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Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000239_pilon:135363..143760+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >XLOC_044307 ID=XLOC_044307|Name=XLOC_044307|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=8398bp|location=Sequence derived from alignment at sc0000239_pilon:135363..143760+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGTCGCTCAAAACGCTGCCAGTCTTGTTTTTGAACCTTGGAGGTGAGAT
GATGTATATCCTGGATCAACGACTAAATGCACAGAATATCCCTCCAGGAA
AAGCTAAAAAGGGTAAAGtttcatttaattatttttttaatttgatttaa
tttctTCTTCGTCTTTCAGGGCTTTCAGCACTTCAAAcgtgtacactttt
ttttgaaaccCGGTATCAGGATTCGAAAGTCGACGACAAATACTTTGATT
AAGAATATTCACATAACTTCCCTCATCCTTCAGaatagattttcggaatt
ttCTTTCAGCAGCTGGTAATGAATGGTTTCTCATATTTTGATTATAGTGA
TGCATGATATTCTGGCAACAATGCTGAACAAAAGGTTCATGGAAGAACTG
TTTAAACCACAAGACGCTTATTCCAGGAAAGCTATGAGGACCGTCTTTGA
TCGTTTGGCACATGCATCTATCATGCGATTGAATTCTGCTAGTATGGATA
AGGTATTAAAACTACAAGATTTATCAGTGAAGGTTCACTATCAATTTTAC
ATTACCCCTATATCAAGGAAAGAcaatttttgtatttgattCTTCTCAAA
AGAATTTCTTTCGAACTGaaacattattttattttattattttttagttG
TACGATTTAATGACCATGGCTTTAAAATATCAAGTAAGTACCGTATAACA
CTATTTTActctttttattatttctttggTTTGTCAATTTATAAACCACT
AATCCTGGgtttgataaaaaacaaagtttccaaacaaagtttggaaaaaa
aaggaaaatgaaaatgaaaaatgaagaagaagaaaatcaattccttgtag
aaatgtggtataattaccattttcacaggagtgatttttggacctacccc
ggtggggtggaggtcctataaattaacccgtgttcgttagttagttagtt
agttagttagttaccaacttttctcgagattggctcattcaatttttctg
attttttgcacaaaggtgcattactataaaccctcgaatgtgacggagcc
cgattttcgaaaaaaaattttttccggccggtagaaccggaaatgtcccg
aaaaaagcggttttttgagattttctcgagattttatcattagttttttg
cgattctttttgcacatagatgcacattagtactgccgaaaaggtgtcga
aaaccgtttgccgaaaaaaaattttttccggtctgtagaaccggaaatgt
gccggaaatcgtcgtttttttcacatttccgtcatattttttcaacttat
ttaattgtttctttacagaaaaatgttctttatgatgatgcccaaaactt
agcattgtttgatttccaaaaaaatcatcctttgaatccggaactccttt
aAAAATCGgccggaacaggcgaaaaccggcgtaaaacggttttccttcat
tttttcaacttaactcgacagattttcatgattttttgcacaatgatgta
aaatggcaatgcccaaaatgtgacagagcccaattttcgaaaaaaaaaat
tttccggccggtagagaccggaaatgtcccgaaaaagcggtttttttgag
attttctcgagattttAtcattagttttttgcgattttttgcacatagat
gcacattagtactgccgaaaaggtgttgAAAACCGTttggcgaaaaaaaa
ttttttccggtctgtagaaccggaaatgtgccggaaatcgtcgttttttc
acatttccgtcacattttttcaacttatttaatacacgggtttcgaatta
aatttttgcttagctttagctttgatcccatgtaaatttgcacgaaaaat
atcaagtaaacagaacgaaaattggccgtgtatcaagcaattttagctca
tttttccattttgacagactttatgggtcattatgaaaacaaaaaacatt
