACTTTGGTCAAAGATTTCATTTCAGTTATTTTGG
AAAGTCATAGAGAAGTTTTAAAGAAATTTTTTAAAAGCTAATTTGTTTTG
ATATTTTTGACTATCTTCATTTTTTCAGAAAGATGGGGAACTTTTAAAGT
ACAAGAACGTTTTTAGTGGATGGGGCAAAAGATATTTTCGATTGGAAAGA
TCTTATTTACATTATTATGAAACAAAACACGTAAGTCGAATCTTTTGTTT
GTTTTTAAAAGTCTCATTCTACTTGTTTATTGGATTAGCGTTTGAATGTT
TAACTTTAAAACTTTAAAACCATGCATCTTTTTTGTGGTTAGCTGACCTT
TTGGACCTTTTCCTAGCACTCTTTTTTAGATTTCTTTCTAAAAGCTTTTG
TAAATTGTTAGATAGTCTTAACCCTCGGGGGGGGGGCACTCGATTTCGAA
ACGACGGCATGTGCCGCCTCAAAAATGGCTTTTTAATCTGACCCATTTCA
GTGCAGCCCTTGAGCAGTGAAAAGGTACCCTTACAGTGCATTTACCAATT
CAGCAGTTCTTAAAAAACACACCCTTACGGCGTATCCAGCTAAAAGAAGA
CCCTTGTATTGTCCTCTATCAAAAGTAGGATGTACTGTACATTTTTAGCG
GGGTCTAGAAAAACCTACCTTTAAGGGCGGCACATGCCGTGGTTCGGACC
ATATGGATGCCCGCCCTCCGGGGCCTTAACACATCAGTAGTTATAAAATA
AATGATTGTTAAAAGTCAATTTGTAACAAAGATCTTTTAGAAGCAAATTT
ATTTCAAAATTTTGAAGTAGCACATTTCTTCAGGTTTCATGCCTTACGGC
AATCATCAGACGTACAAACCAAACATGCATGTATCAAACATAACCAGTCT
TGATTTTTAGAGTCACCAACCAGTAGCCACCATTACACGTGGAGAAATCA
CACAGGTCAAACAAAGTACTGCATACCCTGGACGAAACAATGTTTTCGAA
ATAGTACAGAAAAGTGGAGTCATCTGGTATTGCCAAGCTAGTTCACCGGT
ATGTTTATCCGGTATCCTCGAAGGGAGAAAACATTCACGTAGTAGCTAAT
TTTAATCCTACAGTAAACTCTCTAATTCGAACATCTACTATTCGAATCTT
TCTATAATACGAACTGAAATGTTGGCCCTCAGCCAGGAGTTAGTATAAAA
TACTTTCTCTAATTCGAAGAAAATTCTTGGTCCTTTGAAGAGATCGAATT
AGAGAGAGTCGATTGTATTTCCCTGGACTTCCACTCCTTTTTTTAATTCT
AAACTGAAGGACATTGTGTTTGTTACGCTATGACTTTCTGAGCAAATTTA
ATTTTTGCGTTTTAAATTTCCAAATAATTATCCCGTTGTATTCATAGGGA
GAAATGGTATCATGGATGCAAGCCTTGTCTACTGTTCCTCTTATGGTCAA
CCCCGCGCAGGTAATCATCATTCACGCCAAAATTAGGTTCCTTACTCTTT
CGAAGTAAGCTTACAAGAAAGCGCATTTCCGTTCGTAAAAACGACTTTAC
AAGGAATTGCTTAAAGGTTTTGTTTTAAACAAAGTGATATCGTTTGCTTA
CCCGTCAATTTTAAATCTCAAGTTTTTTCACATTGAATGGACACGAATGT
GGGGTAAGATTGGTCAGAAAGAGAAAGAGAAAACAATTTTTTTTTATTCA
GCACAAACTCGAACACTTAACAATAGGAGACACTGGCCTGATTTAAAGCC
AGTGTCTGATAGAAACTGGAACACTTATGTAAAACTAAAACCTTCAAAGC
CAGACAAAGCAGCCCAATTAATATAGGAAAGGGAAGATTTACCAGGGTCA
AAAATAGGCTTTTAACATTTACTCTCTACTTTTTGTCTTAGTATCCAATG
ATTCCGGCAGATCAAGCGCCTCAAATGCCACCTGCCCCTTTCCCTCCCAC
ACATGCGTATCCAAATAACGCCCAAGCACCGCCCAGATACGATTCACCGT
ACAGGGAGTTGATGAACGATGCACACCACACTGCTTATCATTCCAACACA
