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Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000021_pilon:376469..380502+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >XLOC_045690 ID=XLOC_045690|Name=XLOC_045690|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=4034bp|location=Sequence derived from alignment at sc0000021_pilon:376469..380502+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGACTGGTTTGTGGTTGTCAATCATTTGTATCTCGTATTTGTCGATTGC
CGTCCAAGCTGAAACAACTGGTAATTATCTTGAatatatacacccctgtc
tcaaagcaCCGGTGGAACTTTGTTCCTCAGTGGTGATGAAAATTCCTggg
gatataaattctattgttccaaggatAAAACatccagtggggatgatttT
AGACTgcagtttttaaacattgattttcggatggggatgaaatcaaagta
agcAATGACTTTAAGTTTGAAACTATCTATTTACAAAGCAAAGGTTACGA
TCTACAATCGGAAAATCCTCCAGACAAGAAAAAGTAATTTACATTTTCGA
CTGTTAGTTTATtgtacaaaagaagaaaaaagcctTATTTAAATCGTTCA
CTGTTTTAGATGCAAGAGCCGGGGGTGAAGATTTTTCGATCGAATGTGAT
ACCGAAAAGATGACGATTTATATTCTTAAAGACGAAATTTCAATTCCTGA
AAGCGATATTTCCAAATACAACATCTCATGGAATGATCCTACTTGTGGAC
CAAGTGAACAATCAAATGAAACATATTTGGTTTTGGAGGCTGGTTATTCG
TCTTGTGGAACCAAAGCTGTTGTTGAAGGCGATCATGTTATATTCAAGAA
TAAGGTAAATTAAGTAAGATTGTTGATGTTTTTATTCGGCATTGGAAATA
GTCGTGATTAGGGACACTCGATACAACTGAGAGCATGTTTCGAAGCTATG
ACACTAAAATTCTTTTTACAGTATAtagcccccaaaacggaggctgcccc
caaaacggagcttttcattaaaattaagattctgacttgtagatttatca
gaattaaacgatttttgtatattttgaaagaatgatggttatacttaaaa
atgagcatgtttttgctggtttgagacagattcaaaataacatatttgcg
tctaaaggaaatattttaacaccaaaatgagacaaaaattgcatataact
cactctagctccttggatattgaaaataagttatgaaaacggggtatagg
aaactttctacacctaatgccgttcagaaaatgcaaatacatctgtgact
ttagaggctgggtaaaagatatagcatcttgaaggtcaaccagtattttg
gagccctagaatcagcattgacaaaaccgaaaattctaaatatgagaaaa
agcaaaaagtcttggaattctattcctatcaccttgagttagtagtttat
aacaaaattaacattatatataaaaatttttgctgaatcggcaaaaacgg
caaattctgtcatttttttgcaaaatataggagaaaaatatctttaaagc
ttaatattttcagtttcagttaagctttttttctaaaattttcacagctt
attccatacatgaatggaactattttcaaaagagatttgttttcaaaaac
ttgattaagacgttgttaaatcaaaattgtcattttaaaaatttctaaat
tttcagtttggactttgcaatatcgaaaatcttaaaatatttcataaaag
tcataaattttaaatccatcgggtcgtaaatttaagggaaaacacaaata
tgttcaagTTTTCCACCCCTATTAcaactgggcttaataatttgatttta
actacacctccgttttgggggccccaaacctgcattttgacaaccagggg
tatactgtgaagattttatcaaataaatttatgcccaaaaccctctaaat
catatttcaaaactatggtcaaaattttgtattcatatcttaaagatatc
ttgaGAAATTTTTAAGCGATTGAAGAATAttgtttaaattgaaaattttg
aaaaagaacttccaggaaataaagtagagatgttaaaggtgttcatgcag
caaaattttttgtaaaatctcttttcctctagatttgagagaaatttcaa
atttgatcgccgttttgggggtcACATACTGTAGAGAaaattacaccccc
ttctcacaaacgtAGTAGGAATTTTTACCCATTGGAGTTAGAAATtacgt
ttctttataagaacatatataAGGACATTTATATAAGAGCATAGGgattc
