MSTRG.11169.1.p1 (mRNA) -

Overview
NameMSTRG.11169.1.p1
Unique NameMSTRG.11169.1.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000080_pilon:604790..609138-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.11169.1.p1 ID=MSTRG.11169.1.p1|Name=MSTRG.11169.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=4349bp|location=Sequence derived from alignment at sc0000080_pilon:604790..609138- (Clytia hemisphaerica_ch_hm2_pilon)
ATTAATATTAAGTTGTAGTAGGTCACATACACAACAAGACTTTGATGTGA
CGGAAAGAACGGTGTCAATCGACTTCAAAAATATATACTGGTTATTGGGA
TGGACTTTTCAACATTTCTAACACTTTTACTTTTCTTACACATTTATTCA
AGCTCAGCATACTTCACTCAGCAAGGTAAAACTTTTACTTATATACAGTG
AAGTCACCCTAGTAACTAAATAATGAAGCCTATAAATCTTCTTAACTTTT
TGAAATTTAAACCTAAAAATGTTCTTGTTCTTATTTTCACCATTTTGTGA
GCATTTTTGTCCGTTTTCTTAAGAACTTTGCCATTTTATAGTCTGCAAAG
CCATAAAACGTTCTTGACATTTTGGCCATATCGAAGCCTTATGTTCCTAT
ATAGTTTGTTCTTATAAAAAACGTGCATCTCTAGTTCAGACCACTGTTAT
TTGATTCTACCTCTAATTCGGTCCCCTCAACTGAAAAGTGAGAGAATTTC
CTTGTTATTCAAATTTTTCTCTAATTCGAAGATTTTGTGTCCTTTGGAGA
TGGAATCAAGCAAAAGTTTGCTGACAGCGGGGAGGCTGGGGTGGCTGAAG
CCAGAAAAATAAAACTTTTTTCTACGATTCCTGACAAATTCTATCTCATT
TTGAGCCTTCAGCTCCTCCACTGGGGGTGGGGTTCATGGTTGGAGGGGTT
TATGGTTGGCGGAGGAGCGGAATCGGCATTTAGCAAAAGGTTTTGCGGAA
TTTCGGAGTTGGCCAAAAATATTTAAAATCCGCGGAATTTTTGACAAAAA
CATTGAATTTCAAAGGAATTTTCGGGCGGAATTTCGATTCATCTTTAGAG
GGTTTGACAGAAATTGGAGAAAAAAATTGGCGGAAATGCGGAATTGGGTA
CCCCCTTAAACCCCCTCCACTGTTACTGTTGTTCCACCTGGCCTGACTGA
TACCCTTGTGGTGTTGATTCTAAATTACGTAATTCCATTTAATAATTTTT
TAGATGGTAATTTGACCTGCAATGCAACCAGTATGTCGATTGAATTTGAT
GTCGTTAAACTGATTTCTCGAGGACGTCCGTTCAAAATTCATTTTCAAAA
TGCCAATCTCACCGAGGCTAAAAATTCCTCTGGATCTTCATGCATGCTTC
AGTATAATGGTACAGAAGATATGACAAACAAAACACTCATTTTAGAAGCT
AATTTTAACGAATGTGGAATAGACATTTATCAACAAAACGGCTTTATCGT
ATACAATCAAACTGTTTTAGTGTCTTTTGGTGAGAACCCGAAATCTAGCC
CGGTCTACCGTCTAGAAGAAGTAGCTTTTAAAGTTGGATGTAAGAAATCG
AATAATTTGACGGTCAATCTTGATGGATACTTCAATGTGACAAGTACTTT
GAAGAGAGAAGTAATTTCCGTTGGTAAGAGAATTTTTATTGATTTCAATT
TTATTATTTTCAACCTTTTCATAAATTCCGTCACGAATATTACTTACCTC
