XLOC_044324 (mRNA) -

Overview
NameXLOC_044324
Unique NameXLOC_044324
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000250_pilon:172096..176550-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_044324 ID=XLOC_044324|Name=XLOC_044324|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=4455bp|location=Sequence derived from alignment at sc0000250_pilon:172096..176550- (Clytia hemisphaerica_ch_hm2_pilon)
ATGCCTCGGAAAAAGCTTCCAGACCGTCAGACTATTGAAGACCAAATGGA CGAGCATTTTAACAACATTCTCCTCTCAAAAACTAATTACTCAAGTAATG ACTTATACGAGAGATTCCCTCAACAAATGCGTGATGGTCTTGCTAACGCC AAGCAATGTTATTTCAAAATGTTTGATGATTTCAAGCAAGCATTGGATGA GATTCCATATTTCAACGATGTGTTTAGTCATAACACTGGCAAAGGATTTC TGGGAGGAATGGATCGAGAACACGTGGAAAAGTTACATTTAATGGATCTG AAAAAACAGATTATGATTGGGGAAGTTGTATCGGCTTTGTTATCAGGTAA TCAATTTTTACTACTTTTACTTCGTACTACGCCTAATTTCCTTAAAATGT AGGTTTTCCAGGCTCAAGGTTGATTCTTTAAGTTTAGGTTTTCCAGGCTC AAGGTTGATTCTTTAAGTACACGCTTTTTTTCTTTATAAGAATAGTTTAC TTTGGATGAGGGTCAAATAAAATGCCAAAATTGAGGGTGAAATATGCTTA ATGTATTTTTACTATTTTATTTAGACTTGACTTTTTTACAAACATGAGAA ATGATCAATTTGAGAGTTTTGGACTTTGGAATGAACATTTGGAGCTAAAA TTACATTTCTGCCTCAAAGTTTAAATTCAATTATAACAAAGGAAGCAGTT TTTTCTGTTAACCAAATACAAAATGACTCAGGGCCGGCGAATCAATTTTG AAAGTGGAGGGGCCAAATAGTAAGTGTCTAAGGAGGCGCCACCATGGTTG GCGCCGACGGGCAGAGAAAGCAAAAAAGTGGGGGGGCCATGGCCCCCGGC CCCCCCCCCCGTTTCGCCGGCCCTGTGACTGTATTCTTATCAAACTTTGT GAAACTCACCCTAGAGGGTATTCTTAGGGTATTCTAACGATTTGGCCAAT TTTCTCGGTTAGGGAAAAAAGTCATTGAACGAAAGGTGGCATGATGGTGA AATCTTTCTTGACCAAAATCTGTTCAAGTCATGAGCTTAAAAACAGTAGA ATTTCTTTTAAATCGAACCTATATAACTTGAATACCTCTTAAACTCGATC AAGCTTTATGGTTCTTTCAGTTAATAGTGCCTTATGAACCGTACTCCATA ACTCGATATTCAACTCGAACAAATTCGTTTTCCTCGTGCTTGTTCGAGTT ATGGAGACTCCACTTGTATACATTTTTCTCTTTGTTTCGCTCTATACAGG TAGCTTTGAGCAGTATGAGAGAACCAACGCGCCAAAATCATGGAAACGAG ATGTGTTGGAAATGGAAGTGAGTTCTGACGACGAAAATGAAGATGGGGAG GAAAGCGACGAAGAAGGAAATACTCAACAAAAGACACGTAAAGCAAAGAA GAAAGCAAAGAAAAGCAAAAAACGTAGAGGTAATAAGACCTGATTTATAA