gatagccaaaatgttaagaacaagttaggaatatttttaggtttaaatct
gaaaaacttaaaacgggcttcaaaaactttggatgttcttataaaaaaac
gtgtaggaatTTATACTAATTCTATGCTTATAATAAtgTgaTaaatttct
tttacCAGGTATCCATCAATTTGAACAAAACAAACGCATATCAAAATGAT
CTATTGGAAAGGATTGATACCTTCGCCACATATTCCGTTGAATGCAATAT
TCCACAAGGTGTGAATGTAACACATGAAAATGGAGTGAATATTACCAAAA
CAGCAGATTTGGTTGAAGGTGTATCAAGTAAGTTAAAGATATCAGCAATT
AAAAATTTCTATGAAACAACTTACATGGGACATAACGCAGCATGCCACAT
AAATCATATTAGTGGAGAAATCTTATAATTTTCTCATTTTACTGAGAACT
TAAGAACAAATTGAGATTAGTTTCAGACTCAAATCTCGGAAATAGCCAAA
AGAATACTGAAGCAAGTAAGTTTatagactaaaaatattttcgatataAA
GCCCACtttggtttttgaaaattaagGTTGGTCGAATTCTCCATAATTTT
GTGTACAGGTTGATGCATTCTGAAAATGATGGTATTTTACTATATCTACT
TTATCTTTCTAGGTTCGACTGACGAATTCACTGTCTCGATAAATCTCCAT
AAATCatcaaatttcaatgaaagtctTACATATCCTGCAGTTATTGATAG
ATTGGGACGTTTTAATTTGGAACTTGAAATTGACACTGTTGCAAATTTGT
ATATTATTCCACGAGATTGTCATGGTACTTCTACATCTGATCGAGATGAC
GTCATTCGGGAAGCTATTGTCACTGACGGGTAATTCTTTTTGATTACATT
TTCATTCTCAATCTTTAAATTCTGCTCTATTGAATAATGCAGGTTCCATA
TGATTTGACCATGATTGATAAAAAATCACTCGCCGTATTGAACATTTCAT
CAAAACTTGTCATTTATACCCTAATAAGCGATAGGGAGATATGTGGTGAA
AAATTAGGTAGCTAGATTTCAGCATATGGCTTGAATCTTTACCCGTAACa
ttaatacaattttttgccatttcttactttctaaataaacaaacttgACA
ATTTCAACACTGTTTTAGATGTCCCAATACTGACCACGTTTTCAAGGAAG
AGTCTACCGCTGACAATGGAAAGAAATTCCGATTTTCATTGAACGTATTC
CGATTCAAAAACTCGAACGGTATGGTCTACATTCATTGCTCTGCTCACGT
CTGTTTGGAAGGAAGTAATACCACAGAATGTCAATTCGGTTGTGAACAAA
ACAGCAGACGACGAAGACGTTCAGTGGAGGAGAATGCATTGACACTAAAT
GATGATCTTTCCAAAGATTATGACATTCGAACTGGATTGATTATCGTAAC
AGAAAATTCTAAAAGTAAGTTCCTGAAAATTTATGCTAGAAGTACTTTGG
ATAAGCAATGCTAAGCTGtctctttttaacaatttccaTAAAACTTTAGA
AAACAGATTGTATCTACTTATTATGATCGAGTTGTGGAAATTATTACGGT
ATAAACATGAATGGTACAAAATTATAATAATTCTAGGCtcaatataaaaa
cattttcattaggaaatttaaaataaaagagcTATCGTCAGTTACCACAT
TTCCAAATTTGTATTATCTTTCTAGATGACGACTCATTCCAACAAGACAC
CCAAGAATCACCCAACAATACTCAATTCTTTCAAACCACGACCAATATCA
TTCTCATTGCAATCATCTTGGTAATGTTGACTTTAGTATGTTCTCTCTTG
GTTTTTGTTGGCTTACGTCGCCGTCGAAGTGGTTCAAAAAGATATAGTGT
CCCTGGATCTCCTTCGAAGATGGAAATGCATTAA Coding sequence (CDS) from alignment at sc0000021_pilon:376469..380502+ >XLOC_045690 ID=XLOC_045690|Name=XLOC_045690|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=2412bp|location=Sequence derived from alignment at sc0000021_pilon:376469..380502+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGACTGGTTTGTGGTTGTCAATCATTTGTATCTCGTATTTGTCGATTGC
CGTCCAAGCTGAAACAACTGATGACTGGTTTGTGGTTGTCAATCATTTGT
ATCTCGTATTTGTCGATTGCCGTCCAAGCTGAAACAACTGATGCAAGAGC
CGGGGGTGAAGATTTTTCGATCGAATGTGATACCGAAAAGATGACGATTT
ATATTCTTAAAGACGAAATTTCAATTCCTGAAAGCGATATTTCCAAATAC