GTAATCATACAATTACCATGGTGATCATATCCCTTGACACATTAAATGAT
CTTTTTATGAATAGAAAGTAGTTTTAATAAAATCTGTTGGGAGTTGTTCA
CCTTGGCAATAATTTCAAAACGAGGCAACTGATGTTCGTGACGTAAATTA
TGAAAATCTATTTGTGAGCTATCTTTTTCATCCAACTTTGTTTAAATTTC
TAACAGCCCTGGCGGGAGTAACAGCCTCAATTGCCGTAGAATTTAAGCAT
CCCTTTAGATTTTTCATTTGCTGCAATTGCAGTTTACACATGGAACAGAA
TTTAAGATTCAACCATATGGAACAATAACAATAACAGTCAAAATTTTCCT
TAACAATTGGAACAGCGTTAAAATCGCAAAAAAACTGTATAGTACTGCAG
TGAAGCCACTTTATTGCAATTTTGGCGCTTTTGATTGTTAAGGGAACTAT
TGGATTGTTATAGGTAAGTCCAAAACATTGTCTGGCATTTGAAACTAATT
TAGAATTCAATTTTATTTTGCTTTCTAGACGGCAATGCGAATTTCGATAT
CAGATTATTCCGTACACAAGATGATACATACACCAAAGAAGAATCCTCTT
CCTCTTTGACACTCGGTAACATGATTTATTTCAAGATTCAATTATCATCA
GTTCGAAACGATTTGAAAATCTCTCCACAATCGTGCTATGCTACAAACAC
ACAGAATTCCGCTGAAAGATATTATTTGATTCAGAACAAGTAAGCATACA
CGTTTTTTTTTTATAAGGAACACGTTTATAAGGAACTCGAGGCTGAAAAT
GGTTTAAAAAATAAGGAATTGTTAAGGAACTGCTCAGACTGAGAATAAGT
GGATTTGAAAATAATGTACCTTATTGGGACTAATTTGACCAAATTTTGAT
CTTTCAAGGGGCAAAAAGTTCAAAATTTCCTATGTAGTAAGGAACTCGAT
AAGGAACTTTGAGACTGAAATTCTCTGTAAAAATAAGGAACTCCAGGCTC
AGAGCAAAGTTAAGGTTCCTTATAAAAAAAAAACGTGTATATCATTATTT
TACTGTGAGACAGGGGGGCTATTTTAAATCAATTTTCAAACATAGAAATC
TAAGCTAATAACTTTATATATGTATCGCTCTATTATTCGAAAATATATTT
CATACTAAACCATAGATGTAAAAGACTCAACTTTCACCTCCCAAGCGGTA
TGCAAATTGTCCTACCCTTTTTTATTTAGATGTGAAAATCCCAACGATTC
GACAGTCAAGATCTCTTCTCAAGCCTCACCAACCATCTTTCAATGGAAAA
ATGAAGCTTTCCGATTTTTCAATGCATCCGATTCTGTTTATATAACTTGC
AATGTCTTTATCTGTGAATCTTCAACCATGGTTCAAGCCTGTGACCGTTG
TGAACAATGGAGTGGGAGAAAGAGACGTGGTTTAGATTTGACTGAGCTTG
GAAACAATGAAAAAATAGAAACAGCTACTATAAAATCACCCATCTATATA
TTATTAGGTAAGTCTTAAACTGTTAAAGGTTTTTTTTTCTTATATCAGAG
CGTTCCCGTTTCATATCAGACACGTGTTTCATATATCACGATGATGTCTC
CTTATTATCATGTTGTGATTTCCTCTTTCTTGCGCTCCACATTTTTTTTT
TTTTCTTATTTCTTTTTTATTTTTATTTTTTTTATTTCATTTTATTTATT
TTTTTTTTTTTGAAAAACACATACTGTACATCAGATGATTTGAAGTTGTT
CAAAATAGCTTGGAAAGTACTCATGTTGCTGAAAATAATTTACTTCAAAA
TTTAACTATGACAAGAATTCTAAATGAGGCCCCAACAGCAGACCTTCAAT
TCACGCAATTATGCAATTTTTTCCCCAAATTCACGCATTCACGCAATGTT
TTTCTCGCAATTCACACAATTTTTGTTCACGCAAAACTTTCCTATTCACG
