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Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000085_pilon:1108077..1111497+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >MSTRG.11696.3.p1 ID=MSTRG.11696.3.p1|Name=MSTRG.11696.3.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=3421bp|location=Sequence derived from alignment at sc0000085_pilon:1108077..1111497+ (Clytia hemisphaerica_ch_hm2_pilon)
GTGTAAGACGATCACTTCGAAAGCAAATAATAATTAGAGAAAGAACAGAA
ATAAGAAACGTTCAAACGAGATTGAATAAATAACACCCTAGTGTCTTTTG
CGTTTTACTGTTCAACATCTCGTTACGTTTCATTGGAAATTTTCTGCTGG
AAAATATTCTATTAGCAAACCAGCTTGAAGAAAAGAGAagctttgaattt
cttcttcttctgagCGACTTTGTTTTGAGAGGCAGGTGGCTTAGACGTGA
ACAACATTCCCTTAGCCTGTATTCGTTCGCCTACGTGTAAAGGTAAAcac
aaaaagattattttgataaaaagatatgtCTTGTATGGTAAACAAGTAGT
CGGTAGATAGCTTTGAGGTCGTGATAAAGTGCAcggatttttcttctttc
ataaTTGGAAGGCCATTATTTTGGCCTATGGTACTTCTAAAGGCAGGGTG
ATCTCTTATGCAATGAATTCGAACGAGGAAAATGCCTCTGGATATTGAAG
GGAAAATACAACCACTATTAAGATTTTTATGAATTATGCTCTTTCGCAAT
ACAAATGAAGTCATCACCTATTAATTTGACAGTCACGTGCTCTTAGCCAG
TAAAATTTCCTCTTCTAGCTAATAATggagagaaaagagaaaaatggcGG
TATCACTATAAGCGATGTTGATTAGCATTgttactttttttaataagaaa
cttTAATAATCAATTCTATTGTTGTTTGACGGAAGCGACTGATTGTTTGA
TTATAATAGGGGGTTGTCATCACTCACTGTGTGGAGATAAATAGAGTTGT
AAGAGAAAAATTCATCACCATTTATAATCTCAATCACCTCTTGTAGGTTA
AGAAAGCAACATTCAAACCAACCAAGAAAGAATCATCAAAACTCAGACAG
AAGAAATGCAGACACATCGTAGAACACGAAAGTTGAGCACACGTTCACAA
CAATTGATCAATACACTTTATGAATCAGGCGCAGACAGCGGATTGGACAG
TTCAGGAGAAGAGAGCACTCATAGCAGGTAAGagaaaaaaagatgaaatt
gCTTTATTTTGCGGAACAATAATGAATAGGCCCTCACTGTTAAGCTTAAG
TTGCATAACCTGTCTCGAATTCGTTCCAAAAAATTGATGTGAATTTCGCG
GTAGGGGGAATAAGGCAAGGACTTTCCATGTTTCAAATATACACCTCTGC
TAAGTAGCAAATTATATCAGGGCAATAATAAAAACGATTTATAGCTGGAT
TAAACAATTATGTATTCTACTTATCAAATAAGGATAAATTGTGAAACATA
GTATTCATTCTTGGATGAGGAAGGGCTAAAAATAgcctgatataaacaaa
aatatgattATCTAACAGTTTTTGTTTGCAAAAATATGTTGGTCACGAGT
CATATAAAGTCTAATTAGGGGATCAAGGCGAAAATTATGGTTGTTATGAA
TCCCGACCAATCACATTACTCAGGTCCATGGAATGCAAGATAAAATGTTT
GAAGGCATATAAAAGATCTTATTTCGTCAATTTTTTGTGGCAAGGATGAC
AATAAGGGGATATTGATTTGTCCTATATacaaataatcaaaaaaattgtc
atcaTTTTTGTGCCTAGTTCTGACTGTATAACAGTTTATTTGAAATCTGA
TACTGTACACAAGTATCAATTTGTAGAAGATCTGAAGCAACAAGAATATT
ACATCTCACTAGTAATGAAAAAGGGTTTTAAGGAAAGTCCTTGTTTTTAA
TATCCAACAATAGCCTGTGGTTTGTTTTAATTTATGCAGCTCAATAATCT
ATTGTGAAGATGTTTGCATAAATTAACATGAATTAACCAttccattttct
ttttactttcgttttagCGAGGAGATATCAGAGCTATATTTCATAACAGA