aaaataaaaagtcaatcgtttaatcatatttcttttattgaatttaaaat
agaaaaacatcttttgaatgaacacctggctttcaaaagagaagaaagga
aatctatcaaccttttataaggcatttccccttatcgctccttttattta
cttgattttttctctcgcgccagatttaattcgaaacccgtgtattgttt
ctttacagaaaaatgttctttatgatgatgcccaaaaggtgttgaaaacc
gtttgccgaaaaaaaattttttccggtctgtagaaccggaaatgtgccgg
aaatcgtcgttttttcacattttcttatttaattgtttctttacagaaaa
atgttctttatgatgatgcccaaaacttagcatcgtttgatttccaaaaa
aatcatcctttgaatccggaactccttaaaaatcgccggaacagccgaaa
accggcgtaaaacggttttccttcattttttcaacttatactcgacagat
tttcatgattttttgcacaatgatgtaaaatggcaatgcccaaaatgtga
cagagcccaattttcgaaaaagaaattttttcggccgctagaaccggaaa
tgtcccgaaaaaagcggttttttgagattttCTCAGTTTTAATTTTCTCT
GAATGATTGATTAAAGTGTCGATATTATTTTTCTTTCACCGTTAAACATC
GATGCGTTTCTTAATTGCTTTCTCCGTTCCAATAGATATATAAATCGAAA
TTTAAAATTATACATTACTTCCATTAAATTCTAATTATTCGTTTTATAAA
TAGGTAGGTCCATTAAAGTATTACTTGTTCAATCTTAGATCATCATCACT
GTCAAAAAATTTTCAAAAATATTCATTCAATCTAAAGACATCAAACAAAG
TTTATTCCTGGTTGACTCTATAAAGTAGTAAAAAATGACAAAAAAACAGC
CATTTGTTGATCATATGGTAATTATACCACATTTCTACAAGAAGTAGATT
TTTTTCTTTTTCATTTTTCATTTTCATTTTCATTTTTTTTCTCAATTTTT
TTACTTGATAATATTCCACTCACGAATATATTTTTAACGAGCACAAAGTC
GCAACTTGATTCGAATTCTATCAAAAGTTACAGCCATTTTTTTCTCCAGC
TgtaaattattttgagacagactttagttttaTCTAAGGTTTAACTACTT
CTGGTGTGGAAATTTAAAACTGAAATACAGAAAAGCTCAATTTCAAGCCG
TAATAGgaataacttttttataagaaaaaattgaaagtttttaaattaga
acttttcttaagaaaaaattaaaaatctaccTTTAATAAAAGTCTACCCT
ATCCTCTATCATCATCAGTGTCAGCTGCAGATTATTCTGAGAcagacttt
tatttttattttaggtgAGTTTGAGCAAGCAACCGCAAGATGTTTTAATG
GTCACACTTAATCATATGGACACAATTAGAGAATATTCACGTGGAAATTC
ACAAATCTTGGAACAAGTTGATTACGTTTACAGTCTTATTAACGAGGTAT
CAATCTCTATTGTAAAATATCTACCTTAAACCTCTGATTCCGTGatatta
gtttttgttttgctCATTTCTTATATGTTTTCAATGTATATTTCAATGTT
CCAGCTTATCTAGTTGCATAAGAAAGTGCGTCAATGAAGATGGAAATCTA
AACCTGAAAATGTCATCTCATCTGAATCTTCATTTACAGTATGGTTTTAA
AAGTAAAACCTCttgattttaaattaattttggtgTATTTTTTCCCAACA
GGCGTATTCTACGATGACACCAGGAGAATTTCAACTGATTCGTCAAACCT
TACTCAACTTCTTCCAAGATATGCATATCAGGGTAAGTTATTCCGTCAAT
TTCTCTAGCTATAAAGTGTTTAATGATTCTTTTCTAGCCGATGATGTAGA
GTtctattctttttgtttatcatttaTATATCATTCATATATCATTTCAC
CCTccccccccTGAAAGGTACAACTCAAATCAAACTCCTTagacaagaaa
gcctaagcggcgTAAACAAAAGGCCCAGTAGTGTTGGTAGTGTCAACATA
ATTTTCCGTTGTACAGTCGCCATACAACCTTAATTTACCGGATATATATC
CTGAGCAACTATATTTAGAGCAACTAGAGTCGGGCGATCAATTAAAAATT
GATTATTCTAATTTTTATGAGATATAAGTATCTCTTACTGTTTCAATATA
AAGATTTGACCATATCATATTAATTATATGTGGTTTTTCTTACGCATGCG
AACAATAGTAAGTCAGATAATTCGATTTTTAGCCTAGACTCGTCAACTGA
TAATTGCGCgcataggccccgacaaagtcaaatttcgaccagttgtgttt
