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Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000087_pilon:1225720..1229492+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >MSTRG.11883.5.p1 ID=MSTRG.11883.5.p1|Name=MSTRG.11883.5.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=3773bp|location=Sequence derived from alignment at sc0000087_pilon:1225720..1229492+ (Clytia hemisphaerica_ch_hm2_pilon)
AAATCAAGCAAGCCAAACGATATCTCGTGGTTGCTCTTGAAGGGACAGAT
GAAATAGAAAAGACATTTTTACTAATAGGTACGAATTATTTTTATGCGAA
AAGATTGGTTACATGTTTAAAATGGTCACTAGGATCGAATCTTTGTAGAA
GCTTGCACTATTTCAACGGgtaaacttttatatttttgaaagatcTACCG
TACGTCGAATACTTAGAATAAGTATTGGAGTTACAACGTCATGAAAATTA
AGGAACTTGTAAAACATATTTTGAATTAGATTTTCTATTCCTCaactttt
tgtttgaaaaagaggTTTAGGGAATAACCCTGCTTACAGCTCTTTAATCT
TGAATGCTTAACAAAGAGAATTTTGAAATCTGATGTTGTGAAAATGTTTG
TCATTGGGCGGGAATCGCTCCCACAATCAATCAGTAAGGGAACCAATTGA
CTTTATCTCCAtgacgtccatataacgtttgagtaaatgattttgatatt
tggtaCCCCACGAAATCAGGAAAGTTAAATTACTCTAATCAACAATTATA
CAATTGACCCGGAAGAACTGTATACTGGATCACTAATTATATCGATAATT
GCGTGAAGCATGTGCCAGtcgtagatctttttctctggtgtctgactttg
gtttgttttagttttgattgtttttcttttacttttcttatGTGCTTTGA
CCTAGTTAAAATGTACTATTTAACAATGGGAACTTAGGGAGTCTTCTTTT
CAAGATTCTTTATTTATTAAGTGATACAAATTTGGGCATGGTTGAACCTT
TGGGCGTGGCCCTAGCATGTGCTGTATATGTAGCGAAACGAATATTATAA
TTAAATAGCTTGTATTTCAGTGATTTCCATTATTTCATTGTCGACTACGA
AAACATTtaggaaaatatcaaaacatctTTTCATGGAGAAAAGCCTTGCT
CTAAATCTAATATAAACTtaggaaaaactgtttttggcTCCTGTCTGAAC
CTTTTTGCAATGCTTTACACGTCTCGTAGTTAATTTCAGTAACAACTTTC
AAGAtgtgaaaagaaaaaactttgacAATTTATGTTTTTGTTCGTTCTCA
GGAGCAGAAGAAATGGTTGCCACAAAGAAATCACAAACTACACTCTGGAT
TTATTTGTATCGTTGTTCGAAACTCGGGCCTCGTTCTTTATGGATCAAAC
AATCGAATTGTGTCTTAGAAGAACTAACCAGAACGATATGCGATAAAGCG
ATTCGTCATCGAATGACAAAAGCCTCTATCGATCATTCTCCGATCAAAAG
TCCGAAACTTTACGAAACGCCGTCCGAGAAAACAATGCAATGCGTAAAAG
ATATGATTGATTTGATAGTCTCTTCACATCCGGAACTCTATACGGAAATC
ACATTCAAGTTAAACATACCGGTTCAAGACGAGCGGACTGTATGTAGAAC
GTATAGGTGAGCATCATTATAAAGACCACACCCATACATTATTGcccccc
cTGTTGTTTCGAAACTATATTGATCAATTCTAGTGGTTTGTTTTGAGTCA
TTTCTAACTAATATTTCGTTTCGTATAAGGGATCTGTAGCATGTAAGCTT
GGTCAAAGTATTGTCTAACCAAAGGTATATAGGTGAAATGTCGTTGAAAA
ACATTGAGCTGTTTAGGTGTTGACTCTCTTTAAACTGGAGAcggagcaaa
aaaaaaacagatttaaggGCGGAGTTTGAATCGGGTGGAGATTACCGGAA
ATAAAGACACATCCGAGAATATTCATATATTCTTATAGGTTGCACTTTGT
AGCCGAAGTTGCATTTTCAGCATATCCATTcccattcattttattttagt
gaGTTTGCTGAGAATCTGTTCAAGCGAGGAGTTTCATGGCCGCTCATCAT
TTCACTGTTGTCGTTTTCCGGAAGTCTAGCAGCGGAGTGTACGCGGAACG