CCACACGGTAAAAGATTTTTCGCTTTCTTCCAAGGGATAAATCTGATGTT
TAAAGAAATTTGGTAGTAAAATGTAAATTGTGCGAACCACTACACTAGGT
GGGGTTGTCATGTTTGGTGTTATCGGTTGGTTTTTATAAATTTAAGGACA
AAATGGAGCGAACGAAACTTGATAATATCTTAAACTTTTCATTGTTTGAG
TTGTTTTTTTTGTATGGCAATTTAACATCAACTCTTGAGCAAAATAACCT
GATGGCGGAGTGTTTTCCTTCTTTATTTCTGATATTTTTTTCTATTTTCT
CCTCCCGACTAGAACGTAGTTTAGGTCACGTAGGCCACGTGTCACGGAGA
AAACATTTATCTGATATTCCGATGGTGGATTGGCGGCCGCCCATGCTAAA
GCTCTGAAGGAGCGGTCAATTTCCCATCGGAGAGGAATGATAGTTGGCCT
TTGATGTGCGCACATAAACATAAACATTCCCGAAAACGAGGGCCTCCCGC
TGCAAAATCCTTGACGCGGTTTTGCGAAATTTCGTAATCTAAATCTTCCA
GAATGAGATGTTGAAAAATTTCCCGACAAGCTTTAGCGTGTCGGATGAAA
ATAAGGGAGTGTAAGAGACCTAAATTAAGGGCTCTGACCATAGTGAATTT
TTCATAATTGCCGTGTTTAAAATGTGTTTTCTGACTGATGTAACCAACAA
AACTATGGCATGTTATACATTTTCTGTTAGACAAACTATTCCTGAATCTG
AAAATTCAAAAATTGCATTGAAAAAATTTGATGAAGAAGAAAATGAAGAC
TTTTGTGAGGAAGAGTATTTCAACTTTGAAGAGCTTAGTTTCGGCGAAGA
AAAAACATTTTGAAAAATTTTTCGCAGTAGATGGTGTATCTTTTACCGAA
CAATAAAAATTTTTGCGGAAAATCTTTGTAAATGCTTCTTTGTCTCGAAA
TCTTCAAAATAGTGGTTTTTCATCAATTTTTTACCTGGATTTTGCTTAAA
AAAACAGTCATAACTTTTGACACATCTTTTTAGAAAAATTTTCCGCAAAA
TTTAAAATAGTTCAATTCTTTGAGGACAGTGTAAAGAAATTTTGAAACAA
AAAAGTTAATTACCCATTAAAACTAAGCATTTTTTGTAAAAGAGGGTGAT
GCAACATATTATTAACATCTTTTTAAAGTTCATAACGTCATTTTTGCAAT
TAAATTCTTAATTACTCTTAAGAGATTCGATTAAAAAGCAATTTATAAAG
GCAATTCTTTGTTAAAAGTGTTAAGGAACCTGAAATATAACTTTTATGTT
CAAATACCAAAATCAATTTTTGGACTATGGTCAGAGCCCTTAAGGAGAAG
TGGTCACATCCCAGTGGGAACCATGAGTTTTTAAAAGCTAAAATACGAGT
TATCACTAAGGGAATATTTTGGTTGAAAAAATCTAAGACGACTTTTTAAT
TCGAAATCTTTGGATTACACACTTATACATTATTTCAATTCTTATTCAGA
TTGTATACACGATAGTCCACCGCCACCCTACACTGCCACCCCAATTACAC
CTCAACCACCCCACAATCCTAATTATTAGGAGTATGCAGAATGATTTCTA
GTTCAGATGGATACAAATGTGTTTGATACAAATGAATGGAACGAGATGTT
GGTGTCGATATGCAAATACCAAGTTCCAGCAAGCCTTCTAAGGCTTATTT
TTCCGTTAAATCAGGTTAAATATGTACGATGGAATGGCGGGTCACATTGT
TTCGGGGATATATAAATCTAAATATTTATTTTTTGTACTTTAAGTGGATT
TGTTTTTACGAGACGAGAATTTAAAAATTTCGCGTGGATTAATTTTCGCG
AATCAAGGGTCTTCAAAATTTCAAGTGGATTAAAAAATTTCGCGAATTAG
GCCTTCTTTATTTGATTTCGCGACTACCACCATGTAAATCGAATAATTTT
AGAAAAGAGATGAAGGTAGACAAAGTCACTCAAAATCTTTCAAATAAACC
ACAAGGAAGGTACTCTTAGGAGGTTACTAGGGATTGAAAGTTTAAAATTG
