XLOC_045236 (mRNA) -

Overview
NameXLOC_045236
Unique NameXLOC_045236
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000031_pilon:633189..641454+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_045236 ID=XLOC_045236|Name=XLOC_045236|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=8266bp|location=Sequence derived from alignment at sc0000031_pilon:633189..641454+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGGGTGAACAGAACATCACAGACATTTCATGGCGATTTGTACAAATGAT CGTTGACAGCCGCAAGACAGATGTCCGATATTTCGATGGGTAGGTAACAC AGAATAATACAGTtaacactctctaattcgacgttaaTAAATGTGATGTT GGTATTAAGGCGTTACTCTCTTTTTAGAGAGTCTTTGCTCATTGTGGATT AATTTTgatctaattcgacgttctaccaTTCGAttcgctccattattcga taacaTTGAAAGCCAACATCGACAATAaactcgaattagagagagcatCA AGTGTACAGTCAGTCATCAGATCAAAGGACAACatactaaatttaaaaaa tatgtcCCCAATACACCTTTAGGACATTAGCCGCCAATAGCGgtcatttt tttgtctgttttaccaccctaaaaccgtcacagtttttttttcgcaccta tagacaataggtagaaaaaagtgtaaaaaaaggattggatcgagtttagg gtggtaaaacggacagaAAATGGTGgtaaaatgcccgcgcggcaattggc ggctacggttgaaaaggtgtatttaatgTGTCTGCTAGATAATAGTTTCT GAGACAGTTTAAAAAACTATAGAGAAGACAATTGGTTGCTAAAGGTTTGA AAAAGGTACGCAAAGTAGTGTTAAAGTGTTGAATATTGTCTTTCGGTTTT CTTTATCTCTATTATAATTCTTTCTGTATAAAACTGGGATTGGTTCGGCC CGATCCCTTTGCAGTATTTTAGCATTAGGTAATAACGTATCTCCTTTATA TACTAGAATTTCTGAACGAAGATATTTCCGAGAATCAAGATCCACTAGTG AGCTGACCCCTCCAGAATCATCGTTCCATTTCCAAAAGATTTACGTTGGG GGAATTCCACCAAACCTTGCAGCAAAGTCAGAAAGTCAATTCGCTGGATG TTTGGAGGATGTTGTGATTAATAATGTGAGTTTGTCTGAAATGATGAAAT TATAAAGATTGCGACCGTAGTCGCAGgatagtctggagatccatactctc tattcaaacttacaccacataagcaaaaatatattatattcattttaact aaatgctttacttcgaaaccacacgaacagagtagacggaCCCAGCTAAG TCGCATTATGATAGACTATGGTTTTTTAACGATTTTGATATCTAGCGACT TTTGTCAACCAGCTATAACCAAGTTGTAGAAGCGCTACTCTTTCGCTCTG TATTGCTACATTTACCCCAACCTTGTTCCTTGCGAATTATTATCAGCTTC TTGATGCTTAGATAACGCCAAATACTTCTCTAACGTCTActagtaacgta aataaagcctggaatacacggttGCTGAGGAACCAAAGGCCAAACCAAAT TTGTTGTGTTGTGCTTTTACAGTACTTGGTCATTTGCTCAATCAAcgaat acaagtttttttataagaacaaactatataagaaaataaggcttcgatga ccaaaatcttaagaacaagttaagaacattttaaggctttgcgggctTTG CGGGctctagaacaccgaatttcttaggaaaatggaccaaaatactcaca aaatggtgaaattaagaacatgttaagaacaattttaggcttaaaactta aaactttttgatgttcttataagaaaagaaCGTGTAGCTAATTAAagagt tttttatctttttttatccTTCCAGCTGGACTTTATGAAGCTGCACAGAA GTCGTAGTGTTAAATCATCACTGTATTCCAATGGTAACATTGATGAGCAA TGCACTAATGAAATATTCGACGAGATcaaaggtttgaaattttagattta gatcaTGTTCACACACTACGGTTCCGTTTAGCACTACACATCTCAtcttt