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Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000187_pilon:528696..532184+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >XLOC_044326 ID=XLOC_044326|Name=XLOC_044326|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=3489bp|location=Sequence derived from alignment at sc0000187_pilon:528696..532184+ (Clytia hemisphaerica_ch_hm2_pilon)
CTCCATCATCAGACTGGACATCATCACCACAGACTGTCGCGACGAGACCA
GCGTGATCATCAGCAGATCGTGAGTCGGGAACGAACCTTCATCACACTTT
ATGATTATGATCCTTACACTATGGGAACTACTGATCGACCTGATCTTCAA
CTCTCTCTAAAGAAAGGAGAGGTCATCACAGTTCTGGGTGAAGTGGATAT
TGAAGGATATTTCACAGCTGTCATCAATggtaaagtttgaaaatgttttt
tttctatattctATTTGGCTCTGCTCTCTCGAACACGATGTTCAATATAC
TGTAAtgtcaaaaaaaacatacctaCCGCGTTATATGGATTTAATCTTGG
TAACTTCTTCACAATTATGGAGTTTAGCTATCTATAACTATTTGacatct
tgaaaaaaaatcaacagtAAATATAGACTAAAGAACTTTCTATTTGGTTT
GGTCTGGATAAGTTTCTGTCAACCTTTACCTTGGCAAGTTTTCCTTAAGA
AAATTGTATTAGTAATTGCCTAAGATTTTCTacgtttttttaatcaaatt
tccCGGTTCACACTTTCTTTAGGTCGACGTGGGTTAGTCCCATCCAACTT
TGTTGAAGAATATTCACACTCTTCACATGCTGCGCACAATCATACGAGAG
AAGAACATTTCCAAGGCACTGTACAAGTTGATGGTATTTCTggtaaaaaa
catataaaattgAGCTTCCTTCAAGACCATCATGTTGAAGTTTATTTTCC
GATTTATAACGACTCtaaaaaaagcctaaaatatcaagaataaacTCCGT
TTCACAAGAATAGTACTACAAAAGGAGAGTTCTCTCGGCCCTAGTGACGa
aattgttgattttcttttacaAACCTTTTCAACGTTCTCGTCTAAAGTTG
AACTAGCACTACGGTACAAGACTGTAGcttTttaagTAGAAAAGGCTAGT
TTTTGTGAATTGAGTTgctaaaatttaaagaaattaactaAATCGACTTT
AAATCCTTTTTAGGACCGCCATATGCGCCACGTgatttgaaagtaaaaag
aGTGGTCACACGCAACGCAGTTTTGTTGAGTTGGCTTTTACCGTCCATGG
ATGACCATTACATAAGTAATGGATGCAAAGTCATCGGATATCGAGTAGGT
GTTTTGCATTTTTCTCAGCCTTTCGATACATTAATGAATGCACAGAAAGG
ATTCAACCTTCCCGATCTCACTCGTCTGCTTTTTTGCAATGATCGTATGT
ACTTGTTACAGTGGTGGTCTTCAAATTTGATAGTAGAAAATAGATAGAAG
CGTAATTCAGCAGTCGTTATTGTAATTGCGGATCTCTTTGCCTTCGCtgg
cgctctctaatttgacgttaTACCAAGGACTACTACGCCTCATTCTATTC
AATAATATAATCATAATATCGAAAGTCACTGTCAATGAGAAGCTCTCATG
AAGGACGCACTTCTTTTCGATACGATGTATTTCCTATGAATTGTTTGAGA
GTCAATGTAGTTAGTCTGTTGGTATCTTTAAGGCTTCTTTTTTAATTATA
GCTTTGGGTGAATGGTCAAAGAAAACAAGATGTGACAAACCCATCGTGTA
ACAAGGCCCTTATTGATGATGTCGATTTAGCAGGACGTGTTGAGTTCAGT
ATTCAAACGATCGGAGAAAGCGACGTGTGTTCTGAGAAATGTCACTTCGC
GATCACCGGCGCTTTGAGTACTCTTGTAAGTAATGTATATGCTCTTTGGA
AACTCATTGAAGGCTTTTCTTCAGGAAATCATCCTGGATTTTAATCttta