GAATAACGAGACTCAAAGATACCAGAAAACACATTTTTAAGTAGCTTGGA ATGGCTGAATTTTAGAACGTGATATTAAGACCAATTTTAGTCTCAAAGTG CCAAGAGATAAAAACAGCCAAGAGATTTACTGGTTCTTATAAAAAAGTGT ACTCTTGTAGACACTATATGTTTTTTTTATAAACAAGTGTCTGTCCCTTG GTCAGGCTGGTGTATGCTTAAGCCTCTAAAGCATCCAGTCATAGCCTATG CTTATTATATGCTTTTTAATTATTATGCTTATAATTCAACCGAGCCAATT CTTTGTAAAATCTAAGCAATTTTGTAAGTTAAGCATTCGATTTTTGGAGC AGTGGAATTTGGCTAGTCATGGAATGTCTTTTTTTTTTTACTTCCAAATC TTTACAGAAAAAAAATTGACTACTTTAAAAATATTTCAGGTTGGTGTATA TGTCTAGGAAATCTGCAAATCTGAGCCTTCATATGCATACAGGAGTTGTG CTTATAAAAAACATGTATTAGGATGAGCGGAAGTTAATTTATTTTCTGCC AACTTTGATTCACATTTAGAATGTGCAGGACGAAGAGTCGATTGTCTGAA CTAGTTGCTCCTTGTATCGCATTGTTAGCTAGAGAAAACTTCTGGAAAGT TCAAGCAACTGCTGAAAAGGTTTCCTTTATTAATTTCATGGACTTTTACA CAACAATTCCAAAAAAATCTTGTTTAACATTTAAGGTGGAGGCGCCAAGA AAAAGACCAAACAAAAGCAACAGGACGAGCCTAAGTCAAAAGCTGAAGAA GAAGAAGAGGAAGAGGAAGAAGGGAGCAGTTCTGCCAAGATGAACCCTAC AGAACAAACAGAGCTGAAATTAACACTATCAAAAGGCTTGAATCCCTTAG GAAGTGACCAATCAGCTCGCCCCATTCGTAACCGTGCTGATCGAAAGGTG CAAGTGGTTAAAGAAACTGATGAAGGAACATTGATTAAATTCCGTGGTAA ATATATCACCTTAGCCAGAGAATACGAATTTGAAGAGCAGCTAGATTATG ATTATGGCAGAAATAAGTTTCACCTTGATCGTCTTAATAAAGATATGATT AAAGTATGTGAATCGGTTGTCGATTTTCTTGATGTTGATATGGAGGCACA GAGACAAGGTCTTTTTGACAACCTAACCAATATGTGGAATGAATGTCAAA CAAGTTTAGTACCATCTGATGAGCAAACCCAGAAAATGGAAACCATTGCT GAACTTGTCAGGAATCTGGGTATGGCTAAAGAGGATCATAGCTCTTTTAG ACGTGGTAATAAAGATTGTTTGGAACTTCAACGTGTTCGTGATGAACGTA ACCGGATCTGTATGGATCACTTTCTGAAATCGATCTGGCGACTTTTTGTT GAAGACGATGCTGATATCGATGATGGTGATCGTTTCTCAGAGGAAGATGT TGAATCAGCATTCTTGGTTAATGAACGAGATCGGGTTATGCTTATCCCGA CATGTGATTGTCATGGTCCTTGTCCATGTTGTTGCTCCGGCTGTTATGAC TATCGACATTTGAATATCACTCACAATGCAGAAGAAAGTAAACGTGGATT TTATGAGAAACCACGACATCCTAACGATAACCGATCACGATTGAAGCATG TGTTGAAGAAAGATAAATCGGCGACATCTACTGATGAACAAGGACGACCG AAAATTGAGGAGCTGTCAGATAGTGAGGAGGAGGTTGAAGAGGATCTTAA ACTAGCTGCAAAGAAACGAAGAGTTTTCTACCGGTTTGAAGATGTTGACC