tagaccatgttcagacctTATGGTTTTGCATCGTTccgaaactaaaaaaa aagtcaaaaaaaagacgctacaaagcaaaacagattgaaacggtttcgct ccaatATTTCCATCGGAATGGAACTGCTCCGAAACGCTCCGAAACTAATA TGAATACTCTTGATCCGTAACGGAAACCATACGGGAGCGATAAGAAGCCG TAtttctgaacatggtcttataaGCAATTTCATTATCGGGTCACCCCTCG GGCTGCTTGgtattctagctcattttctgaaaaataacgTTGACCACCCC TGATTTTATACCATAGTCACGCGTCAAGGGCTTTTGTATGCCATAGTTAG ACtatctaaaaaacttttacctTACGAAAATAGTCGGCAAATTTGAGCCC TCGAGCCTTATCAACttgattgcttataaaaaaatgtgtactaaaATTTC TCAACCACGACTGAACGATTGTGACAATaatgaaaatagtaaaaattttG CAACATTATTCGAGTAAGACAGATGGCCCAAATGCAGTAACGAATTTTGA AACAAGCTGCTTTtctcaatcctttttttttagaATGGAGTAAAGAAAGA GAAGGCCAATCTGTTTTCGAAAATAGCAATCATGTCGAAAGTGGAAGCTC CAATTTGAAATCGATGTCCGGGAAAACAAAGGTATCATTTTGCAGTTTCA GAACGTCCAAATAACATTCTGCAAATGCCCCTAACATccataaaaacttt aaaatcagcTGGACACGGTGTGAAAGgagtcaaaaaaacattttggcaAT GAAACCCTTTAGAAATTTGTTTCTGGTAAAAAGTTTTAGTATCGTGTATC TAATGTAATTTGGATAATTTGATAGCCTCAAAAATAGCTTTGAATATCTC CGAAACAACTAATTAAACGATAATCTAGGAGCCCGAAAGTTGGCCTGTCC TACCTACCTTGtcagtttttggacctaccccggtggggtagaggtcctat aaattaacctgtgttcgttcgttcgttcgtctgttaccaacttttctcag gattgaatcataggaaccccttgatttttggtacaaaggtgcaaaatggt ggtgggcaaaatgtgacggagcccgattttcaaaaaaaaaatagctaaaa aacgggttttttggactttgtgaattttttttgcataaaagtagataaaa gatggctcaagctgatttttgtaaaaaagaatttttcagctcaaaaaacg catctttatatctataagaatcactatcaataagcatacatcaatgttct tagccaaattactgaattttttgatgagatagatgtttttttttgctcac gaagtcttgaatataaaaaaatatttcaagagcatgaaattttggtttct aaacgtttttttataagaaacaaacaactaattttaatagatcgtcacta tttgtgttttgaatgattttttaatggtcacgctcacgtagatatcaatt atatatgtgttaaatgcataaccaggtaggtccataaaagtatcacttgt tttttcagaaattatttattatataattcagtttctcaaaatatcttcaa aaaatcgATCTTCCATTTCGCTTTCCAAACTCGAATCCATTTTTATCAAG AATCTAAACTCGGCTAATCTCCAAGCAGATTCtgatcggggggggggggc taatactaggtttgcgaggtgacgggtatgtccgagccaaaaatcctATA AGAGAAACAATGGGCATTTTTAGGACCCTAAGAgaaacttttctcaaaat ttttgtcgattctcactcgatttttgtccaaatttttgaaaatcacgacc ctttgagagaggaaatttcgattttcgtgagTTTAGGGTCTACCTTACAT GACTCAATTagctttttaatgtttttttttacccctttgagagactttcg agggtgtgaagcAATGgggttttgaatattttggctgaacaaccaggtTA GATAGTCACATTCGTCATATCCCTTTATAGCAGAGCGTggtatgcgcaga atggatgatctgttacaAGATTAAAACTCTGCTGGTACGCAACGTAGCCT ACGGTtctaacgttagataaacggcTCACTTTTGGTCCTGCTTATTCTAA TTGTGAGTTAAAGTGAGCAAAAAATTAGCTGTCCAAAGTCAATGCATTgg cctcttttgacgtcaatgcaatgtcttcttccAATCTACTCCAAGCAAAT GTTTTAATTACCAACTTATtgcccactttttgcctactgtaataattaga