GGCGGAGTATTTTAGTACGACGTATTTGCGATTGGGCAACGTTATTTATC
GTGATGAGACTGAAAGATTGGATACAAGATAATGGCGGATGGGTGAGTTT
AATGATATTcgtatttcatatttttctaaagTTGCAAGACTTTCTGTTTT
CAAGTAAGTTTTTTCTCTTTAGAAGTAAGTTTAGTCACTCTTTTTCCGAC
AACGCGTATAGATCGCAAAACTATTTCAAGTTGCAagactttcttttttc
aataattcgGAAGGGTTACATCTTACGAATTTTCGGGtcaaatctcaatg
gggatttttttCGCTGTAAGTGTTTGTTTGGAGGAGAGCCTTAGGGTAAT
TGGTTATCCTCCTTTTTACAAGAAATGTAATTATCAGACTATGGGATCAA
CTCAAGGTCGGGTTCGACACCAGATTTGGCTAGACTACCGCAGTAACCCT
AACACTCCAAAAGTCTGCTCAGCAATCAAATCAATCCGATTGATTTAGTC
TCAAAATTATGATGTAatgttaaggccggtctccactttcacgcgaaatg
ggtgacagtttttttcttaaccttttttgcctgaagaaaaattTACGTCA
TAagaaagtttcgcgcgaacaaaaaaaagttgaaggaagtttttcaaccg
ttacgtcaatgTTGACCagtggaattgcttcatttttcaaccgaccaatg
accttacaaaaactttatgctcatttcgcgcgaaagtggagaacGGCCTT
ATTACCAAATCAACTAATCAGTGACATAGAAAGTAATTTGATTATTGAGC
AAATTTTGGATCGTTACGTTAACAGGTAGCTTCGATAGTTCATGACCAAT
TTAAATCAGCGGGAGTTTTTTATGGACTGGTCTACAGTTAAATTCTTTAT
GGCAATTTTCTAAGCTTTTGTTtaattcccttttttaggatGGAATGTAC
GAATTCTTTTACCAGCCTACACTCAACAATAATAGTGTGTTTCCTTCAGA
TAAACTCCAACAATTAAATGAGTGGAAAATCGCCATTTCCAATGCAGTGA
AACCTGAAAAGGCTGCTCGTTTTGCACTGGGATTTTTCATATTCTTAGCT
TTGTTACTAATAACATTCTTTAAAAGCACATCAACAGAGTGCAAATCTGG
AGGCGTTAGAAGCAAGTTTAGTATTTATAGAGACTGTTAAGTAGTGATTT
TGAGCCATCTGAGTTATTAGAGTTATCGAATTAGGAATATTCCTTTTCTT
GAATGAGAATCACAGAAGGAGATCAAACTTGTTGCAAAATGGCGATCAAT
TTCCATGTTGTTATTGGCTCTTTGCTTGTTAGATAATTCATAATTATTTC
TGGTAAATTGGAAACGAACATTCTTACAGGTAAAGAATGCACTTTTCTTA
AACAAGATGCACACCGGGAAAAAGATTTACCGTGGCACTTTGGATGAATT
TCAAGGTGAAAAGCTgcattcttttcttttgataattctcaatcccgggg
gggggggcactcgatttcgaaacgacggtatgtgtcgcgcaaaatctgct
tttcaaaatcgtaccctaacagtgcagttcaatatggctgaaaaggtacc
ctttcagtgcattttctcttgatttaccagcccttatagtgcactatatt
tctcagctgtaaatctgcgtgaaagaagaagcttgggaaattttctgttt
caaagaaaaattgagaaaattattcttgacAGCTGTAATTATAAgacaat
agaaaatttttcaaacaaacgagaagtaaaaacctttctttttaacaatt
attaatttgttttaaaattcgac Coding sequence (CDS) from alignment at sc0000087_pilon:1225720..1229492+ >MSTRG.11883.5.p1 ID=MSTRG.11883.5.p1|Name=MSTRG.11883.5.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=2367bp|location=Sequence derived from alignment at sc0000087_pilon:1225720..1229492+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGGTTGCCACAAAGAAATCACAAACTACACTCTGGATTTATTTGTATCG
TTGTTCGAAACTCGGGCCTCGTTCTTTATGGATCAAACAATCGAATTGTG
TCTTAGAAGAACTAACCAGAACGATATGCGATAAAGCGATTCGTCATCGA
ATGACAAAAGCCTCTATCGATCATTCTCCGATCAAAAGTCCGAAACTTTA
