XLOC_044564 (mRNA) -

Overview
NameXLOC_044564
Unique NameXLOC_044564
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000026_pilon:238815..242659-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_044564 ID=XLOC_044564|Name=XLOC_044564|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=3845bp|location=Sequence derived from alignment at sc0000026_pilon:238815..242659- (Clytia hemisphaerica_ch_hm2_pilon)
ATGGAGGGCAATCAACAGACTTTCAAATGCCTTTTGTGCAATCATTTTCA CGCACTTTCACTTCGCTCTCTCCTGAATCATTATCGTATTGTTCATGTCA ACCAGTCCACATTCAATGTGACATGTAATGTAGATGGATGTCCGGCCACA TTTTCACTTTATAACTCATTTTACAAGCATGTAACAAGAAAACATTATGC TGTCTATTCTCGACAACTTCTGGGGGGTAATCCACAAGCACAACATCCTG ATGCAGTTGATATAACCGAGGATAATAACCAGGGAAATTTTGATGATATT GATGCAGAAGTGGTGGAGGATACAGCAGATCAAGAAGACCAAAACAGCAG TGATGATCATCTTAATGATGATGACGATGATGATGATGATGAAGAAGATG ACGAGCCATGTCAATCACAATCATCATCATCAGAAGATGAGCAAGATCCA GAAAATAATGCAGCAAATAACTTTGAAGTAAGCCATGGTGTGCCAGATTA AACAGTATGATAAAAAAGTACTTTTTTCCAGAAAAGAGAGCATAGATCAT ATATCATGATTTTGAGAAACTCGACGTATACGGAGAGCGTGCTATTGAAT TGACACTCAACGTATATGTCGATAGCACGCTCGCTGTATAGATATTTTGC CAAAGAGAACGTTCTGTTGAATAATTATGTAGGCCAGAGTTTTTTTCTGT AGGGCTGTTTATCTATATAAGTGTCCACGCGACAAGCTAGAAAGAAGAGA TACATCATCAGGTCTCAGATTCGCAACCTAATGAGGGTATATATACTTTG TCCGCGCGGACACTTGTATTTGTAAACAGTCATAAAGAAAAAACTCAGCG TGCGTCGCTGCGGCCAATCATCCGATTTAAGGTATTTTTCATTACGTAAT TTCTGCTGGACTACATAATTATTCAACAGAACGTTTTCTTTGGCAAAATA TCTATACATCGAGTATCCCTAACTGTACTAAAGCTAGTACGTACAAAATT TTTGATATCCCTTCCCCGTGTACACATGACAATAGAATGATCTAATTTAA ACAATAGATATGCGCTTTAAAGTTCCTTTCCCCCTTCATGTGTATGTACT ATATGGATGCTATTTAATTACATCCGGGGAACTCACCACTACTTTTTGAA TGAATTTTTTCTAGTGTTTGGAATCAATTATTCCATCTGTCCATTGCCAT AGATGTACTAGCTCTTATAATTGTTTGGAGAAGTACAATGATAGGTATAT ACATCATTCAATTTTATATATTTTTTAATTTATAGGATGATCCTGAAATT TGCCTCAAGAAATCTGCTGCAATGTTCTTATTGAAATCAAAAGAGCGAAA TAAATTATCACAGGTAGGTACTTTCATGGGATAAATTTTAGTGGGAATTA ATCGCGGATGAGTTTCAGAAAAAGGAAATATTTGATTTTCATTTTTTTAA ATTTGTTTCCCAAGGGTCATTCATTTGTGTATGCAGACAAAGTTTAAAAG CCAATGCATAAAATGCCTATTGTTTATGTCATTATTTTCTGTGTGCAAGG GGAGGGTTCAATTTTTGCATAACTCTTTTTAATGGTGCGTTGTATGTATC CTCATTTCATTGAAAATAAGTTAAGAATTTTTTAAAGTGAAAATCTATTA