ataggcagggcgaaaaatgggccgtctaaactagagcatAAACTTTGCTT TGACGTTTAGTGCCAAAACAAGTGATCTCtatacacgcttttcttttgtc atctaGTACGAAGATTCAGCGAACTCAAGCATGTGGATCATCATCGGCGC ATGCGTGGGAATTGTTGTCACCACTGCTGTCGTCATCATTGTCATTCGCG TTCGCAAAAATCGCCGACGAAACGCGCGAAGGTATGCCTTATTCtagtct gttttatttacctaTACAATTGACGCtttctaattcaatttttaagggaa attgcattttcatattttcattgaataagaGAGCAtattgaatagtagag cgtcaGTTTTGGAGAGTTTCTTGTTTACGGTGACTTTATCGAATAgcgga gcgtatcgaataatagaacgtcgaattagagagcgtcaacagTACTTTCT TTTGAATACACATTTCTCGACATAAATCAGGATCTCCTtgggcctcgttt tcaaattgaATAATCACTTCAAACGACATTTACACATGATATATGTATTC CTAAATGaccgttttcaattttgatacaaaaatgCAAACACTAGAAAACA TTAATCTTGTCTGACGACGTTAAAGTACCCGGCATCATAATATTCAGCAA CTAACATAGCATCTGACGAGGATTTACTACACAGATAAATCACCAAGACC ACAATAACAATCTTATCTTCAAGAATTTATCTTTCATGTAACTAATGTTT CAGAAATCCCAAATATTTTCCTCGCATTTTggcagatttttcaaaattta tttaaaacattCATTTGTTCATTCGAaggattttaaaatatttaagcTCA TTTCTTCTACAGAAATTAATCCTGTAAtccttctttataagaataaagaa tatctttagaATTAAGTGACtggctttttttcaaatttagacaggaaaaa attatgaaatttttaggCAATTGAAGAAGTTTTCCCCAATGAAAACTTTT ATAGCCTTCTTCAATAGGGCTGTGACGAAGTTTTCCCTCAAAAAGTTTTC GCCGACAAAGTTTTCTCcttaaggcgaaaataaaataatgtagtgtttcc ggaaaccagacgggtgaaaaaaaaattctgacccGCCGGCCAAATacttc gttagtagttgataaattagtattcagggcttacttcatactgtttatAC ATGAAATTTATCtataaagttctatttcaattatcttaagttatcaaaaa tagcagagaaaattttttttctagccggccgcatgagagcttttctcctt cacccgcattctggaaacactacatttttttattttcgcctaaggTAGAC TTTTTCTGTTAAACAACTTACCTTTAAATTGTAGCTCTTTCTTAAAATGT GATAAACCAGACTCAAACCCCTTTTTTGTTGAGTCAAAACGTCTATGTAC CAAAAAGCAGGATATGATTAAAGAGATCTTAGTATCGTATAAAAACTCTA TCCACCAACATTCTTATTGATGTAAAGCGCTATTATAAACGACTCCGATC CATTTTCTgatcgaaaaaaaatccaagaaattattttccttCCGTTAAAT TTCGAAATCTGATTTAGGTTAGCTATCAAAACTACTAAAGATATTGCTTT CTCCAAAAtcctaaaaacatcaaaaacacatCAATTATCCATTTTACAGT GCTTTTCGTGGAAAAAATTATGAACTAAACGATACTTTCGGTAGATAATA CGTTTTTCTTGGAAGAACACACAAAGTTTCGATACttccggatgttctta acttatttaGTTGTAAGCCAaaatatgttcttaaaatattcttaatttca ccaaTTTGTAAGTGTTTTTGGGATTTCctaaaaaattgtgttttataGTC CATGAAGACCTAAAAAATATtcgtaacttgttcttaataactTGCACTTC GAAGTCTCTTGTTCttctatagtttgtttttagaaaaatacgTGTACCGT CTGAGAAATACTTAAAGATGTTTTTCCTTTTGTGAGGGTGGTTCTTCTGT ATTGAGATCTATCTGTTGGGATTATGAAATCATTTTAATTGAAGATCGCT TTACGAGATCTGTAAAGTAAATCAGTAATTTACTCCTAACCCTCTATGTA tttaccataatttttttccacgaaacgagaatatttttgaagaactTGAA AACGACTAGGCACACACTAAGTAAAACGACTTATGCAATACTTGAGAAAA CGTACAGTTATTATATCGAGCTATCTCCTTGATGATACCCTTATTATGTA