AGGAATGGTTTGATGAATGTTCTCATTGTTGTTGCCAATGTGATCTCCAG AAAATTGAGATGCTCCAAAACAAGATTAAACCTGAACAACCAACACCGGA AACCTTTGAATCCTTTGCTATTGGATTTTGTGAGAAATTAGCAAGCTGTG ATAATTTGAAATATCACAAATCGATTTTCAAGGAAGCTGCTTTCATCTCA AGCGCTGGTTCTGACCATATGCTTCGACAGAAAATCCTTGAGATTTGTCT TCCAATATTCATGGAGGCGATCAAGAAACGTGAAATGGGAACACGTATGT ATCTGGTCCATCTGGTCCTGAAAATTACCATGTCCATGGTGGTGGCTAGG AAGTATTGCTTTCGTGATCCAAACTTTTTCCAGTATCTTGCTAACATGCT GACACCAGTTGATCCTTGTAAAAACCGCGACCCAAATCAATTGCGTGCCG ACACCTGTCATTTGTTGTATGTATCGTTAATGGGTTGTGGTCGTGAGTAT TTCATCAAAGTCTCCCGCACTAAAGCTTTTGAGCATCTCATCGATATTCT ACAGTTGGTACCTGATAATCACAGTGATGCCCAGAGTGCTGAAGATGCTT TCGGCTGTCTCACATTGTTCACTGATGAATGGGACTTGTTTATTCACAAA TTCTCCAAAGCCCCAATCAATAAACTAATCGAAGAATGGCGTCGTTATGG GCTCGAGTATGCTGGTGGTCTTCCAAACTTCATCTACACGCTGGAAAACC TTAAAAAGAGGTTGTACTGTATTATTCATGCTTATCGAATGAATAAAATG ACATTCAGGCTAGATAAAACATTCAATGCTGAAGCACTGCAAGAACACAG TCTAGTTGGTTGCTCTAACCCGAAATGCTACAAGTTAAATTACACAACCC TGGGTGAGTATAAATACAAGAAATGCTCAAAGTGTCATTTAGCTTATTAT TGCACCAAAGCTTGCCAACTCACGCACTGGAAAACACATAAGAAATATTG CGTTAAACCTATTTGGGAGACGGAGAAAGAAAAGCAATGTGACGTTAATA GCAATGAAATTCCATCTATAGTACAACCGCCAAAGCCGCCAAAAACAACA AGAAACTTTAACCCTAGCAATGAATCTAAGCTCAAATGTAGTATCACTGC TGATATGGTTTCTAAGCTAGCCTCAAGTCAAGGAAGAATGACCCAACGGC TGTGA

Coding sequence (CDS) from alignment at sc0000250_pilon:172096..176550-

>XLOC_044324 ID=XLOC_044324|Name=XLOC_044324|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=5592bp|location=Sequence derived from alignment at sc0000250_pilon:172096..176550- (Clytia hemisphaerica_ch_hm2_pilon)
ATGCCTCGGAAAAAGCTTCCAGACCGTCAGACTATTGAAGACCAAATGGA
CGAGCATTTTAACAACATTCTCCTCTCAAAAACTAATTACTCAAGTAATG
ACTTATACGAGAGATTCCCTCAACAAATGCGTGATGGTCTTGCTAACGCC
AAGCAATGTTATTTCAAAATGTTTGATGATTTCAAGCAAGCATTGGATGA
GATTCCATATTTCAACGATGTGTTTAGTCATAACACTGGCAAAGGATTTC
TGGGAGGAATGGATCGAGAACACGTGGAAAAGTTACATTTAATGGATCTG
AAAAAACAGATTATGATTGGGGAAGTTGTATCGGCTTTGTTATCAGATGC
