XLOC_043937 (mRNA) -

Overview


Name	XLOC_043937
Unique Name	XLOC_043937
Type	mRNA
Organism	Clytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence

The following sequences are available for this feature:

mRNA from alignment at sc0000001_pilon:4449082..4451526-
coding sequence from alignment at sc0000001_pilon:4449082..4451526-

mRNA from alignment at sc0000001_pilon:4449082..4451526-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>XLOC_043937 ID=XLOC_043937|Name=XLOC_043937|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=2445bp|location=Sequence derived from alignment at sc0000001_pilon:4449082..4451526- (Clytia hemisphaerica_ch_hm2_pilon)
ATGAATTTTGAAATCAACAATATAAAGATAAAAGAAGTAGCTCAAGATGA
GGGAGAATCTAATATCCCAATCAAATTTTCATTTGATATTCGGAAAAACG
ATGAAGTTGTTGGTACCTGCTTTGTATCTATGGATAATTTGCGTGATCTA
GTTAAGCTTGTCGATGATGGAAGAAATGATTTTCTGTTCAAGCCGAAATC
AGCTAAAAAACCAAAACGAAAACGAGTGAAACAAGCCCGAGTGAAACAAG
ACCATCAATGTCAGGATTGTGGTGAAATATTTCCCACAATGTTGGGACTC
GTGGAACATTATAATGCATTTCACGAAGGCTTGAAGCCTTTTAAATGTGA
TTTGTGTGGTAAAGATTTTACCAACAAATATAGTCTTCTTAATCACTTGA
ATCTACATCTTGATATCAGACCATTTGAATGTGAACAATGTGGCAGATGT
TATTCTCTAAAAACTAACCTTATCAAACATGTAAATACTATTCATAAACG
TATTCAAAGATTTCAATGTGAGCAATGTGGGAAGGGTTTTTACCAGAAAT
GGCAACTTCAGAAACACGTAGATATAAACCATAAAGGAATAAAAGCATTT
AAGTGCACAGAATGTGGTAAATCTTTTGGACTGAAGAGATCATTGGTTGC
ACATCAAAAAACTCACACAGGCATTAAGCCTTTTGAATGTCAAGTTTGTG
GGAAAAGTTTTTACAGGCGATATTGTCTAGACATTCATTCAAAAATTCAT
GAAGAGACAAGAGAACTTTTTCAGTGTAATGAATGTGATCAAACATTTAC
CTTAAGAAGTAACCTCATTGCTCATCAAAAGAGACATACTGGGATCAAAC
CGTTTCAATGCCAAGTCTGTGTCAAAAGTTTCTTTAGGAAATCTTGTCTC
CTAAAACATCAAAAAACACATGAAGAAAATCAAGAACCTGCTAAAGCGTT
TCAATGCACTGAATGTAGTAAATCGTATGCAAGTAAAAAAGCTCTTGTTC
TTCACCAAAAAACTCATGAGACTCGAATAAGACCGTATAAATGTAATGTT
TGTAGTAAAACTTTTTTACGAAATACCCACTTCCAAGATCACCAAAAAAT
TCACTTAGAGAATCGAGAACAATTTCAATGTTCAGAATGTGAGAAGTCAT
TTTTAAGCAAAAGCAGTCTTCTAGCTCATCAAAGAAAGTCTCACGAAGAT
GCGCAACTTCTCAATGAAGCATCTGATCAGGCAGAAATCTCAATAGGAGA
CGATGGAATAATAAACGATGAAGTATCAGTTATAATGGAAGTACAAAATT
ATGAAGAAGTACTGAACGAGAAAGAAGAACTGAACGAGGAAGAACCATCA
AATGACTTGGAGGAACCATCTGAGAAAGCTCCTTCTTTTGAATGCACAGA
ATGTGGTAAATCATTTTCGCATAAGAGATCGCTTGTCAGTCATCAAAAGA
AACATACCGGGAATCGACCTTTTCAGTGTGAAATTTGCAGTAAATCATTT
TTCAGAGGCTATGACCTTCAAATTCACATGAAAGTTCATTCAGAAGCTCG
AGAACGATTTCAATGCTCAGAGTGTGACAAGTCATTTTCTAGCAAGGGCA
ACCTTTTAGCTCATCAGAGAAAGCCCCACAAAGAACGATCAAATGGTTTG
GATGAATCGATGAATGAAGATCAATCCCTTGAATGTACAGAATGTGGTGA
ATCGTTTACAAGTAAAAAAACGCTTGCTAGCCATCAAAAAATTCATAACG
GAATAAAACCATTTAAATGTGACATTTGCGATAAGTCTTTTCTACGTAAA
AGCTCATTGAAAACCCACCAAGAAATACATTCACAGACTCGAGAACGATT
GGAATGTCAAGATTGTGGTGAATCGTTTACAAGTAAAAAGACGCTTGCCA
GCCATCAAAAAATTCATTCAGGAGTAAAACCATTTAAATGTGACATTTGT
GATAAGTCTTTTCTACGTAAAAGCTCATTGAAAACCCACCAAGAAATACA
TTTAGAGACTCGAGAACGATTCGAATGTCAAGATTGTGATAAGACATTTA
CATTAAAGAAAAACCTTTTAGTTCATTGCAAGAAATACCACAATGATCTC
TCCCACGAGGAAATTGAGAACAGTGATGAAGATGAGAATCAGGAGGAGAC
AACTGGTTCTACTACTCAAAACAAAAGTTTTGAATGCACAGACTGTGGTA
AATCGTATTCAATTAAGAAATCACTTTACAATCACCAAAGGACTCACACA
AGTATTAAGCCATTTCAGTGTGAAGTTTGTAGCAAATCATTTTTTAGGAT
GTATGAGCTTAATGTGCATCGAGAAGTACACTCAGAAAACAGAGAACGAT
TTCAATGTCAAGAATGTGATAAATCATTTTCGAACAAGTCCAACCTGGCA
GCTCATCAAAGGAAATTTCACAGCACGACTTCAACCAAAAAGTGA