CTCAACAGTCAACATGAGGGCCTTCAACGAGCTGGACACCAACATCGAGC
AATTACGTAAAGAAATCATACGCGCTTGCGACAATTTGGTTCGAGCGGTC
GAACAACGCAAGGAAGCATTACTACAACACgtagaaaacattcgaaatga
aaaagcagaaaatctGAAAGCTGAGAAAGACAATTTGAACTATTTGAAAC
CAAGTATGTTGGATATGGGAAGTTGTTTAAGATTTGTTGTGGATGAAGCT
AGAGAAGATACTTCCCTTTACAATATGATCCACGAGTATGGATGCATTGA
TGAAGGCAGAGCATCTGCTTCAAAGTCAGGAGCCAAAGGGATCGGACTTC
GATTCGCTATAGCAGACGAAGCCACACAATTTGAACTTATTACACGCAAT
AATTGCGGTGAAACCAGTTGGGTTGAACAAGACCAAGTTGATGTTACaat
caagaaagaaaatattcatcAAAAGTGCGGTGTTAAAAATAACTGTAATG
GTTCTTATAATGTCTTCTATGAATTACATGAACCAGGACTCTATGAAATC
CATGTTAAAGTGAACGGATGTCATGTTCCAGATTCTCCATTCCGCTGCAA
CGTCTTCGAGAAACACAACGTCAGTTTCTTAGACGACACTCAAGATGAAT
GGACCTTTCAGAATGGTGAAAAATCGGCTCTCTTTGAAAAGAATGAGCAC
CAGCATACTTCAAAATTATACTCCAAAGACAATACCTCAGCACGTGCGTG
GAAAGTACGCGTCAATACCGCTTGTccgaaaatcaaagtcaaattcgGAT
ATTCAAATCACACTAAACTGATTCCGGACTTGacagaagaatatttttgt
aaatttgatttgAACGATTTATTGGGCAATGATTATTCAACCAGTATTCC
TAACCATCACACGTATGCGGATAGCCATTACCACAAGCACAACCGCCGTA
CAAAACACGGGAAGACGCGGGAACGTAAGCAATCTACGTATCACCGTTCA
TCTCTCAATTTCGTCATTTTCCAAGACACAACTGAAAAATTGATCCACGT
TGCGGCCGAGGGGACTGAGCACGAGAAAACGACCTCTTTTAAAGGGGATT
TACAAAAATTAGTGCCTTTCATTGGCATCAAGCACTTCTGTAAGAACTCT
AACTGCCCAAGACCGCAACTTGTTTTTGCGTAGGCTGTTGTCATCAAAAT
Gaaccaaatcaaaacaatttttatataaatatttgtagataaaattttaa
tttttttttggatcatTGCCGATCAGTAAATAGAAATTCTtatgaaaatt
tatgaaaagttcttttttaaatagaaagCCTCTACTTCATGCCGTAATAT
TGTactttatttagaaattttatgatGTAAATAAACTTGTATATATGAAT
AATCTAAAAAGTGAAGAATATTTGTAATATAAAAACCCATATCACATTAt
gaaaagcattttaaaagaattctgaaaaaataaaaataacgaGACATATT
TTTATCtcgaaacttgaaaaa Coding sequence (CDS) from alignment at sc0000085_pilon:1108077..1111497+ >MSTRG.11696.3.p1 ID=MSTRG.11696.3.p1|Name=MSTRG.11696.3.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=2676bp|location=Sequence derived from alignment at sc0000085_pilon:1108077..1111497+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGCAGACACATCGTAGAACACGAAAGTTGAGCACACGTTCACAACAATT
GATCAATACACTTTATGAATCAGGCGCAGACAGCGGATTGGACAGTTCAG
GAGAAGAGAGCACTCATAGCAGCGAGGAGATATCAGAGCTATATTTCATA
ACAGACTCAACAGTCAACATGAGGGCCTTCAACGAGCTGGACACCAACAT
CGAGCAATTACGTAAAGAAATCATACGCGCTTGCGACAATTTGGTTCGAG
CGGTCGAACAACGCAAGGAAGCATTACTACAACACgtagaaaacattcga
aatgaaaaagcagaaaatctGAAAGCTGAGAAAGACAATTTGAACTATTT
GAAACCAAGTATGTTGGATATGGGAAGTTGTTTAAGATTTGTTGTGGATG
AAGCTAGAGAAGATACTTCCCTTTACAATATGATCCACGAGTATGGATGC
ATTGATGAAGGCAGAGCATCTGCTTCAAAGTCAGGAGCCAAAGGGATCGG