CTCGGAAAAAGCTTCCAGACCGTCAGACTATTGAAGACCAAATGGACGAG
CATTTTAACAACATTCTCCTCTCAAAAACTAATTACTCAAGTAATGACTT
ATACGAGAGATTCCCTCAACAAATGCGTGATGGTCTTGCTAACGCCAAGC
AATGTTATTTCAAAATGTTTGATGATTTCAAGCAAGCATTGGATGAGATT
CCATATTTCAACGATGTGTTTAGTCATAACACTGGCAAAGGATTTCTGGG
AGGAATGGATCGAGAACACGTGGAAAAGTTACATTTAATGGATCTGAAAA
AACAGATTATGATTGGGGAAGTTGTATCGGCTTTGTTATCAGGTAGCTTT
GAGCAGTATGAGAGAACCAACGCGCCAAAATCATGGAAACGAGATGTGTT
GGAAATGGAAGTGAGTTCTGACGACGAAAATGAAGATGGGGAGGAAAGCG
ACGAAGAAGGAAATACTCAACAAAAGACACGTAAAGCAAAGAAGAAAGCA
AAGAAAAGCAAAAAACGTAGAGGTAGCTTTGAGCAGTATGAGAGAACCAA
CGCGCCAAAATCATGGAAACGAGATGTGTTGGAAATGGAAGTGAGTTCTG
ACGACGAAAATGAAGATGGGGAGGAAAGCGACGAAGAAGGAAATACTCAA
CAAAAGACACGTAAAGCAAAGAAGAAAGCAAAGAAAAGCAAAAAACGTAG
AGGTGGAGGCGCCAAGAAAAAGACCAAACAAAAGCAACAGGACGAGCCTA
AGTCAAAAGCTGAAGAAGAAGAAGAGGAAGAGGAAGAAGGGAGCAGTTCT
GCCAAGATGAACCCTACAGAACAAACAGAGCTGAAATTAACACTATCAAA
AGGCTTGAATCCCTTAGGAAGTGACCAATCAGCTCGCCCCATTCGTAACC
GTGCTGATCGAAAGGTGCAAGTGGTTAAAGAAACTGATGAAGGAACATTG
ATTAAATTCCGTGGTAAATATATCACCTTAGCCAGAGAATACGAATTTGA
AGAGCAGCTAGATTATGATTATGGCAGAAATAAGTTTCACCTTGATCGTC
TTAATAAAGATATGATTAAAGTATGTGAATCGGTTGTCGATTTTCTTGAT
GTTGATATGGAGGCACAGAGACAAGGTCTTTTTGACAACCTAACCAATAT
GTGGAATGAATGTCAAACAAGTTTAGTACCATCTGATGAGCAAACCCAGA
AAATGGAAACCATTGCTGAACTTGTCAGGAATCTGGGTATGGCTAAAGAG
GATCATAGCTCTTTTAGACGTGGTAATAAAGATTGTTTGGAACTTCAACG
TGTTCGTGATGAACGTAACCGGATCTGTATGGATCACTTTCTGAAATCGA
TCTGGCGACTTTTTGTTGAAGACGATGCTGATATCGATGATGGTGATCGT
TTCTCAGAGGAAGATGTTGAATCAGCATTCTTGGTTAATGAACGAGATCG
GGTTATGCTTATCCCGACATGTGATTGTCATGGTCCTTGTCCATGTTGTT
GCTCCGGCTGTTATGACTATCGACATTTGAATATCACTCACAATGCAGAA
GAAAGTAAACGTGGATTTTATGAGAAACCACGACATCCTAACGATAACCG
ATCACGATTGAAGCATGTGTTGAAGAAAGATAAATCGGCGACATCTACTG
ATGAACAAGGACGACCGAAAATTGAGGAGCTGTCAGATAGTGAGGAGGAG
GTTGAAGAGGATCTTAAACTAGCTGCAAAGAAACGAAGAGTTTTCTACCG
GTTTGAAGATGTTGACCAGGAATGGTTTGATGAATGTTCTCATTGTTGTT
GCCAATGTGATCTCCAGAAAATTGAGATGCTCCAAAACAAGATTAAACCT