AACATCTCATGGAATGATCCTACTTGTGGACCAAGTGAACAATCAAATGA
AACATATTTGGTTTTGGAGGCTGGTTATTCGTCTTGTGGAACCAAAGCTG
TTGTTGAAGGCGATCATGTTATATTCAAGAATAAGATGCAAGAGCCGGGG
GTGAAGATTTTTCGATCGAATGTGATACCGAAAAGATGACGATTTATATT
CTTAAAGACGAAATTTCAATTCCTGAAAGCGATATTTCCAAATACAACAT
CTCATGGAATGATCCTACTTGTGGACCAAGTGAACAATCAAATGAAACAT
ATTTGGTTTTGGAGGCTGGTTATTCGTCTTGTGGAACCAAAGCTGTTGTT
GAAGGCGATCATGTTATATTCAAGAATAAGGTATCCATCAATTTGAACAA
AACAAACGCATATCAAAATGATCTATTGGAAAGGATTGATACCTTCGCCA
CATATTCCGTTGAATGCAATATTCCACAAGGTGTGAATGTAACACATGAA
AATGGAGTGAATATTACCAAAACAGCAGATTTGGTTGAAGGTGTATCAAG
TATCCATCAATTTGAACAAAACAAACGCATATCAAAATGATCTATTGGAA
AGGATTGATACCTTCGCCACATATTCCGTTGAATGCAATATTCCACAAGG
TGTGAATGTAACACATGAAAATGGAGTGAATATTACCAAAACAGCAGATT
TGGTTGAAGGTGTATCAAGTTCGACTGACGAATTCACTGTCTCGATAAAT
CTCCATAAATCatcaaatttcaatgaaagtctTACATATCCTGCAGTTAT
TGATAGATTGGGACGTTTTAATTTGGAACTTGAAATTGACACTGTTGCAA
ATTTGTATATTATTCCACGAGATTGTCATGGTACTTCTACATCTGATCGA
GATGACGTCATTCGGGAAGCTATTGTCACTGACGGGTTCGACTGACGAAT
TCACTGTCTCGATAAATCTCCATAAATCatcaaatttcaatgaaagtctT
ACATATCCTGCAGTTATTGATAGATTGGGACGTTTTAATTTGGAACTTGA
AATTGACACTGTTGCAAATTTGTATATTATTCCACGAGATTGTCATGGTA
CTTCTACATCTGATCGAGATGACGTCATTCGGGAAGCTATTGTCACTGAC
GGATGTCCCAATACTGACCACGTTTTCAAGGAAGAGTCTACCGCTGACAA
TGGAAAGAAATTCCGATTTTCATTGAACGTATTCCGATTCAAAAACTCGA
ACGGTATGGTCTACATTCATTGCTCTGCTCACGTCTGTTTGGAAGGAAGT
AATACCACAGAATGTCAATTCGGTTGTGAACAAAACAGCAGACGACGAAG
ACGTTCAGTGGAGGAGAATGCATTGACACTAAATGATGATCTTTCCAAAG
ATTATGACATTCGAACTGGATTGATTATCGTAACAGAAAATTCTAAAAAT
GTCCCAATACTGACCACGTTTTCAAGGAAGAGTCTACCGCTGACAATGGA
AAGAAATTCCGATTTTCATTGAACGTATTCCGATTCAAAAACTCGAACGG
TATGGTCTACATTCATTGCTCTGCTCACGTCTGTTTGGAAGGAAGTAATA
CCACAGAATGTCAATTCGGTTGTGAACAAAACAGCAGACGACGAAGACGT
TCAGTGGAGGAGAATGCATTGACACTAAATGATGATCTTTCCAAAGATTA
TGACATTCGAACTGGATTGATTATCGTAACAGAAAATTCTAAAAATGACG
ACTCATTCCAACAAGACACCCAAGAATCACCCAACAATACTCAATTCTTT
CAAACCACGACCAATATCATTCTCATTGCAATCATCTTGGTAATGTTGAC
TTTAGTATGTTCTCTCTTGGTTTTTGTTGGCTTACGTCGCCGTCGAAGTG
GTTCAAAAAGATATAGTGTCCCTGGATCTCCTTCGAAGATGGAAATGCAT
TAAATGACGACTCATTCCAACAAGACACCCAAGAATCACCCAACAATACT
CAATTCTTTCAAACCACGACCAATATCATTCTCATTGCAATCATCTTGGT
AATGTTGACTTTAGTATGTTCTCTCTTGGTTTTTGTTGGCTTACGTCGCC
GTCGAAGTGGTTCAAAAAGATATAGTGTCCCTGGATCTCCTTCGAAGATG
GAAATGCATTAA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000021_pilon | genome | sc0000021_pilon:376469..380502 + |
Properties
| Property Name | Value |
|---|
| Aaloc | 1000-1206:3828 |
| Aaloc | 703-996:3270 |
| Aaloc | 487-699:2765 |
| Aaloc | 316-483:2259 |
| Aaloc | 73-315:412 |
| Aaloc | 1-69:1 |
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