taaaggcccattCCGCTGCGCGCTTGGCCAAAAAACGTAAAAAGTCTCTC
GAAACCCCCTGAGGTTTCTTGTTTGTTCGACCACCCCCATGTATGAATAT
AAACCGATATCAAATTAAATTGTCCATTTTACGTGTTTTTTCTTCATTCT
ACTTTCTAGGTTTCCATCTTTTTAAAAGACAAAGTTCAAACACCGAACGG
AAGATTCATTCTACCCAAAGGTGGAAAAGTACCATGGGGATCAGAAACAC
CCGGAGTCATCAGGTAATtgattttgaatctttttttatcAGTCTTTTAT
ATTTAATGCATTGTAAGATCTCTTGGGGGGAGGAAAGGAAAtcgattttt
ttaatatttttaattaaGGAAATTGGCTGTTATGGGTTTTAAGAATAAAG
TGTCGTTTTGTCGTTGTTTTACAGAGTGATGAAGAGAAAAACTAAGCAAG
ACCATGAAGTTTCGGTTGATACTCTCAGAAGATCTTATGATTTCAGTTTA
AAGACTTCACTCTTCTTGACACCCGAAGCTCTAAATTTAGAAACTTCCTT
AGAAAGCAGCTGGAGTTTATCTTATCATCTTGTAAAACCTTTATAAACTG
TGCAGTTTTTTGAATGAGAATAATTAATTAATCTTTCAGGCTGTAATATC
CCCTCGTGGCCTAATTTTTTCTTCTGCCATACTAACTTTTATCTCTtcag
aatttcaaaatcaaattttgagaacaaaaggtttactGAACTGGCAATGT
AAGTTTGGAAACAGAagattgtttaaaatttcaagtcGTACAATAACGAG
TTTATAAaacacaatttcttttttactaTAGATTTTACAACGATCAAGGC
GAACAAGCCAACTTGTCCAGTTTTTTCGTTGAAGGAAAATATCAACTTCC
CGACAAACCAGGCTCTTTTGAAATACTTGGTGATCGAGGAACAAGGCTTG
GTGTTAACATGTAAGTGATTGCGACGACCTATACCCCCTTCCATCAGAAA
ATTGGGGTTCCCTTTTTGTAGTTATACCGTTTTGAGGAATGAATGCAATG
AAAATCTAAACTTCACAGTTCATGTCCGCTAATTTTAATTAATCTATATT
TTCTGTGCAGTTATTATTAATCGctagtaccttatcggggagaAAAGTCG
GAATTTTTACAGATGAGAAAGATTTAAGTCACTTTCCCCaaaaaaaCTTG
ACCCGgtctatttttttcctttttctccgACTAGAAAATAACGATTACCG
TAACGGCAGTGCAGAAAATACAGATTAACCAAGAATACCAGACAGAGAAA
AATGGCCTCTCCTTTCCCTCGGCTAGTCTTTTAAGCTACCTTACcttccc
agccggcacacaacgttatttcaacgtccatacaacgttcataacgtcca
tataacgttagatgaacgttgaaacaacgttgggtGCCAGCTGGGTTTAG
TGTTGAACTCTAACAAAATCTTAGATTTttgatttgtgaaaaaaaagtCC
ACATGAAAATTAATCCACCTTGATATACCTTTTCATTCAGGTATACGATG
GCGAGACCAGTGGAGACATCCATCTCAACAACCGAATCTGTTACCAGCAA
GCCATCCATACAATCTACAAAATCGgtatattttgatttctttctctGTG
TCCATTGTGTTTAAGGCCTTATTTAACGCATCCAGAAAATAAATTTAGTC
GTATTTGAAAAGTTGAACCTCGTGAACCGAAAATATGACCTAATAAGGTT
GGCcatcgcggtgtcactaaacttcagcccccccccaatataaaaatgct
tcctacggcactgacaTTTGTTTTTAATTCTCATATCCATAGGAAGCAGA
TGATGTTAATAATACGGAATCAGCGAAAGCAGAATTGAACTTGTTGAACC
ATCTCCTTGCTGGTGCTAACAAAGGTTTGATCGCATTAACATTATTATTC
TGAAAGTTGCTTTAGCGAGTTTCTCCATCATGGGTTTTGTAATTGCTAGC
TGATCAAATATGTGCTCTGGTTTAATATGTATCAATAAATTTCGGGGATC
GTAATTATGACTAATTTAGGCGTTGTCTATAATAATAACTTTTATACTTC
CTGCTTCAATCAAGGCAATAAAATATTAAGTTTGGGGTAAAAATATTGTC
GGCTAAACTTTTTGTCGAGTACGATTGATGTCGAGTAAGACCAAAAAGCT
GACACAGTTCTCACGTCAAAACTTgtaatttgaatatcttttttttttct
caggacCATAACAAAATCAACAGTCCAAATTACTCAAACTATCAGACTAT
TCTTTAAAACccttttgtttgtatttttccATTTAGACTCGAAAGACTTC