ATCAATTTTTTTCTTCTTTACAGGCTACAATGGATAAAATCAGAGACAAT GTTTCATGTCTTGTGGTACAACATAACGCAATTTTAAAATCAAAGGTTAT TGAAGAACTTAATATTACTGAAAATGATCATATTTCACTGTTGGATGAAA TATTTGGTGATGGAAATAACATTTTTGAAGGTCTTTCAACTGAGGCCCAA CAGAAATCGTTCATTAAATCGAATTTTTCTCACGTGAAACCGATTGAGAT TATTTTGGGATCGATTTTAGTAAGGAAGCGCAAAAAGAATCAGAGGTTTG TTACACAAAAAAACGAGACAATGATGTATATTCCTATTCTTGAAACATTA GAGCAAATGCTTTCTAACAAGAAAATTTTTTCAGTAATATCAAAGCCGAC ACATCAAACTGGAAATGGCTACTTTTATGATATTTTTGATGGATCAGTGT ATACAAGTGATCAGTATTTTAAAGACCATCCTTCTGCACTTGCCATTATA CTATTTCATGATGAGGTTGAAATATGTAACCCGCTTGGAAGTGCCGCTAC CAAATACAAAATAGACATGTACTACTATTGTGTTGCTAATATCTCACCAA AATACCGATCAAGAGTCTGTGCTGTCCAACTTTTAGCAATTGTTAAAGCA TCACATGTAAAGAAGTATGGTATTAGTAAAATACTTGATCCAATAATCAA TGACTTAATTCTGCTTCATCATGGACATACTATGAATTTTAATAATGAGG AAAAAGTTGTTTTTGGAAAAGTTGTCATGTGCTTAGGAGACACGCTAGGC CAACACTTGTGGGGAGGCTTTAAGGAAGGTGTTGGTGGTGCATATCAAAA ATGCCGGCATTGTTTCTGTGACTTTCAGACCCTTCAAACAGTTTTCGATT TATCCAAAATCACACAGAGAACTGAAAAACTTTATGATGAGCATTGCTCT GAAATTGAGAACGCAACTGGTGAATTTCAAAACGATTTAAAGATAACATA TGGCATAAACCGAAGAAGTCCACTGTGTAAGCTACCCAATTTTAACATAA CTACTCAACTTCCTCAAGACATTATGCATATTCTTTTTGAAGGGACTGTC CAATATGAATTGAGACTTGTTTTGAAGGAGCTGATATATACTCAAAAGGC TGTATCTTTAGACTCTGTTAATGGATCCATTTCTAGCCATCTTTATGGTT ATTCTGAAATATCGTCCAAGCCTCCGCCCATTAGAGACTCTGTATTTGAA AATAATGCCTACAAACTTAAATTTGAAGCTGACCAAGCACGTTTGTTTTT AAGACTTTTCCCACTATTGATTTGTCCTTACGTTGGCTTTGACAATGAAT ATGTCAAACTTATTGTCGACTTAATCGAGATTTGTAAAATATTGGTATCT CCCGTTATTGGACAACAAACGATTACATTGCTCAAAGAGAGATTACCAAA GCACCTACAAGAATTCAAACGTCTATTCCCAGACAAAAATATCCTTCCAA AGCACAATTACATGCTTCATTTTATACATTCGATAGAACAGTTGGGCCCA CCAATTAGATATTCGTGTTACAGTTTTGAGGCCGCCCATAAATACTTTAA AGGATTGGCCAAGTCGCAGAATTTCAAAAATCTTCCATTTTCTCTTGCTA ACCGTCACCAGTATCTTGATACTGCAAACTATGGGGATAACTCAGAAAGG TGCTCTTCACACCCATTATTTGATAAGGAGCAGCTAAATGGAGTAGTGAA GCCACTGGATGAAAATGAAAAAGTGACATTAAGGAACAGATTTAACGAAC TCAACTATTTACCAGGTATAGATTTTGAGAAAGCAGGCTTTAAAGCAAGT TGGGTGATACGCTTTGGAACCAAGTATTGTCGAGATGCTTTCGTAGCTGT AAATGTTAATCAACAACTGTTGCCGTTATTTGGAAAAATAAAGCAAATTT ATTTGATTCGTGGCTATCTTTACTTTGAAGTGCAAGACTTTGAAACTGTT TGCTTTGATGACGATTTTCAGGCACACCAAGTAGAAGAGAAAGATGATAG CTCGATTGTCCCATATGAATCATTAATAGACTACAATGTTTTTCACTTAA AGATTTATTCAGAGTATCACTACATCCAAACCAAATATTTTCTGGGTGAT ATCATTAGATGCCGTTTAGAAGGTCGATATCCTTTACGGAAATAG