Coding sequence (CDS) from alignment at sc0000001_pilon:4449082..4451526-

>XLOC_043937 ID=XLOC_043937|Name=XLOC_043937|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=4890bp|location=Sequence derived from alignment at sc0000001_pilon:4449082..4451526- (Clytia hemisphaerica_ch_hm2_pilon)
ATGAATTTTGAAATCAACAATATAAAGATAAAAGAAGTAGCTCAAGATGA
GGGAGAATCTAATATCCCAATCAAATTTTCATTTGATATTCGGAAAAACG
ATGAAGTTGTTGGTACCTGCTTTGTATCTATGGATAATTTGCGTGATCTA
GTTAAGCTTGTCGATGATGGAAGAAATGATTTTCTGTTCAAGCCGAAATC
AGCTAAAAAACCAAAACGAAAACGAGTGAAACAAGCCCGAGTGAAACAAG
ACCATCAATGTCAGGATTGTGGTGAAATATTTCCCACAATGTTGGGACTC
GTGGAACATTATAATGCATTTCACGAAGGCTTGAAGCCTTTTAAATGTGA
TTTGTGTGGTAAAGATTTTACCAACAAATATAGTCTTCTTAATCACTTGA
ATCTACATCTTGATATCAGACCATTTGAATGTGAACAATGTGGCAGATGT
TATTCTCTAAAAACTAACCTTATCAAACATGTAAATACTATTCATAAACG
TATTCAAAGATTTCAATGTGAGCAATGTGGGAAGGGTTTTTACCAGAAAT
GGCAACTTCAGAAACACGTAGATATAAACCATAAAGGAATAAAAGCATTT
AAGTGCACAGAATGTGGTAAATCTTTTGGACTGAAGAGATCATTGGTTGC
ACATCAAAAAACTCACACAGGCATTAAGCCTTTTGAATGTCAAGTTTGTG
GGAAAAGTTTTTACAGGCGATATTGTCTAGACATTCATTCAAAAATTCAT
GAAGAGACAAGAGAACTTTTTCAGTGTAATGAATGTGATCAAACATTTAC
CTTAAGAAGTAACCTCATTGCTCATCAAAAGAGACATACTGGGATCAAAC
CGTTTCAATGCCAAGTCTGTGTCAAAAGTTTCTTTAGGAAATCTTGTCTC
CTAAAACATCAAAAAACACATGAAGAAAATCAAGAACCTGCTAAAGCGTT
TCAATGCACTGAATGTAGTAAATCGTATGCAAGTAAAAAAGCTCTTGTTC
TTCACCAAAAAACTCATGAGACTCGAATAAGACCGTATAAATGTAATGTT
TGTAGTAAAACTTTTTTACGAAATACCCACTTCCAAGATCACCAAAAAAT
TCACTTAGAGAATCGAGAACAATTTCAATGTTCAGAATGTGAGAAGTCAT
TTTTAAGCAAAAGCAGTCTTCTAGCTCATCAAAGAAAGTCTCACGAAGAT
GCGCAACTTCTCAATGAAGCATCTGATCAGGCAGAAATCTCAATAGGAGA
CGATGGAATAATAAACGATGAAGTATCAGTTATAATGGAAGTACAAAATT
ATGAAGAAGTACTGAACGAGAAAGAAGAACTGAACGAGGAAGAACCATCA
AATGACTTGGAGGAACCATCTGAGAAAGCTCCTTCTTTTGAATGCACAGA
ATGTGGTAAATCATTTTCGCATAAGAGATCGCTTGTCAGTCATCAAAAGA
AACATACCGGGAATCGACCTTTTCAGTGTGAAATTTGCAGTAAATCATTT
TTCAGAGGCTATGACCTTCAAATTCACATGAAAGTTCATTCAGAAGCTCG
AGAACGATTTCAATGCTCAGAGTGTGACAAGTCATTTTCTAGCAAGGGCA
ACCTTTTAGCTCATCAGAGAAAGCCCCACAAAGAACGATCAAATGGTTTG
GATGAATCGATGAATGAAGATCAATCCCTTGAATGTACAGAATGTGGTGA
ATCGTTTACAAGTAAAAAAACGCTTGCTAGCCATCAAAAAATTCATAACG
GAATAAAACCATTTAAATGTGACATTTGCGATAAGTCTTTTCTACGTAAA