GAACAACCAACACCGGAAACCTTTGAATCCTTTGCTATTGGATTTTGTGA
GAAATTAGCAAGCTGTGATAATTTGAAATATCACAAATCGATTTTCAAGG
AAGCTGCTTTCATCTCAAGCGCTGGTTCTGACCATATGCTTCGACAGAAA
ATCCTTGAGATTTGTCTTCCAATATTCATGGAGGCGATCAAGAAACGTGA
AATGGGAACACGTATGTATCTGGTCCATCTGGTCCTGAAAATTACCATGT
CCATGGTGGTGGCTAGGAAGTATTGCTTTCGTGATCCAAACTTTTTCCAG
TATCTTGCTAACATGCTGACACCAGTTGATCCTTGTAAAAACCGCGACCC
AAATCAATTGCGTGCCGACACCTGTCATTTGTTGTATGTATCGTTAATGG
GTTGTGGTCGTGAGTATTTCATCAAAGTCTCCCGCACTAAAGCTTTTGAG
CATCTCATCGATATTCTACAGTTGGTACCTGATAATCACAGTGATGCCCA
GAGTGCTGAAGATGCTTTCGGCTGTCTCACATTGTTCACTGATGAATGGG
ACTTGTTTATTCACAAATTCTCCAAAGCCCCAATCAATAAACTAATCGAA
GAATGGCGTCGTTATGGGCTCGAGTATGCTGGTGGTCTTCCAAACTTCAT
CTACACGCTGGAAAACCTTAAAAAGAGGTTGTACTGTATTATTCATGCTT
ATCGAATGAATAAAATGACATTCAGGCTAGATAAAACATTCAATGCTGAA
GCACTGCAAGAACACAGTCTAGTTGGTTGCTCTAACCCGAAATGCTACAA
GTTAAATTACACAACCCTGGGTGAGTATAAATACAAGAAATGCTCAAAGT
GTCATTTAGCTTATTATTGCACCAAAGCTTGCCAACTCACGCACTGGAAA
ACACATAAGAAATATTGCGTTAAACCTATTTGGGAGACGGAGAAAGAAAA
GCAATGTGACGTTAATAGCAATGAAATTCCATCTATAGTACAACCGCCAA
AGCCGCCAAAAACAACAAGAAACTTTAACCCTAGCAATGAATCTAAGCTC
AAATGTAGTATCACTGCTGATATGGTTTCTAAGCTAGCCTCAAGTCAAGG
AAGAATGACCCAACGGCTGTGAGTGGAGGCGCCAAGAAAAAGACCAAACA
AAAGCAACAGGACGAGCCTAAGTCAAAAGCTGAAGAAGAAGAAGAGGAAG
AGGAAGAAGGGAGCAGTTCTGCCAAGATGAACCCTACAGAACAAACAGAG
CTGAAATTAACACTATCAAAAGGCTTGAATCCCTTAGGAAGTGACCAATC
AGCTCGCCCCATTCGTAACCGTGCTGATCGAAAGGTGCAAGTGGTTAAAG
AAACTGATGAAGGAACATTGATTAAATTCCGTGGTAAATATATCACCTTA
GCCAGAGAATACGAATTTGAAGAGCAGCTAGATTATGATTATGGCAGAAA
TAAGTTTCACCTTGATCGTCTTAATAAAGATATGATTAAAGTATGTGAAT
CGGTTGTCGATTTTCTTGATGTTGATATGGAGGCACAGAGACAAGGTCTT
TTTGACAACCTAACCAATATGTGGAATGAATGTCAAACAAGTTTAGTACC
ATCTGATGAGCAAACCCAGAAAATGGAAACCATTGCTGAACTTGTCAGGA
ATCTGGGTATGGCTAAAGAGGATCATAGCTCTTTTAGACGTGGTAATAAA
GATTGTTTGGAACTTCAACGTGTTCGTGATGAACGTAACCGGATCTGTAT
GGATCACTTTCTGAAATCGATCTGGCGACTTTTTGTTGAAGACGATGCTG
ATATCGATGATGGTGATCGTTTCTCAGAGGAAGATGTTGAATCAGCATTC