CATTCCCGAAATTGTTTTTAAATTTTCACGCATCATTCATGCAAGTGAAA
AAGCGCATTCTCGCAGTCCGGTGGGGGCCCCCTAAATAAATGATTGCAAC
ATTTATGCTTACATTTTAAATCTTTAAAAAAGTGATACTCGTAAAAAATA
TGTTCACTGAAATCGGGTGGTGCTATTCCAGAATTTAAAGTAAACCTTAT
CAGTCAAGAATAAAGACTAAATTTATTTCGTCTTGAAGACTGCCGTTTCA
GGCAGTCTTCAGTCAGATTTTGAAATCGGATTATTATAAAATCTATTATA
AAATCTGACTGACTGCATGAAACGGCGCGAAACTCAGAGTATCGAAAAAT
AAATTTGTCTCTATTCTTGACTGATAAATCGCTCTACCGATGGTATAGAG
CACTTAAATCATAAGTCATATTTGCAAATAAAGTAAACCTTATATATTCT
CCGTTTCAAATTTCAGATCCTGTTAAACTTGATGACTACAGAACAAAATT
TACACCACTTCAATCCAAAGATGAAACAAATTTATTTGCTGGTGTTAAAG
GATCCATTATTCTTGTACTTTCAATGCTTTTGGTCATCATCATGGCAACT
TTACTGGTTAAAAAGATTCTTGAAAAACGAAATTGTTTCGGTGTTAGTGA
AGAATCGACTTGACAAATTTATATTTAATGTTGAAGTTACGAGATGTTGT
TTGAAAGTTTCATTTTAGTTTATTAATTTCTAAATTATATCACACATAAA
GCGCACATAAATGCAATTTGTAAAAAAAGTATTAAAATTCGTACATTCAT
TAAAAAAATATTATTCAGATTTACAGAAACTTTCGTTTTTTTGATTATTT
TTTACCCTTCAACCCTTTTTTTACGAAATTTTGATTAACTCAAACCAGT

Coding sequence (CDS) from alignment at sc0000080_pilon:604790..609138-

>MSTRG.11169.1.p1 ID=MSTRG.11169.1.p1|Name=MSTRG.11169.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=5910bp|location=Sequence derived from alignment at sc0000080_pilon:604790..609138- (Clytia hemisphaerica_ch_hm2_pilon)
ATCCTGTTAAACTTGATGACTACAGAACAAAATTTACACCACTTCAATCC
AAAGATGAAACAAATTTATTTGCTGGTGTTAAAGGATCCATTATTCTTGT
ACTTTCAATGCTTTTGGTCATCATCATGGCAACTTTACTGGTTAAAAAGA
TTCTTGAAAAACGAAATTGTTTCGGTGTTAGTGAAGAATCGACTTGAATG
TGAAAATCCCAACGATTCGACAGTCAAGATCTCTTCTCAAGCCTCACCAA
CCATCTTTCAATGGAAAAATGAAGCTTTCCGATTTTTCAATGCATCCGAT
TCTGTTTATATAACTTGCAATGTCTTTATCTGTGAATCTTCAACCATGGT
TCAAGCCTGTGACCGTTGTGAACAATGGAGTGGGAGAAAGAGACGTGGTT
TAGATTTGACTGAGCTTGGAAACAATGAAAAAATAGAAACAGCTACTATA
AAATCACCCATCTATATATTATTAGACGGCAATGCGAATTTCGATATCAG
ATTATTCCGTACACAAGATGATACATACACCAAAGAAGAATCCTCTTCCT
CTTTGACACTCGGTAACATGATTTATTTCAAGATTCAATTATCATCAGTT
CGAAACGATTTGAAAATCTCTCCACAATCGTGCTATGCTACAAACACACA
GAATTCCGCTGAAAGATATTATTTGATTCAGAACAAATGGTAATTTGACC
TGCAATGCAACCAGTATGTCGATTGAATTTGATGTCGTTAAACTGATTTC