aatgaaaatgtcatttgtaatttttttaaatgaaaatgtcatttgtaatt
tttttaaatgaatgcTTATTGAGAATTTGGTGTTTGATTTGTAGCGGGAG
AGTTTTATAATGGTTCTGAAAAGATGAAGATGGTAAGCTTACGGTTTACA
ATTGGTCTGACCTTAaggaaacttattttggcgggagcTAATTTGAATTT
ACCCTGCCATTCGCCAAAAAGATCGGCTCtcggcaaaaattaaaaaagat
tgcTGCCTCGCCATGGAAGTCCctctcaaatttaaaaataggatttttgC
TGCTGACCAAAATGAGCTTCTTAAGGTATTTACCGGTTGCATTCTACTTT
TTCAGGAGACAAACGAAACATTGGAGATGGAAGGTGATCATGATGTGGTA
AGaaaattatacttttttatttgtttatatccAAAGATCGTTTATTACGT
TAAAGAAAAGGGTGGCGTTTTCCTATGAACCTTCCACGGGCTTTCCATAG
ATATATGTTGCTTCTTTATCATTGACCTTGCATCAGCTCAAAATTATTAC
TCATGAGTCTCTTTATGAAATGTCGAGGGAGAGGCTTTTACACCAATTAG
CTTACGAatgaatagaccttatcggagtttttgatttttctaaaaaagcg
atgcattgtgggattgtttcgagtgtattacaatagaaatctcttaggaa
ttcctcgagggaattctattgtaatacactcgaaacaatcccaaaatgca
tcgcttttttagaaaagtcaaaaactccgataaggtctattttgTATTGA
CACTTACTTATTTACCCAGAAATTCCTTCTTCCTCTTACAGTTTGTAGCA
TTATATGACTACGACCCCGTGAAGAGTTCACCGAACCCAAACCCTGCATT
GGAATTGTTGTTCCGTGAGGGTGACATGATGATCGTTTATGATAAAAGTC
GAAGCGATGGATTCTACTCAGCGAAGGTATAAAGTAAAAGTTGGCTTTCA
TTCAATTCAAGTTTTTCGTTGCTAATGTTTAATTGATGCTCAGAATTAAT
GAATCCCCAAACCAAAGGTGAATCGTTGTTCTTGATTTTAAAGTTTAGTC
TCCCTTTTCACTGACTAAAAATCTTCCAGAACGTTCCTTGTTTTGTGCCT
TCAATTGATCCGATACTACTTCATAATCTACAAAAGCTATTCAACATTTT
CTAACATTTAATAACATTTATCTATTTAGATGAACGGCAAGAAAGGACTT
GTTCCGTCCAATTTCATCGAACGCGTCAATCGCCGTTCAACGCACAAGAC
ATCTGCTACGTCATCACGTCATTCGTCATCAATTCGCTCTTCCCGTCACG
TGACTAGTCACCATGACTCTGTAAGTGTGAAGGAATAtcttttgtaaaag
tttttttgacgaCGGAGGTACAGTATTTGGACgaaaaacttttgttgaaa
atagATGGGGATGGCGGAATAATGATATCCTTGGTAAACTTAAACGCAGA
AGGAAACTTTTCGGAAGACTAAAAACGTACTAAGAGATACTCGTTTAGAA
TACGATAAGGTGCGAATTTTGCTGCCTAGGATTGGAAAAGTTAACACAGT
ACCTGAAACCTTTcgtctttttaactttttaggaCAGCAATTCAAGGAAA
GTGCAATTTGACTCGAAATCAAGCATCAAAAAGAAATAG Coding sequence (CDS) from alignment at sc0000187_pilon:528696..532184+ >XLOC_044326 ID=XLOC_044326|Name=XLOC_044326|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=2058bp|location=Sequence derived from alignment at sc0000187_pilon:528696..532184+ (Clytia hemisphaerica_ch_hm2_pilon)
CTCCATCATCAGACTGGACATCATCACCACAGACTGTCGCGACGAGACCA
GCGTGATCATCAGCAGATCGTGAGTCGGGAACGAACCTTCATCACACTTT
ATGATTATGATCCTTACACTATGGGAACTACTGATCGACCTGATCTTCAA
CTCTCTCTAAAGAAAGGAGAGGTCATCACAGTTCTGGGTGAAGTGGATAT
TGAAGGATATTTCACAGCTGTCATCAATgCTCCATCATCAGACTGGACAT