Coding sequence (CDS) from alignment at sc0000026_pilon:238815..242659-

>XLOC_044564 ID=XLOC_044564|Name=XLOC_044564|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=5454bp|location=Sequence derived from alignment at sc0000026_pilon:238815..242659- (Clytia hemisphaerica_ch_hm2_pilon)
ATGGAGGGCAATCAACAGACTTTCAAATGCCTTTTGTGCAATCATTTTCA
CGCACTTTCACTTCGCTCTCTCCTGAATCATTATCGTATTGTTCATGTCA
ACCAGTCCACATTCAATGTGACATGTAATGTAGATGGATGTCCGGCCACA
TTTTCACTTTATAACTCATTTTACAAGCATGTAACAAGAAAACATTATGC
TGTCTATTCTCGACAACTTCTGGGGGGTAATCCACAAGCACAACATCCTG
ATGCAGTTGATATAACCGAGGATAATAACCAGGGAAATTTTGATGATATT
GATGCAGAAGTGGTGGAGGATACAGCAGATCAAGAAGACCAAAACAGCAG
TGATGATCATCTTAATGATGATGACGATGATGATGATGATGAAGAAGATG
ACGAGCCATGTCAATCACAATCATCATCATCAGAAGATGAGCAAGATCCA
GAAAATAATGCAGCAAATAACTTTGAAATGGAGGGCAATCAACAGACTTT
CAAATGCCTTTTGTGCAATCATTTTCACGCACTTTCACTTCGCTCTCTCC
TGAATCATTATCGTATTGTTCATGTCAACCAGTCCACATTCAATGTGACA
TGTAATGTAGATGGATGTCCGGCCACATTTTCACTTTATAACTCATTTTA
CAAGCATGTAACAAGAAAACATTATGCTGTCTATTCTCGACAACTTCTGG
GGGGTAATCCACAAGCACAACATCCTGATGCAGTTGATATAACCGAGGAT
AATAACCAGGGAAATTTTGATGATATTGATGCAGAAGTGGTGGAGGATAC
AGCAGATCAAGAAGACCAAAACAGCAGTGATGATCATCTTAATGATGATG
ACGATGATGATGATGATGAAGAAGATGACGAGCCATGTCAATCACAATCA
TCATCATCAGAAGATGAGCAAGATCCAGAAAATAATGCAGCAAATAACTT
TGAAGATGATCCTGAAATTTGCCTCAAGAAATCTGCTGCAATGTTCTTAT
TGAAATCAAAAGAGCGAAATAAATTATCACAGGATGATCCTGAAATTTGC
CTCAAGAAATCTGCTGCAATGTTCTTATTGAAATCAAAAGAGCGAAATAA
ATTATCACAGGCTACAATGGATAAAATCAGAGACAATGTTTCATGTCTTG
TGGTACAACATAACGCAATTTTAAAATCAAAGGTTATTGAAGAACTTAAT
ATTACTGAAAATGATCATATTTCACTGTTGGATGAAATATTTGGTGATGG
AAATAACATTTTTGAAGGTCTTTCAACTGAGGCCCAACAGAAATCGTTCA
TTAAATCGAATTTTTCTCACGTGAAACCGATTGAGATTATTTTGGGATCG
ATTTTAGTAAGGAAGCGCAAAAAGAATCAGAGGTTTGTTACACAAAAAAA
CGAGACAATGATGTATATTCCTATTCTTGAAACATTAGAGCAAATGCTTT
CTAACAAGAAAATTTTTTCAGTAATATCAAAGCCGACACATCAAACTGGA
AATGGCTACTTTTATGATATTTTTGATGGATCAGTGTATACAAGTGATCA
GTATTTTAAAGACCATCCTTCTGCACTTGCCATTATACTATTTCATGATG