AAATGAAAAGTTTAACTCGTTATGTGTTTTGATTGCAAACTTTTGAGAAT
GTCTACCTGGTTATTCCTTTGTTTTCGCGAACTTTTATTTTCTCGCTTGT
AACATTCCTGCGAATCAAGGGTCTTCAAAATTTTAACGTGGATTAAATTT
CACAAAATGGCCAAAATTCGCAAAAACGCAGAAATTAATCCACTGAAGGT
AATTTCTAATTTTTTGAATCTCGACTACAATTAAAAAAAACTTGAATCAC
AAGGGATTTTAGTTTCCATGGTCCAGGACCAAAAACTACTCAATCTTTAT
CAATTAGCTTTAGTATTAACGTTTTGTATATATTTAATAAAATTGTAAAT
TATCTTTTTTATATAAAATACACCTTCATAATAATCAAATAAAATAATCA
AAAGTAAATGCACAAGATTCACTTGTAAAAGTTTTCAAAATAATATCTGC
TATAGAGTCTATGCAGAAACATCTTGAAAATAGAAACAAAAATCTGTTGA
TATCATGTACAGTATGTCCAGTAATAGCGGGATGGGATTTACGAATTTAT
TATTACAAAAGAAGCAATGCATGTATGGATAGAATCTATTACGTCGTTTT
CCGGAAACAGTGTATAAACATCAAGTGCAAAGTATACCCTTATTTAAAAA
AAACATCATTTAACTTATCTCTTCACATTTTGCTTACACAGCATTTTTAA
AACAACTAAGTTTAACTACATACAACGATTCTCTGTGGGTAACGAACATT
CTTTCAATATTTCTTCCTATTCAATGACATTTTCCATGAATAGTTGCGAT
TTTACACTGTTGTCTACTAGTAGGGGGAAATTTGTTCGTTTTTTTGAGGT
CGCTCGATTTTTTTAGTCAAAGCACTTGTTATACATTTTTGGAAAGCTAA
GGGGTAGGGGAATCAAAATAACTTGGGTGCCAATTTTGTTTCGGACACTT
TGGTGTGATTTTCGGACAAATACG

Coding sequence (CDS) from alignment at sc0000087_pilon:349967..355390-

>MSTRG.11828.1.p1 ID=MSTRG.11828.1.p1|Name=MSTRG.11828.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=4122bp|location=Sequence derived from alignment at sc0000087_pilon:349967..355390- (Clytia hemisphaerica_ch_hm2_pilon)
ATTGTATACACGATAGTCCACCGCCACCCTACACTGCCACCCCAATTACA
CCTCAACCACCCCACAATCCTAATTATTAGTATCCAATGATTCCGGCAGA
TCAAGCGCCTCAAATGCCACCTGCCCCTTTCCCTCCCACACATGCGTATC
CAAATAACGCCCAAGCACCGCCCAGATACGATTCACCGTACAGGGAGTTG
ATGAACGATGCACACCACACTGCTTATCATTCCAACACACCACACGGGAG
AAATGGTATCATGGATGCAAGCCTTGTCTACTGTTCCTCTTATGGTCAAC
CCCGCGCAGAGTCACCAACCAGTAGCCACCATTACACGTGGAGAAATCAC
ACAGGTCAAACAAAGTACTGCATACCCTGGACGAAACAATGTTTTCGAAA
TAGTACAGAAAAGTGGAGTCATCTGGTATTGCCAAGCTAGTTCACCGAAA
GATGGGGAACTTTTAAAGTACAAGAACGTTTTTAGTGGATGGGGCAAAAG
ATATTTTCGATTGGAAAGATCTTATTTACATTATTATGAAACAAAACACA
TGGGTGTACCTGTTAGTACACTTGTTTACACCTCCCATAATAACAATAAC
AGCCGGCGTGAACACGTCAGCAATAGTTGTGTAAGTGAAACACACAGTAG
ATTGATACAAGTCATGCCAGCTGATGATATTAGACGGATTGTATACACGA
TAGTCCACCGCCACCCTACACTGCCACCCCAATTACACCTCAACCACCCC
ACAATCCTAATTATTAGTATCCAATGATTCCGGCAGATCAAGCGCCTCAA