CATCACCACAGACTGTCGCGACGAGACCAGCGTGATCATCAGCAGATCGT
GAGTCGGGAACGAACCTTCATCACACTTTATGATTATGATCCTTACACTA
TGGGAACTACTGATCGACCTGATCTTCAACTCTCTCTAAAGAAAGGAGAG
GTCATCACAGTTCTGGGTGAAGTGGATATTGAAGGATATTTCACAGCTGT
CATCAATgGTCGACGTGGGTTAGTCCCATCCAACTTTGTTGAAGAATATT
CACACTCTTCACATGCTGCGCACAATCATACGAGAGAAGAACATTTCCAA
GGCACTGTACAAGTTGATGGTATTTCTgGTCGACGTGGGTTAGTCCCATC
CAACTTTGTTGAAGAATATTCACACTCTTCACATGCTGCGCACAATCATA
CGAGAGAAGAACATTTCCAAGGCACTGTACAAGTTGATGGTATTTCTgGA
CCGCCATATGCGCCACGTgatttgaaagtaaaaagaGTGGTCACACGCAA
CGCAGTTTTGTTGAGTTGGCTTTTACCGTCCATGGATGACCATTACATAA
GTAATGGATGCAAAGTCATCGGATATCGAGACCGCCATATGCGCCACGTg
atttgaaagtaaaaagaGTGGTCACACGCAACGCAGTTTTGTTGAGTTGG
CTTTTACCGTCCATGGATGACCATTACATAAGTAATGGATGCAAAGTCAT
CGGATATCGACTTTGGGTGAATGGTCAAAGAAAACAAGATGTGACAAACC
CATCGTGTAACAAGGCCCTTATTGATGATGTCGATTTAGCAGGACGTGTT
GAGTTCAGTATTCAAACGATCGGAGAAAGCGACGTGTGTTCTGAGAAATG
TCACTTCGCGATCACCGGCGCTTTGAGTACTCTTCTTTGGGTGAATGGTC
AAAGAAAACAAGATGTGACAAACCCATCGTGTAACAAGGCCCTTATTGAT
GATGTCGATTTAGCAGGACGTGTTGAGTTCAGTATTCAAACGATCGGAGA
AAGCGACGTGTGTTCTGAGAAATGTCACTTCGCGATCACCGGCGCTTTGA
GTACTCTTGAGACAAACGAAACATTGGAGATGGAAGGTGATCATGATGTG
GAGACAAACGAAACATTGGAGATGGAAGGTGATCATGATGTGTTTGTAGC
ATTATATGACTACGACCCCGTGAAGAGTTCACCGAACCCAAACCCTGCAT
TGGAATTGTTGTTCCGTGAGGGTGACATGATGATCGTTTATGATAAAAGT
CGAAGCGATGGATTCTACTCAGCGAAGTTTGTAGCATTATATGACTACGA
CCCCGTGAAGAGTTCACCGAACCCAAACCCTGCATTGGAATTGTTGTTCC
GTGAGGGTGACATGATGATCGTTTATGATAAAAGTCGAAGCGATGGATTC
TACTCAGCGAAGATGAACGGCAAGAAAGGACTTGTTCCGTCCAATTTCAT
CGAACGCGTCAATCGCCGTTCAACGCACAAGACATCTGCTACGTCATCAC
GTCATTCGTCATCAATTCGCTCTTCCCGTCACGTGACTAGTCACCATGAC
TCTATGAACGGCAAGAAAGGACTTGTTCCGTCCAATTTCATCGAACGCGT
CAATCGCCGTTCAACGCACAAGACATCTGCTACGTCATCACGTCATTCGT
CATCAATTCGCTCTTCCCGTCACGTGACTAGTCACCATGACTCTgaCAGC
AATTCAAGGAAAGTGCAATTTGACTCGAAATCAAGCATCAAAAAGAAATA
GgaCAGCAATTCAAGGAAAGTGCAATTTGACTCGAAATCAAGCATCAAAA
AGAAATAG
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000187_pilon | genome | sc0000187_pilon:528696..532184 + |
Properties
| Property Name | Value |
|---|
| Aaloc | 973-1029:3433 |
| Aaloc | 832-972:3030 |
| Aaloc | 697-831:2642 |
| Aaloc | 655-696:2156 |
| Aaloc | 481-654:1552 |
| Aaloc | 352-480:1016 |
| Aaloc | 232-348:575 |
| Aaloc | 1-228:1 |
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