CGATTGAATCTGTTTGACTCTGACGCGCAAGAACAGTAAGAGAAAATCTT
TTCTTTGATTAACAATTTTCTCTgttataaacaataaaattcaaaactaa
CTAGGGTATGACTAGAAAAACTGATGACCAAATCATAGTGTAGTAGCGTC
GTTTATACGAACTAGAACTAATTATTATCCCGTAACAGTTTGCGTACTCT
CATATAACCTATATCACTGCTTAAAGGCCGATCTCCATtttcgcgcgaaa
tgagcgacagtttttttcttaaccttttttgcctgaagaaaagattacgt
cataaaaaagtttcgcgcgaacaaacaaaaatttgagggaagtgctactt
ttttcatctgttacgtcaatttcgaccaatggaattgcttcatttttcaa
ccgaccaatgaccttacaaaaacgtcaaaaagttttcgctcatgtcgcgc
gaaagtggagaccggccttaacacGTAATATATAAacgagtctacttctg
actgaactttgatTTCTGACGATTTTGAGGGCGCTGGAGTACAGTCagcg
tcatccagtctatcaaaaatcTATAAGTGGCCCCCGGGCTACAAAATTCC
TTGTCACATAtttttttGTCGTGGTTTGATCAAATATTTCCTTTTACTAA
TACTCTTTTCAGTAAGGTTCATCACCGGCACCCTTCATATTATTTTCACT
GACTATGTTTTCACTTCGAGATGATCGCTCAAATTAATATAAACATTGGC
ATTCTATTTTCTTTTCCAGAGTTGCAGAGAAGCAATACGCAAAAGTTCGC
CATCGTGAAGTCGTTGTTGATGCAACACAGGTATAAACAGTAAAATAAAG
AGATAAAGTTGCTTCAAGATTCTGAGAAACAGAGACAACTGAAAATTTTG
GGGCATTTTTCATCCGGGTTAATTGTCTAGGGGTAATAGTCCCTATTGCT
ATTGGTATTTGTTCAGGGAGCACCTACTTTCCTCGGGACCAATTTTCTCA
GTTCTGTCCTGTCACGATGCTTATATGATGTCTACTCATAAGGaaagttg
tttttgaatttccaaaCTCGTTAGCTTCTTTATATTACACATTTTACGAT
GtcgtaatttttcatttgaatttcatttcaaCAACTTTAGCGATCACAAA
GAAGTGAGATTACGCAACTGATGAATGAATTCTCTATCGAAAGCTCTGGT
GCAGGTACTCtcaccattttttgaatttctcttgATATTACGAACTATAA
TTTAGGTAACCCTTTTTCAAAGACCACAATACAGGAGATAGCACACTGAC
ATAATTTCAACCGAACACTGTAGATCTCCTCATGAATAGTTCATTTATCC
ACCATCGTAAAAGAgcattatatttcaaaataggGGTGCCATACCTactg
aagttttttttaaattaatttttcaaaaggtaCATTCACGGTAAAGTCCA
GTATTTTCATCCTTTCTGGGTGTTACCAATGCTGTTTGGTATGTGTGGAC
GGTTAGGGTAAGCTTTTCGACCCTCCCCAAGTCTCTAAAGGGTTACAAAA
AGGACAAAACGTAAGAATAGTCTCTCTAGTAGTCAGGATTCCCGTCCCCT
CCCTTGTACCAATGACGACGATTTttagtagtttttttttcatctttaca
GGTGGTGATAAAGGAGATGATTTATTGGCCTTGATGGATTCCACttga Coding sequence (CDS) from alignment at sc0000239_pilon:135363..143760+ >XLOC_044307 ID=XLOC_044307|Name=XLOC_044307|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=2274bp|location=Sequence derived from alignment at sc0000239_pilon:135363..143760+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGTCGCTCAAAACGCTGCCAGTCTTGTTTTTGAACCTTGGAGGTGAGAT
GATGTATATCCTGGATCAACGACTAAATGCACAGAATATCCCTCCAGGAA
AAGCTAAAAAGGATGTCGCTCAAAACGCTGCCAGTCTTGTTTTTGAACCT
TGGAGGTGAGATGATGTATATCCTGGATCAACGACTAAATGCACAGAATA
TCCCTCCAGGAAAAGCTAAAAAGGTGATGCATGATATTCTGGCAACAATG
CTGAACAAAAGGTTCATGGAAGAACTGTTTAAACCACAAGACGCTTATTC
CAGGAAAGCTATGAGGACCGTCTTTGATCGTTTGGCACATGCATCTATCA