AGGTTGAAATATGTAACCCGCTTGGAAGTGCCGCTACCAAATACAAAATA
GACATGTACTACTATTGTGTTGCTAATATCTCACCAAAATACCGATCAAG
AGTCTGTGCTGTCCAACTTTTAGCAATTGTTAAAGCATCACATGTAAAGA
AGTATGGTATTAGTAAAATACTTGATCCAATAATCAATGACTTAATTCTG
CTTCATCATGGACATACTATGAATTTTAATAATGAGGAAAAAGTTGTTTT
TGGAAAAGTTGTCATGTGCTTAGGAGACACGCTAGGCCAACACTTGTGGG
GAGGCTTTAAGGAAGGTGTTGGTGGTGCATATCAAAAATGCCGGCATTGT
TTCTGTGACTTTCAGACCCTTCAAACAGTTTTCGATTTATCCAAAATCAC
ACAGAGAACTGAAAAACTTTATGATGAGCATTGCTCTGAAATTGAGAACG
CAACTGGTGAATTTCAAAACGATTTAAAGATAACATATGGCATAAACCGA
AGAAGTCCACTGTGTAAGCTACCCAATTTTAACATAACTACTCAACTTCC
TCAAGACATTATGCATATTCTTTTTGAAGGGACTGTCCAATATGAATTGA
GACTTGTTTTGAAGGAGCTGATATATACTCAAAAGGCTGTATCTTTAGAC
TCTGTTAATGGATCCATTTCTAGCCATCTTTATGGTTATTCTGAAATATC
GTCCAAGCCTCCGCCCATTAGAGACTCTGTATTTGAAAATAATGCCTACA
AACTTAAATTTGAAGCTGACCAAGCACGTTTGTTTTTAAGACTTTTCCCA
CTATTGATTTGTCCTTACGTTGGCTTTGACAATGAATATGTCAAACTTAT
TGTCGACTTAATCGAGATTTGTAAAATATTGGTATCTCCCGTTATTGGAC
AACAAACGATTACATTGCTCAAAGAGAGATTACCAAAGCACCTACAAGAA
TTCAAACGTCTATTCCCAGACAAAAATATCCTTCCAAAGCACAATTACAT
GCTTCATTTTATACATTCGATAGAACAGTTGGGCCCACCAATTAGATATT
CGTGTTACAGTTTTGAGGCCGCCCATAAATACTTTAAAGGATTGGCCAAG
TCGCAGAATTTCAAAAATCTTCCATTTTCTCTTGCTAACCGTCACCAGTA
TCTTGATACTGCAAACTATGGGGATAACTCAGAAAGGTGCTCTTCACACC
CATTATTTGATAAGGAGCAGCTAAATGGAGTAGTGAAGCCACTGGATGAA
AATGAAAAAGTGACATTAAGGAACAGATTTAACGAACTCAACTATTTACC
AGGTATAGATTTTGAGAAAGCAGGCTTTAAAGCAAGTTGGGTGATACGCT
TTGGAACCAAGTATTGTCGAGATGCTTTCGTAGCTGTAAATGTTAATCAA
CAACTGTTGCCGTTATTTGGAAAAATAAAGCAAATTTATTTGATTCGTGG
CTATCTTTACTTTGAAGTGCAAGACTTTGAAACTGTTTGCTTTGATGACG
ATTTTCAGGCACACCAAGTAGAAGAGAAAGATGATAGCTCGATTGTCCCA
TATGAATCATTAATAGACTACAATGTTTTTCACTTAAAGATTTATTCAGA
GTATCACTACATCCAAACCAAATATTTTCTGGGTGATATCATTAGATGCC
GTTTAGAAGGTCGATATCCTTTACGGAAATAGGCTACAATGGATAAAATC
AGAGACAATGTTTCATGTCTTGTGGTACAACATAACGCAATTTTAAAATC
AAAGGTTATTGAAGAACTTAATATTACTGAAAATGATCATATTTCACTGT
TGGATGAAATATTTGGTGATGGAAATAACATTTTTGAAGGTCTTTCAACT
GAGGCCCAACAGAAATCGTTCATTAAATCGAATTTTTCTCACGTGAAACC
GATTGAGATTATTTTGGGATCGATTTTAGTAAGGAAGCGCAAAAAGAATC
AGAGGTTTGTTACACAAAAAAACGAGACAATGATGTATATTCCTATTCTT
GAAACATTAGAGCAAATGCTTTCTAACAAGAAAATTTTTTCAGTAATATC