ATGCCACCTGCCCCTTTCCCTCCCACACATGCGTATCCAAATAACGCCCA
AGCACCGCCCAGATACGATTCACCGTACAGGGAGTTGATGAACGATGCAC
ACCACACTGCTTATCATTCCAACACACCACACGGGAGAAATGGTATCATG
GATGCAAGCCTTGTCTACTGTTCCTCTTATGGTCAACCCCGCGCAGAGTC
ACCAACCAGTAGCCACCATTACACGTGGAGAAATCACACAGGTCAAACAA
AGTACTGCATACCCTGGACGAAACAATGTTTTCGAAATAGTACAGAAAAG
TGGAGTCATCTGGTATTGCCAAGCTAGTTCACCGAAAGATGGGGAACTTT
TAAAGTACAAGAACGTTTTTAGTGGATGGGGCAAAAGATATTTTCGATTG
GAAAGATCTTATTTACATTATTATGAAACAAAACACATGGGTGTACCTGT
TAGTACACTTGTTTACACCTCCCATAATAACAATAACAGCCGGCGTGAAC
ACGTCAGCAATAGTTGTGTAAGTGAAACACACAGTAGATTGATACAAGTC
ATGCCAGCTGATGATATTAGACGGATTGTATACACGATAGTCCACCGCCA
CCCTACACTGCCACCCCAATTACACCTCAACCACCCCACAATCCTAATTA
TTAGTATCCAATGATTCCGGCAGATCAAGCGCCTCAAATGCCACCTGCCC
CTTTCCCTCCCACACATGCGTATCCAAATAACGCCCAAGCACCGCCCAGA
TACGATTCACCGTACAGGGAGTTGATGAACGATGCACACCACACTGCTTA
TCATTCCAACACACCACACGGGAGAAATGGTATCATGGATGCAAGCCTTG
TCTACTGTTCCTCTTATGGTCAACCCCGCGCAGAGTCACCAACCAGTAGC
CACCATTACACGTGGAGAAATCACACAGGTCAAACAAAGTACTGCATACC
CTGGACGAAACAATGTTTTCGAAATAGTACAGAAAAGTGGAGTCATCTGG
TATTGCCAAGCTAGTTCACCGAAAGATGGGGAACTTTTAAAGTACAAGAA
CGTTTTTAGTGGATGGGGCAAAAGATATTTTCGATTGGAAAGATCTTATT
TACATTATTATGAAACAAAACACATGGGTGTACCTGTTAGTACACTTGTT
TACACCTCCCATAATAACAATAACAGCCGGCGTGAACACGTCAGCAATAG
TTGTGTAAGTGAAACACACAGTAGATTGATACAAGTCATGCCAGCTGATG
ATATTAGACGGATTGTATACACGATAGTCCACCGCCACCCTACACTGCCA
CCCCAATTACACCTCAACCACCCCACAATCCTAATTATTAGTATCCAATG
ATTCCGGCAGATCAAGCGCCTCAAATGCCACCTGCCCCTTTCCCTCCCAC
ACATGCGTATCCAAATAACGCCCAAGCACCGCCCAGATACGATTCACCGT
ACAGGGAGTTGATGAACGATGCACACCACACTGCTTATCATTCCAACACA
CCACACGGGAGAAATGGTATCATGGATGCAAGCCTTGTCTACTGTTCCTC
TTATGGTCAACCCCGCGCAGAGTCACCAACCAGTAGCCACCATTACACGT
GGAGAAATCACACAGGTCAAACAAAGTACTGCATACCCTGGACGAAACAA
TGTTTTCGAAATAGTACAGAAAAGTGGAGTCATCTGGTATTGCCAAGCTA
GTTCACCGAAAGATGGGGAACTTTTAAAGTACAAGAACGTTTTTAGTGGA
TGGGGCAAAAGATATTTTCGATTGGAAAGATCTTATTTACATTATTATGA
AACAAAACACATGGGTGTACCTGTTAGTACACTTGTTTACACCTCCCATA
ATAACAATAACAGCCGGCGTGAACACGTCAGCAATAGTTGTGTAAGTGAA
ACACACAGTAGATTGATACAAGTCATGCCAGCTGATGATATTAGACGGAT
TGTATACACGATAGTCCACCGCCACCCTACACTGCCACCCCAATTACACC
TCAACCACCCCACAATCCTAATTATTAGTATCCAATGATTCCGGCAGATC