TCGAGGACGTCCGTTCAAAATTCATTTTCAAAATGCCAATCTCACCGAGG
CTAAAAATTCCTCTGGATCTTCATGCATGCTTCAGTATAATGGTACAGAA
GATATGACAAACAAAACACTCATTTTAGAAGCTAATTTTAACGAATGTGG
AATAGACATTTATCAACAAAACGGCTTTATCGTATACAATCAAACTGTTT
TAGTGTCTTTTGGTGAGAACCCGAAATCTAGCCCGGTCTACCGTCTAGAA
GAAGTAGCTTTTAAAGTTGGATGTAAGAAATCGAATAATTTGACGGTCAA
TCTTGATGGATACTTCAATGTGACAAGTACTTTGAAGAGAGAAGTAATTT
CCGTTGATGGACTTTTCAACATTTCTAACACTTTTACTTTTCTTACACAT
TTATTCAAGCTCAGCATACTTCACTCAGCAAGATCCTGTTAAACTTGATG
ACTACAGAACAAAATTTACACCACTTCAATCCAAAGATGAAACAAATTTA
TTTGCTGGTGTTAAAGGATCCATTATTCTTGTACTTTCAATGCTTTTGGT
CATCATCATGGCAACTTTACTGGTTAAAAAGATTCTTGAAAAACGAAATT
GTTTCGGTGTTAGTGAAGAATCGACTTGAATGTGAAAATCCCAACGATTC
GACAGTCAAGATCTCTTCTCAAGCCTCACCAACCATCTTTCAATGGAAAA
ATGAAGCTTTCCGATTTTTCAATGCATCCGATTCTGTTTATATAACTTGC
AATGTCTTTATCTGTGAATCTTCAACCATGGTTCAAGCCTGTGACCGTTG
TGAACAATGGAGTGGGAGAAAGAGACGTGGTTTAGATTTGACTGAGCTTG
GAAACAATGAAAAAATAGAAACAGCTACTATAAAATCACCCATCTATATA
TTATTAGACGGCAATGCGAATTTCGATATCAGATTATTCCGTACACAAGA
TGATACATACACCAAAGAAGAATCCTCTTCCTCTTTGACACTCGGTAACA
TGATTTATTTCAAGATTCAATTATCATCAGTTCGAAACGATTTGAAAATC
TCTCCACAATCGTGCTATGCTACAAACACACAGAATTCCGCTGAAAGATA
TTATTTGATTCAGAACAAATGGTAATTTGACCTGCAATGCAACCAGTATG
TCGATTGAATTTGATGTCGTTAAACTGATTTCTCGAGGACGTCCGTTCAA
AATTCATTTTCAAAATGCCAATCTCACCGAGGCTAAAAATTCCTCTGGAT
CTTCATGCATGCTTCAGTATAATGGTACAGAAGATATGACAAACAAAACA
CTCATTTTAGAAGCTAATTTTAACGAATGTGGAATAGACATTTATCAACA
AAACGGCTTTATCGTATACAATCAAACTGTTTTAGTGTCTTTTGGTGAGA
ACCCGAAATCTAGCCCGGTCTACCGTCTAGAAGAAGTAGCTTTTAAAGTT
GGATGTAAGAAATCGAATAATTTGACGGTCAATCTTGATGGATACTTCAA
TGTGACAAGTACTTTGAAGAGAGAAGTAATTTCCGTTGATGGACTTTTCA
ACATTTCTAACACTTTTACTTTTCTTACACATTTATTCAAGCTCAGCATA
CTTCACTCAGCAAGATCCTGTTAAACTTGATGACTACAGAACAAAATTTA
CACCACTTCAATCCAAAGATGAAACAAATTTATTTGCTGGTGTTAAAGGA
TCCATTATTCTTGTACTTTCAATGCTTTTGGTCATCATCATGGCAACTTT
ACTGGTTAAAAAGATTCTTGAAAAACGAAATTGTTTCGGTGTTAGTGAAG
AATCGACTTGAATGTGAAAATCCCAACGATTCGACAGTCAAGATCTCTTC
TCAAGCCTCACCAACCATCTTTCAATGGAAAAATGAAGCTTTCCGATTTT
TCAATGCATCCGATTCTGTTTATATAACTTGCAATGTCTTTATCTGTGAA