TTGGTTAATGAACGAGATCGGGTTATGCTTATCCCGACATGTGATTGTCA
TGGTCCTTGTCCATGTTGTTGCTCCGGCTGTTATGACTATCGACATTTGA
ATATCACTCACAATGCAGAAGAAAGTAAACGTGGATTTTATGAGAAACCA
CGACATCCTAACGATAACCGATCACGATTGAAGCATGTGTTGAAGAAAGA
TAAATCGGCGACATCTACTGATGAACAAGGACGACCGAAAATTGAGGAGC
TGTCAGATAGTGAGGAGGAGGTTGAAGAGGATCTTAAACTAGCTGCAAAG
AAACGAAGAGTTTTCTACCGGTTTGAAGATGTTGACCAGGAATGGTTTGA
TGAATGTTCTCATTGTTGTTGCCAATGTGATCTCCAGAAAATTGAGATGC
TCCAAAACAAGATTAAACCTGAACAACCAACACCGGAAACCTTTGAATCC
TTTGCTATTGGATTTTGTGAGAAATTAGCAAGCTGTGATAATTTGAAATA
TCACAAATCGATTTTCAAGGAAGCTGCTTTCATCTCAAGCGCTGGTTCTG
ACCATATGCTTCGACAGAAAATCCTTGAGATTTGTCTTCCAATATTCATG
GAGGCGATCAAGAAACGTGAAATGGGAACACGTATGTATCTGGTCCATCT
GGTCCTGAAAATTACCATGTCCATGGTGGTGGCTAGGAAGTATTGCTTTC
GTGATCCAAACTTTTTCCAGTATCTTGCTAACATGCTGACACCAGTTGAT
CCTTGTAAAAACCGCGACCCAAATCAATTGCGTGCCGACACCTGTCATTT
GTTGTATGTATCGTTAATGGGTTGTGGTCGTGAGTATTTCATCAAAGTCT
CCCGCACTAAAGCTTTTGAGCATCTCATCGATATTCTACAGTTGGTACCT
GATAATCACAGTGATGCCCAGAGTGCTGAAGATGCTTTCGGCTGTCTCAC
ATTGTTCACTGATGAATGGGACTTGTTTATTCACAAATTCTCCAAAGCCC
CAATCAATAAACTAATCGAAGAATGGCGTCGTTATGGGCTCGAGTATGCT
GGTGGTCTTCCAAACTTCATCTACACGCTGGAAAACCTTAAAAAGAGGTT
GTACTGTATTATTCATGCTTATCGAATGAATAAAATGACATTCAGGCTAG
ATAAAACATTCAATGCTGAAGCACTGCAAGAACACAGTCTAGTTGGTTGC
TCTAACCCGAAATGCTACAAGTTAAATTACACAACCCTGGGTGAGTATAA
ATACAAGAAATGCTCAAAGTGTCATTTAGCTTATTATTGCACCAAAGCTT
GCCAACTCACGCACTGGAAAACACATAAGAAATATTGCGTTAAACCTATT
TGGGAGACGGAGAAAGAAAAGCAATGTGACGTTAATAGCAATGAAATTCC
ATCTATAGTACAACCGCCAAAGCCGCCAAAAACAACAAGAAACTTTAACC
CTAGCAATGAATCTAAGCTCAAATGTAGTATCACTGCTGATATGGTTTCT
AAGCTAGCCTCAAGTCAAGGAAGAATGACCCAACGGCTGTGA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
XLOC_044324XLOC_044324-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000250_pilongenomesc0000250_pilon:172096..176550 -
Properties
Property NameValue
Aaloc586-2793:2209
Aaloc529-585:2269
Aaloc349-525:3205
Aaloc1-345:4456