AAGCGCCTCAAATGCCACCTGCCCCTTTCCCTCCCACACATGCGTATCCA
AATAACGCCCAAGCACCGCCCAGATACGATTCACCGTACAGGGAGTTGAT
GAACGATGCACACCACACTGCTTATCATTCCAACACACCACACGGGAGAA
ATGGTATCATGGATGCAAGCCTTGTCTACTGTTCCTCTTATGGTCAACCC
CGCGCAGAGTCACCAACCAGTAGCCACCATTACACGTGGAGAAATCACAC
AGGTCAAACAAAGTACTGCATACCCTGGACGAAACAATGTTTTCGAAATA
GTACAGAAAAGTGGAGTCATCTGGTATTGCCAAGCTAGTTCACCGAAAGA
TGGGGAACTTTTAAAGTACAAGAACGTTTTTAGTGGATGGGGCAAAAGAT
ATTTTCGATTGGAAAGATCTTATTTACATTATTATGAAACAAAACACATG
GGTGTACCTGTTAGTACACTTGTTTACACCTCCCATAATAACAATAACAG
CCGGCGTGAACACGTCAGCAATAGTTGTGTAAGTGAAACACACAGTAGAT
TGATACAAGTCATGCCAGCTGATGATATTAGACGGATTGTATACACGATA
GTCCACCGCCACCCTACACTGCCACCCCAATTACACCTCAACCACCCCAC
AATCCTAATTATTAGTATCCAATGATTCCGGCAGATCAAGCGCCTCAAAT
GCCACCTGCCCCTTTCCCTCCCACACATGCGTATCCAAATAACGCCCAAG
CACCGCCCAGATACGATTCACCGTACAGGGAGTTGATGAACGATGCACAC
CACACTGCTTATCATTCCAACACACCACACGGGAGAAATGGTATCATGGA
TGCAAGCCTTGTCTACTGTTCCTCTTATGGTCAACCCCGCGCAGAGTCAC
CAACCAGTAGCCACCATTACACGTGGAGAAATCACACAGGTCAAACAAAG
TACTGCATACCCTGGACGAAACAATGTTTTCGAAATAGTACAGAAAAGTG
GAGTCATCTGGTATTGCCAAGCTAGTTCACCGAAAGATGGGGAACTTTTA
AAGTACAAGAACGTTTTTAGTGGATGGGGCAAAAGATATTTTCGATTGGA
AAGATCTTATTTACATTATTATGAAACAAAACACATGGGTGTACCTGTTA
GTACACTTGTTTACACCTCCCATAATAACAATAACAGCCGGCGTGAACAC
GTCAGCAATAGTTGTGTAAGTGAAACACACAGTAGATTGATACAAGTCAT
GCCAGCTGATGATATTAGACGG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.11828MSTRG.11828Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.11828.1.p1MSTRG.11828.1.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.11828.1.p1.exon6MSTRG.11828.1.p1.exon6Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11828.1.p1.exon5MSTRG.11828.1.p1.exon5Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11828.1.p1.exon4MSTRG.11828.1.p1.exon4Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11828.1.p1.exon3MSTRG.11828.1.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11828.1.p1.exon2MSTRG.11828.1.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11828.1.p1.exon1MSTRG.11828.1.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000087_pilongenomesc0000087_pilon:349967..355390 -