TCTTCAACCATGGTTCAAGCCTGTGACCGTTGTGAACAATGGAGTGGGAG
AAAGAGACGTGGTTTAGATTTGACTGAGCTTGGAAACAATGAAAAAATAG
AAACAGCTACTATAAAATCACCCATCTATATATTATTAGACGGCAATGCG
AATTTCGATATCAGATTATTCCGTACACAAGATGATACATACACCAAAGA
AGAATCCTCTTCCTCTTTGACACTCGGTAACATGATTTATTTCAAGATTC
AATTATCATCAGTTCGAAACGATTTGAAAATCTCTCCACAATCGTGCTAT
GCTACAAACACACAGAATTCCGCTGAAAGATATTATTTGATTCAGAACAA
ATGGTAATTTGACCTGCAATGCAACCAGTATGTCGATTGAATTTGATGTC
GTTAAACTGATTTCTCGAGGACGTCCGTTCAAAATTCATTTTCAAAATGC
CAATCTCACCGAGGCTAAAAATTCCTCTGGATCTTCATGCATGCTTCAGT
ATAATGGTACAGAAGATATGACAAACAAAACACTCATTTTAGAAGCTAAT
TTTAACGAATGTGGAATAGACATTTATCAACAAAACGGCTTTATCGTATA
CAATCAAACTGTTTTAGTGTCTTTTGGTGAGAACCCGAAATCTAGCCCGG
TCTACCGTCTAGAAGAAGTAGCTTTTAAAGTTGGATGTAAGAAATCGAAT
AATTTGACGGTCAATCTTGATGGATACTTCAATGTGACAAGTACTTTGAA
GAGAGAAGTAATTTCCGTTGATGGACTTTTCAACATTTCTAACACTTTTA
CTTTTCTTACACATTTATTCAAGCTCAGCATACTTCACTCAGCAAGATCC
TGTTAAACTTGATGACTACAGAACAAAATTTACACCACTTCAATCCAAAG
ATGAAACAAATTTATTTGCTGGTGTTAAAGGATCCATTATTCTTGTACTT
TCAATGCTTTTGGTCATCATCATGGCAACTTTACTGGTTAAAAAGATTCT
TGAAAAACGAAATTGTTTCGGTGTTAGTGAAGAATCGACTTGAATGTGAA
AATCCCAACGATTCGACAGTCAAGATCTCTTCTCAAGCCTCACCAACCAT
CTTTCAATGGAAAAATGAAGCTTTCCGATTTTTCAATGCATCCGATTCTG
TTTATATAACTTGCAATGTCTTTATCTGTGAATCTTCAACCATGGTTCAA
GCCTGTGACCGTTGTGAACAATGGAGTGGGAGAAAGAGACGTGGTTTAGA
TTTGACTGAGCTTGGAAACAATGAAAAAATAGAAACAGCTACTATAAAAT
CACCCATCTATATATTATTAGACGGCAATGCGAATTTCGATATCAGATTA
TTCCGTACACAAGATGATACATACACCAAAGAAGAATCCTCTTCCTCTTT
GACACTCGGTAACATGATTTATTTCAAGATTCAATTATCATCAGTTCGAA
ACGATTTGAAAATCTCTCCACAATCGTGCTATGCTACAAACACACAGAAT
TCCGCTGAAAGATATTATTTGATTCAGAACAAATGGTAATTTGACCTGCA
ATGCAACCAGTATGTCGATTGAATTTGATGTCGTTAAACTGATTTCTCGA
GGACGTCCGTTCAAAATTCATTTTCAAAATGCCAATCTCACCGAGGCTAA
AAATTCCTCTGGATCTTCATGCATGCTTCAGTATAATGGTACAGAAGATA
TGACAAACAAAACACTCATTTTAGAAGCTAATTTTAACGAATGTGGAATA
GACATTTATCAACAAAACGGCTTTATCGTATACAATCAAACTGTTTTAGT
GTCTTTTGGTGAGAACCCGAAATCTAGCCCGGTCTACCGTCTAGAAGAAG
TAGCTTTTAAAGTTGGATGTAAGAAATCGAATAATTTGACGGTCAATCTT
GATGGATACTTCAATGTGACAAGTACTTTGAAGAGAGAAGTAATTTCCGT