CGAAACGCCGTCCGAGAAAACAATGCAATGCGTAAAAGATATGATTGATT
TGATAGTCTCTTCACATCCGGAACTCTATACGGAAATCACATTCAAGTTA
AACATACCGGTTCAAGACGAGCGGACTGTATGTAGAACGTATAGtgaGTT
TGCTGAGAATCTGTTCAAGCGAGGAGTTTCATGGCCGCTCATCATTTCAC
TGTTGTCGTTTTCCGGAAGTCTAGCAGCGGAGTGTACGCGGAACGGGCGG
AGTATTTTAGTACGACGTATTTGCGATTGGGCAACGTTATTTATCGTGAT
GAGACTGAAAGATTGGATACAAGATAATGGCGGATGGgatGGAATGTACG
AATTCTTTTACCAGCCTACACTCAACAATAATAGTGTGTTTCCTTCAGAT
AAACTCCAACAATTAAATGAGTGGAAAATCGCCATTTCCAATGCAGTGAA
ACCTGAAAAGGCTGCTCGTTTTGCACTGGGATTTTTCATATTCTTAGCTT
TGTTACTAATAACATTCTTTAAAAGCACATCAACAGAGTGCAAATCTGGA
GGCGTTAGAAGCAAGTTTAGTATTTATAGAGACTGTTAAATGGTTGCCAC
AAAGAAATCACAAACTACACTCTGGATTTATTTGTATCGTTGTTCGAAAC
TCGGGCCTCGTTCTTTATGGATCAAACAATCGAATTGTGTCTTAGAAGAA
CTAACCAGAACGATATGCGATAAAGCGATTCGTCATCGAATGACAAAAGC
CTCTATCGATCATTCTCCGATCAAAAGTCCGAAACTTTACGAAACGCCGT
CCGAGAAAACAATGCAATGCGTAAAAGATATGATTGATTTGATAGTCTCT
TCACATCCGGAACTCTATACGGAAATCACATTCAAGTTAAACATACCGGT
TCAAGACGAGCGGACTGTATGTAGAACGTATAGtgaGTTTGCTGAGAATC
TGTTCAAGCGAGGAGTTTCATGGCCGCTCATCATTTCACTGTTGTCGTTT
TCCGGAAGTCTAGCAGCGGAGTGTACGCGGAACGGGCGGAGTATTTTAGT
ACGACGTATTTGCGATTGGGCAACGTTATTTATCGTGATGAGACTGAAAG
ATTGGATACAAGATAATGGCGGATGGgatGGAATGTACGAATTCTTTTAC
CAGCCTACACTCAACAATAATAGTGTGTTTCCTTCAGATAAACTCCAACA
ATTAAATGAGTGGAAAATCGCCATTTCCAATGCAGTGAAACCTGAAAAGG
CTGCTCGTTTTGCACTGGGATTTTTCATATTCTTAGCTTTGTTACTAATA
ACATTCTTTAAAAGCACATCAACAGAGTGCAAATCTGGAGGCGTTAGAAG
CAAGTTTAGTATTTATAGAGACTGTTAAATGGTTGCCACAAAGAAATCAC
AAACTACACTCTGGATTTATTTGTATCGTTGTTCGAAACTCGGGCCTCGT
TCTTTATGGATCAAACAATCGAATTGTGTCTTAGAAGAACTAACCAGAAC
GATATGCGATAAAGCGATTCGTCATCGAATGACAAAAGCCTCTATCGATC
ATTCTCCGATCAAAAGTCCGAAACTTTACGAAACGCCGTCCGAGAAAACA
ATGCAATGCGTAAAAGATATGATTGATTTGATAGTCTCTTCACATCCGGA
ACTCTATACGGAAATCACATTCAAGTTAAACATACCGGTTCAAGACGAGC
GGACTGTATGTAGAACGTATAGtgaGTTTGCTGAGAATCTGTTCAAGCGA
GGAGTTTCATGGCCGCTCATCATTTCACTGTTGTCGTTTTCCGGAAGTCT
AGCAGCGGAGTGTACGCGGAACGGGCGGAGTATTTTAGTACGACGTATTT
GCGATTGGGCAACGTTATTTATCGTGATGAGACTGAAAGATTGGATACAA
GATAATGGCGGATGGgatGGAATGTACGAATTCTTTTACCAGCCTACACT
CAACAATAATAGTGTGTTTCCTTCAGATAAACTCCAACAATTAAATGAGT
GGAAAATCGCCATTTCCAATGCAGTGAAACCTGAAAAGGCTGCTCGTTTT
GCACTGGGATTTTTCATATTCTTAGCTTTGTTACTAATAACATTCTTTAA
AAGCACATCAACAGAGTGCAAATCTGGAGGCGTTAGAAGCAAGTTTAGTA
TTTATAGAGACTGTTAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000087_pilon | genome | sc0000087_pilon:1225720..1229492 + |
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