CGGGAACCCAAAGTCCTCACTTCCTTCCAttatctcaaaaaaaaaactct aagcaaaaaaagaaaagtttaaaaattcttATCATTACTCAAATCAGAGA CCTCTCAGTGGAGTCACGCCATCACACCGAAATGTTTTTCTTATCAATCG CGCATCATGCGTTTTGAAATCATAGAACACGTCATCACGCTCAAAAAATG CCTAATCAAGCCATCACGCAATCACACAAACCGCTTGGGGGTCATATTAG TTCGAATGATTTAGATAGAGAAATGATACTAGAGAAATTAAAGGTTTCCA GGTCTTAATTTAACTCATTAGTGACTGGGAAACAAGAAAATGGATGCAAA GTTGAGTCGTTTGACTCTGATGGAATATATTCTGTAGTATTCTATACAAG TGTGGCGGAAATATTGGAGTCACTCCTAGAGGAAGTAAGTTCATGGTGTA GTATACCCTTAATTCAGAGGGCGTATACCAGAGGCGGCATAGCCTTAAAA CAGAGGGCGTATACTAGAGTCTCTGTACAAAAGGCAAGACAGGTGGTGTG AACATCTTAGGTCCTAAGAGAATCTAGACGTCACAATCAAGTGACCAACC GCCAAACCTGTCACTATCAGTATTCTAAGGAATGCGAAAGCGGAAACCGT CAAGGGTACAACGAAGGGAACCGTTTGTCAGTAAACTAAACAAGGCCTTA AGTGGAGTGTATGGTGAAACGAACGCTTACAGTAAATGACCGTATTACCA ATAGAATAGACGAGCACACTGCTAACAGACAATACAATACAAAACAATGA CACTTGAGCAAACAGAAGATAAGTTATTAAAATTCATTCTCAAATTTGTC TTTTTTGGTTGTGGTCAGACGTAGCTTTGAAGATGAAGTTCACTATTATT GttttgtattcatgatattcattacgtaatggtTTCTATGGAAACACCCT GCCTATTACCAGTAGCgacaatttttaaacaattttttatctagCTCAAA TTTTCCACTCGTGGCAAAAACTGGGATGttttcgtagaaaacattacttc ACGAGAATCATGAATTTCACACATAATACTTGTATATTGATAGATTTCTG CTGAGTCGCAATGGCACAAATCCATGAAAGACCATAAACACAATCTAATT CACTCGACATTATTTCATTGTCCAATCCGAAATACCATAGAGACACCCAA AACAAATACTCCCATAATAATATTGTTTCTGCTTTGACCATTTTAGATAC AGTGATCACTATCTCCGTCAAACAGCCATGACCTTACAAGAGGAAGACAC ATTCCCAACAGAACAAAAATGTATCCGTGAAGAAATTGCTAAGAGACGTC TCTTAAAAACCTTCAGTCCCGTACGTAAAGAGTTTTACGTGTCCCCATCA AACGAAGGCTCGACCAGGACGATCCCACGAAATCTCAATGAACCCATCTA CCAATCACACGCTGTCTTACATCATGATCATCCGtacattggtcaaaatt ttatcaaccCATTAGCGCGGAACCATACACCTCAACAACATATCGGGACC TCGATACAGAACAACTATAGTTCGTCACCCTTCCACCATCCGTTGCCGCA ATCAGTACCGCAACAGCGCCGCCATGACAGCCAGAGCGACACAATGTGTA GCCATAATTCAACCAGGTATCAAGTTCCTGTCATGGTGAGACATGATTCG ATGAAAAGCTCCATTTCACAGCAATCGAGCTCTTTCTTTGAGAGATCTTT GACGAATGGTGAATGA

Coding sequence (CDS) from alignment at sc0000031_pilon:633189..641454+

>XLOC_045236 ID=XLOC_045236|Name=XLOC_045236|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=2214bp|location=Sequence derived from alignment at sc0000031_pilon:633189..641454+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGGGTGAACAGAACATCACAGACATTTCATGGCGATTTGTACAAATGAT
CGTTGACAGCCGCAAGACAGATGTCCGATATTTCGATGGATGGGTGAACA
GAACATCACAGACATTTCATGGCGATTTGTACAAATGATCGTTGACAGCC
GCAAGACAGATGTCCGATATTTCGATGGAATTTCTGAACGAAGATATTTC