AAAGCCGACACATCAAACTGGAAATGGCTACTTTTATGATATTTTTGATG
GATCAGTGTATACAAGTGATCAGTATTTTAAAGACCATCCTTCTGCACTT
GCCATTATACTATTTCATGATGAGGTTGAAATATGTAACCCGCTTGGAAG
TGCCGCTACCAAATACAAAATAGACATGTACTACTATTGTGTTGCTAATA
TCTCACCAAAATACCGATCAAGAGTCTGTGCTGTCCAACTTTTAGCAATT
GTTAAAGCATCACATGTAAAGAAGTATGGTATTAGTAAAATACTTGATCC
AATAATCAATGACTTAATTCTGCTTCATCATGGACATACTATGAATTTTA
ATAATGAGGAAAAAGTTGTTTTTGGAAAAGTTGTCATGTGCTTAGGAGAC
ACGCTAGGCCAACACTTGTGGGGAGGCTTTAAGGAAGGTGTTGGTGGTGC
ATATCAAAAATGCCGGCATTGTTTCTGTGACTTTCAGACCCTTCAAACAG
TTTTCGATTTATCCAAAATCACACAGAGAACTGAAAAACTTTATGATGAG
CATTGCTCTGAAATTGAGAACGCAACTGGTGAATTTCAAAACGATTTAAA
GATAACATATGGCATAAACCGAAGAAGTCCACTGTGTAAGCTACCCAATT
TTAACATAACTACTCAACTTCCTCAAGACATTATGCATATTCTTTTTGAA
GGGACTGTCCAATATGAATTGAGACTTGTTTTGAAGGAGCTGATATATAC
TCAAAAGGCTGTATCTTTAGACTCTGTTAATGGATCCATTTCTAGCCATC
TTTATGGTTATTCTGAAATATCGTCCAAGCCTCCGCCCATTAGAGACTCT
GTATTTGAAAATAATGCCTACAAACTTAAATTTGAAGCTGACCAAGCACG
TTTGTTTTTAAGACTTTTCCCACTATTGATTTGTCCTTACGTTGGCTTTG
ACAATGAATATGTCAAACTTATTGTCGACTTAATCGAGATTTGTAAAATA
TTGGTATCTCCCGTTATTGGACAACAAACGATTACATTGCTCAAAGAGAG
ATTACCAAAGCACCTACAAGAATTCAAACGTCTATTCCCAGACAAAAATA
TCCTTCCAAAGCACAATTACATGCTTCATTTTATACATTCGATAGAACAG
TTGGGCCCACCAATTAGATATTCGTGTTACAGTTTTGAGGCCGCCCATAA
ATACTTTAAAGGATTGGCCAAGTCGCAGAATTTCAAAAATCTTCCATTTT
CTCTTGCTAACCGTCACCAGTATCTTGATACTGCAAACTATGGGGATAAC
TCAGAAAGGTGCTCTTCACACCCATTATTTGATAAGGAGCAGCTAAATGG
AGTAGTGAAGCCACTGGATGAAAATGAAAAAGTGACATTAAGGAACAGAT
TTAACGAACTCAACTATTTACCAGGTATAGATTTTGAGAAAGCAGGCTTT
AAAGCAAGTTGGGTGATACGCTTTGGAACCAAGTATTGTCGAGATGCTTT
CGTAGCTGTAAATGTTAATCAACAACTGTTGCCGTTATTTGGAAAAATAA
AGCAAATTTATTTGATTCGTGGCTATCTTTACTTTGAAGTGCAAGACTTT
GAAACTGTTTGCTTTGATGACGATTTTCAGGCACACCAAGTAGAAGAGAA
AGATGATAGCTCGATTGTCCCATATGAATCATTAATAGACTACAATGTTT
TTCACTTAAAGATTTATTCAGAGTATCACTACATCCAAACCAAATATTTT
CTGGGTGATATCATTAGATGCCGTTTAGAAGGTCGATATCCTTTACGGAA
ATAG
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
XLOC_044564XLOC_044564-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000026_pilongenomesc0000026_pilon:238815..242659 -
Properties
Property NameValue
Aaloc556-2727:2173
Aaloc478-555:2561
Aaloc1-477:3846