TGATGGACTTTTCAACATTTCTAACACTTTTACTTTTCTTACACATTTAT
TCAAGCTCAGCATACTTCACTCAGCAAGATCCTGTTAAACTTGATGACTA
CAGAACAAAATTTACACCACTTCAATCCAAAGATGAAACAAATTTATTTG
CTGGTGTTAAAGGATCCATTATTCTTGTACTTTCAATGCTTTTGGTCATC
ATCATGGCAACTTTACTGGTTAAAAAGATTCTTGAAAAACGAAATTGTTT
CGGTGTTAGTGAAGAATCGACTTGAATGTGAAAATCCCAACGATTCGACA
GTCAAGATCTCTTCTCAAGCCTCACCAACCATCTTTCAATGGAAAAATGA
AGCTTTCCGATTTTTCAATGCATCCGATTCTGTTTATATAACTTGCAATG
TCTTTATCTGTGAATCTTCAACCATGGTTCAAGCCTGTGACCGTTGTGAA
CAATGGAGTGGGAGAAAGAGACGTGGTTTAGATTTGACTGAGCTTGGAAA
CAATGAAAAAATAGAAACAGCTACTATAAAATCACCCATCTATATATTAT
TAGACGGCAATGCGAATTTCGATATCAGATTATTCCGTACACAAGATGAT
ACATACACCAAAGAAGAATCCTCTTCCTCTTTGACACTCGGTAACATGAT
TTATTTCAAGATTCAATTATCATCAGTTCGAAACGATTTGAAAATCTCTC
CACAATCGTGCTATGCTACAAACACACAGAATTCCGCTGAAAGATATTAT
TTGATTCAGAACAAATGGTAATTTGACCTGCAATGCAACCAGTATGTCGA
TTGAATTTGATGTCGTTAAACTGATTTCTCGAGGACGTCCGTTCAAAATT
CATTTTCAAAATGCCAATCTCACCGAGGCTAAAAATTCCTCTGGATCTTC
ATGCATGCTTCAGTATAATGGTACAGAAGATATGACAAACAAAACACTCA
TTTTAGAAGCTAATTTTAACGAATGTGGAATAGACATTTATCAACAAAAC
GGCTTTATCGTATACAATCAAACTGTTTTAGTGTCTTTTGGTGAGAACCC
GAAATCTAGCCCGGTCTACCGTCTAGAAGAAGTAGCTTTTAAAGTTGGAT
GTAAGAAATCGAATAATTTGACGGTCAATCTTGATGGATACTTCAATGTG
ACAAGTACTTTGAAGAGAGAAGTAATTTCCGTTGATGGACTTTTCAACAT
TTCTAACACTTTTACTTTTCTTACACATTTATTCAAGCTCAGCATACTTC
ACTCAGCAAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.11169MSTRG.11169Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.11169.1.p1MSTRG.11169.1.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.11169.1.p1.exon5MSTRG.11169.1.p1.exon5Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11169.1.p1.exon4MSTRG.11169.1.p1.exon4Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11169.1.p1.exon3MSTRG.11169.1.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11169.1.p1.exon2MSTRG.11169.1.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11169.1.p1.exon1MSTRG.11169.1.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000080_pilongenomesc0000080_pilon:604790..609138 -