TGCGATTGAATTCTGCTAGTATGGATAAGTGATGCATGATATTCTGGCAA
CAATGCTGAACAAAAGGTTCATGGAAGAACTGTTTAAACCACAAGACGCT
TATTCCAGGAAAGCTATGAGGACCGTCTTTGATCGTTTGGCACATGCATC
TATCATGCGATTGAATTCTGCTAGTATGGATAAGttGTACGATTTAATGA
CCATGGCTTTAAAATATCAAttGTACGATTTAATGACCATGGCTTTAAAA
TATCAAgtgAGTTTGAGCAAGCAACCGCAAGATGTTTTAATGGTCACACT
TAATCATATGGACACAATTAGAGAATATTCACGTGGAAATTCACAAATCT
TGGAACAAGTTGATTACGTTTACAGTCTTATTAACGAGgtgAGTTTGAGC
AAGCAACCGCAAGATGTTTTAATGGTCACACTTAATCATATGGACACAAT
TAGAGAATATTCACGTGGAAATTCACAAATCTTGGAACAAGTTGATTACG
TTTACAGTCTTATTAACGAGGCGTATTCTACGATGACACCAGGAGAATTT
CAACTGATTCGTCAAACCTTACTCAACTTCTTCCAAGATATGCATATCAG
GGCGTATTCTACGATGACACCAGGAGAATTTCAACTGATTCGTCAAACCT
TACTCAACTTCTTCCAAGATATGCATATCAGGGTTTCCATCTTTTTAAAA
GACAAAGTTCAAACACCGAACGGAAGATTCATTCTACCCAAAGGTGGAAA
AGTACCATGGGGATCAGAAACACCCGGAGTCATCAGGTTTCCATCTTTTT
AAAAGACAAAGTTCAAACACCGAACGGAAGATTCATTCTACCCAAAGGTG
GAAAAGTACCATGGGGATCAGAAACACCCGGAGTCATCAGATTTTACAAC
GATCAAGGCGAACAAGCCAACTTGTCCAGTTTTTTCGTTGAAGGAAAATA
TCAACTTCCCGACAAACCAGGCTCTTTTGAAATACTTGGTGATCGAGGAA
CAAGGCTTGGTGTTAACATATTTTACAACGATCAAGGCGAACAAGCCAAC
TTGTCCAGTTTTTTCGTTGAAGGAAAATATCAACTTCCCGACAAACCAGG
CTCTTTTGAAATACTTGGTGATCGAGGAACAAGGCTTGGTGTTAACATGT
ATACGATGGCGAGACCAGTGGAGACATCCATCTCAACAACCGAATCTGTT
ACCAGCAAGCCATCCATACAATCTACAAAATCGGTATACGATGGCGAGAC
CAGTGGAGACATCCATCTCAACAACCGAATCTGTTACCAGCAAGCCATCC
ATACAATCTACAAAATCGGAAGCAGATGATGTTAATAATACGGAATCAGC
GAAAGCAGAATTGAACTTGTTGAACCATCTCCTTGCTGGTGCTAACAAAG
GAAGCAGATGATGTTAATAATACGGAATCAGCGAAAGCAGAATTGAACTT
GTTGAACCATCTCCTTGCTGGTGCTAACAAAGACTCGAAAGACTTCCGAT
TGAATCTGTTTGACTCTGACGCGCAAGAACAACTCGAAAGACTTCCGATT
GAATCTGTTTGACTCTGACGCGCAAGAACAAGTTGCAGAGAAGCAATACG
CAAAAGTTCGCCATCGTGAAGTCGTTGTTGATGCAACACAGAGTTGCAGA
GAAGCAATACGCAAAAGTTCGCCATCGTGAAGTCGTTGTTGATGCAACAC
AGCGATCACAAAGAAGTGAGATTACGCAACTGATGAATGAATTCTCTATC
GAAAGCTCTGGTGCAGCGATCACAAAGAAGTGAGATTACGCAACTGATGA
ATGAATTCTCTATCGAAAGCTCTGGTGCAGGTGGTGATAAAGGAGATGAT
TTATTGGCCTTGATGGATTCCACttgaGTGGTGATAAAGGAGATGATTTA
TTGGCCTTGATGGATTCCACttga
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000239_pilon | genome | sc0000239_pilon:135363..143760 + |
Properties
| Property Name | Value |
|---|
| Aaloc | 1093-1137:8354 |
| Aaloc | 1027-1089:7841 |
| Aaloc | 967-1026:7471 |
| Aaloc | 919-963:6689 |
| Aaloc | 835-915:6193 |
| Aaloc | 751-834:5892 |
| Aaloc | 622-747:5183 |
| Aaloc | 517-618:4510 |
| Aaloc | 436-516:3752 |
| Aaloc | 304-435:3365 |
| Aaloc | 268-303:648 |
| Aaloc | 115-267:350 |
| Aaloc | 1-111:1 |
|