ACTTCGATTCGCTATAGCAGACGAAGCCACACAATTTGAACTTATTACAC
GCAATAATTGCGGTGAAACCAGTTGGGTTGAACAAGACCAAGTTGATGTT
ACaatcaagaaagaaaatattcatcAAAAGTGCGGTGTTAAAAATAACTG
TAATGGTTCTTATAATGTCTTCTATGAATTACATGAACCAGGACTCTATG
AAATCCATGTTAAAGTGAACGGATGTCATGTTCCAGATTCTCCATTCCGC
TGCAACGTCTTCGAGAAACACAACGTCAGTTTCTTAGACGACACTCAAGA
TGAATGGACCTTTCAGAATGGTGAAAAATCGGCTCTCTTTGAAAAGAATG
AGCACCAGCATACTTCAAAATTATACTCCAAAGACAATACCTCAGCACGT
GCGTGGAAAGTACGCGTCAATACCGCTTGTccgaaaatcaaagtcaaatt
cgGATATTCAAATCACACTAAACTGATTCCGGACTTGacagaagaatatt
tttgtaaatttgatttgAACGATTTATTGGGCAATGATTATTCAACCAGT
ATTCCTAACCATCACACGTATGCGGATAGCCATTACCACAAGCACAACCG
CCGTACAAAACACGGGAAGACGCGGGAACGTAAGCAATCTACGTATCACC
GTTCATCTCTCAATTTCGTCATTTTCCAAGACACAACTGAAAAATTGATC
CACGTTGCGGCCGAGGGGACTGAGCACGAGAAAACGACCTCTTTTAAAGG
GGATTTACAAAAATTAGTGCCTTTCATTGGCATCAAGCACTTCTGTAAGA
ACTCTAACTGCCCAAGACCGCAACTTGTTTTTGCGTAGATGCAGACACAT
CGTAGAACACGAAAGTTGAGCACACGTTCACAACAATTGATCAATACACT
TTATGAATCAGGCGCAGACAGCGGATTGGACAGTTCAGGAGAAGAGAGCA
CTCATAGCAGCGAGGAGATATCAGAGCTATATTTCATAACAGACTCAACA
GTCAACATGAGGGCCTTCAACGAGCTGGACACCAACATCGAGCAATTACG
TAAAGAAATCATACGCGCTTGCGACAATTTGGTTCGAGCGGTCGAACAAC
GCAAGGAAGCATTACTACAACACgtagaaaacattcgaaatgaaaaagca
gaaaatctGAAAGCTGAGAAAGACAATTTGAACTATTTGAAACCAAGTAT
GTTGGATATGGGAAGTTGTTTAAGATTTGTTGTGGATGAAGCTAGAGAAG
ATACTTCCCTTTACAATATGATCCACGAGTATGGATGCATTGATGAAGGC
AGAGCATCTGCTTCAAAGTCAGGAGCCAAAGGGATCGGACTTCGATTCGC
TATAGCAGACGAAGCCACACAATTTGAACTTATTACACGCAATAATTGCG
GTGAAACCAGTTGGGTTGAACAAGACCAAGTTGATGTTACaatcaagaaa
gaaaatattcatcAAAAGTGCGGTGTTAAAAATAACTGTAATGGTTCTTA
TAATGTCTTCTATGAATTACATGAACCAGGACTCTATGAAATCCATGTTA
AAGTGAACGGATGTCATGTTCCAGATTCTCCATTCCGCTGCAACGTCTTC
GAGAAACACAACGTCAGTTTCTTAGACGACACTCAAGATGAATGGACCTT
TCAGAATGGTGAAAAATCGGCTCTCTTTGAAAAGAATGAGCACCAGCATA
CTTCAAAATTATACTCCAAAGACAATACCTCAGCACGTGCGTGGAAAGTA
CGCGTCAATACCGCTTGTccgaaaatcaaagtcaaattcgGATATTCAAA
TCACACTAAACTGATTCCGGACTTGacagaagaatatttttgtaaatttg
atttgAACGATTTATTGGGCAATGATTATTCAACCAGTATTCCTAACCAT
CACACGTATGCGGATAGCCATTACCACAAGCACAACCGCCGTACAAAACA
CGGGAAGACGCGGGAACGTAAGCAATCTACGTATCACCGTTCATCTCTCA
ATTTCGTCATTTTCCAAGACACAACTGAAAAATTGATCCACGTTGCGGCC
GAGGGGACTGAGCACGAGAAAACGACCTCTTTTAAAGGGGATTTACAAAA
ATTAGTGCCTTTCATTGGCATCAAGCACTTCTGTAAGAACTCTAACTGCC
CAAGACCGCAACTTGTTTTTGCGTAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000085_pilon | genome | sc0000085_pilon:1108077..1111497 + |
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