CGAGAATCAAGATCCACTAGTGAGCTGACCCCTCCAGAATCATCGTTCCA
TTTCCAAAAGATTTACGTTGGGGGAATTCCACCAAACCTTGCAGCAAAGT
CAGAAAGTCAATTCGCTGGATGTTTGGAGGATGTTGTGATTAATAATAAT
TTCTGAACGAAGATATTTCCGAGAATCAAGATCCACTAGTGAGCTGACCC
CTCCAGAATCATCGTTCCATTTCCAAAAGATTTACGTTGGGGGAATTCCA
CCAAACCTTGCAGCAAAGTCAGAAAGTCAATTCGCTGGATGTTTGGAGGA
TGTTGTGATTAATAATCTGGACTTTATGAAGCTGCACAGAAGTCGTAGTG
TTAAATCATCACTGTATTCCAATGGTAACATTGATGAGCAATGCACTAAT
GAAATATTCGACGAGATcaaagCTGGACTTTATGAAGCTGCACAGAAGTC
GTAGTGTTAAATCATCACTGTATTCCAATGGTAACATTGATGAGCAATGC
ACTAATGAAATATTCGACGAGATcaaagaATGGAGTAAAGAAAGAGAAGG
CCAATCTGTTTTCGAAAATAGCAATCATGTCGAAAGTGGAAGCTCCAATT
TGAAATCGATGTCCGGGAAAACAAAGaATGGAGTAAAGAAAGAGAAGGCC
AATCTGTTTTCGAAAATAGCAATCATGTCGAAAGTGGAAGCTCCAATTTG
AAATCGATGTCCGGGAAAACAAAGTACGAAGATTCAGCGAACTCAAGCAT
GTGGATCATCATCGGCGCATGCGTGGGAATTGTTGTCACCACTGCTGTCG
TCATCATTGTCATTCGCGTTCGCAAAAATCGCCGACGAAACGCGCGAAGT
ACGAAGATTCAGCGAACTCAAGCATGTGGATCATCATCGGCGCATGCGTG
GGAATTGTTGTCACCACTGCTGTCGTCATCATTGTCATTCGCGTTCGCAA
AAATCGCCGACGAAACGCGCGAAGATACAGTGATCACTATCTCCGTCAAA
CAGCCATGACCTTACAAGAGGAAGACACATTCCCAACAGAACAAAAATGT
ATCCGTGAAGAAATTGCTAAGAGACGTCTCTTAAAAACCTTCAGTCCCGT
ACGTAAAGAGTTTTACGTGTCCCCATCAAACGAAGGCTCGACCAGGACGA
TCCCACGAAATCTCAATGAACCCATCTACCAATCACACGCTGTCTTACAT
CATGATCATCCGtacattggtcaaaattttatcaaccCATTAGCGCGGAA
CCATACACCTCAACAACATATCGGGACCTCGATACAGAACAACTATAGTT
CGTCACCCTTCCACCATCCGTTGCCGCAATCAGTACCGCAACAGCGCCGC
CATGACAGCCAGAGCGACACAATGTGTAGCCATAATTCAACCAGGTATCA
AGTTCCTGTCATGGTGAGACATGATTCGATGAAAAGCTCCATTTCACAGC
AATCGAGCTCTTTCTTTGAGAGATCTTTGACGAATGGTGAATGAATACAG
TGATCACTATCTCCGTCAAACAGCCATGACCTTACAAGAGGAAGACACAT
TCCCAACAGAACAAAAATGTATCCGTGAAGAAATTGCTAAGAGACGTCTC
TTAAAAACCTTCAGTCCCGTACGTAAAGAGTTTTACGTGTCCCCATCAAA
CGAAGGCTCGACCAGGACGATCCCACGAAATCTCAATGAACCCATCTACC
AATCACACGCTGTCTTACATCATGATCATCCGtacattggtcaaaatttt
atcaaccCATTAGCGCGGAACCATACACCTCAACAACATATCGGGACCTC
GATACAGAACAACTATAGTTCGTCACCCTTCCACCATCCGTTGCCGCAAT
CAGTACCGCAACAGCGCCGCCATGACAGCCAGAGCGACACAATGTGTAGC
CATAATTCAACCAGGTATCAAGTTCCTGTCATGGTGAGACATGATTCGAT
GAAAAGCTCCATTTCACAGCAATCGAGCTCTTTCTTTGAGAGATCTTTGA
CGAATGGTGAATGA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
XLOC_045236XLOC_045236-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000031_pilongenomesc0000031_pilon:633189..641454 +
Properties
Property NameValue
Aaloc589-1107:7748
Aaloc463-585:4307
Aaloc367-462:2486
Aaloc259-363:1726
Aaloc91-258:808
Aaloc1-87:1