AGCTCATTGAAAACCCACCAAGAAATACATTCACAGACTCGAGAACGATT
GGAATGTCAAGATTGTGGTGAATCGTTTACAAGTAAAAAGACGCTTGCCA
GCCATCAAAAAATTCATTCAGGAGTAAAACCATTTAAATGTGACATTTGT
GATAAGTCTTTTCTACGTAAAAGCTCATTGAAAACCCACCAAGAAATACA
TTTAGAGACTCGAGAACGATTCGAATGTCAAGATTGTGATAAGACATTTA
CATTAAAGAAAAACCTTTTAGTTCATTGCAAGAAATACCACAATGATCTC
TCCCACGAGGAAATTGAGAACAGTGATGAAGATGAGAATCAGGAGGAGAC
AACTGGTTCTACTACTCAAAACAAAAGTTTTGAATGCACAGACTGTGGTA
AATCGTATTCAATTAAGAAATCACTTTACAATCACCAAAGGACTCACACA
AGTATTAAGCCATTTCAGTGTGAAGTTTGTAGCAAATCATTTTTTAGGAT
GTATGAGCTTAATGTGCATCGAGAAGTACACTCAGAAAACAGAGAACGAT
TTCAATGTCAAGAATGTGATAAATCATTTTCGAACAAGTCCAACCTGGCA
GCTCATCAAAGGAAATTTCACAGCACGACTTCAACCAAAAAGTGAATGAA
TTTTGAAATCAACAATATAAAGATAAAAGAAGTAGCTCAAGATGAGGGAG
AATCTAATATCCCAATCAAATTTTCATTTGATATTCGGAAAAACGATGAA
GTTGTTGGTACCTGCTTTGTATCTATGGATAATTTGCGTGATCTAGTTAA
GCTTGTCGATGATGGAAGAAATGATTTTCTGTTCAAGCCGAAATCAGCTA
AAAAACCAAAACGAAAACGAGTGAAACAAGCCCGAGTGAAACAAGACCAT
CAATGTCAGGATTGTGGTGAAATATTTCCCACAATGTTGGGACTCGTGGA
ACATTATAATGCATTTCACGAAGGCTTGAAGCCTTTTAAATGTGATTTGT
GTGGTAAAGATTTTACCAACAAATATAGTCTTCTTAATCACTTGAATCTA
CATCTTGATATCAGACCATTTGAATGTGAACAATGTGGCAGATGTTATTC
TCTAAAAACTAACCTTATCAAACATGTAAATACTATTCATAAACGTATTC
AAAGATTTCAATGTGAGCAATGTGGGAAGGGTTTTTACCAGAAATGGCAA
CTTCAGAAACACGTAGATATAAACCATAAAGGAATAAAAGCATTTAAGTG
CACAGAATGTGGTAAATCTTTTGGACTGAAGAGATCATTGGTTGCACATC
AAAAAACTCACACAGGCATTAAGCCTTTTGAATGTCAAGTTTGTGGGAAA
AGTTTTTACAGGCGATATTGTCTAGACATTCATTCAAAAATTCATGAAGA
GACAAGAGAACTTTTTCAGTGTAATGAATGTGATCAAACATTTACCTTAA
GAAGTAACCTCATTGCTCATCAAAAGAGACATACTGGGATCAAACCGTTT
CAATGCCAAGTCTGTGTCAAAAGTTTCTTTAGGAAATCTTGTCTCCTAAA
ACATCAAAAAACACATGAAGAAAATCAAGAACCTGCTAAAGCGTTTCAAT
GCACTGAATGTAGTAAATCGTATGCAAGTAAAAAAGCTCTTGTTCTTCAC
CAAAAAACTCATGAGACTCGAATAAGACCGTATAAATGTAATGTTTGTAG
TAAAACTTTTTTACGAAATACCCACTTCCAAGATCACCAAAAAATTCACT
TAGAGAATCGAGAACAATTTCAATGTTCAGAATGTGAGAAGTCATTTTTA
AGCAAAAGCAGTCTTCTAGCTCATCAAAGAAAGTCTCACGAAGATGCGCA
ACTTCTCAATGAAGCATCTGATCAGGCAGAAATCTCAATAGGAGACGATG
GAATAATAAACGATGAAGTATCAGTTATAATGGAAGTACAAAATTATGAA
GAAGTACTGAACGAGAAAGAAGAACTGAACGAGGAAGAACCATCAAATGA
CTTGGAGGAACCATCTGAGAAAGCTCCTTCTTTTGAATGCACAGAATGTG
GTAAATCATTTTCGCATAAGAGATCGCTTGTCAGTCATCAAAAGAAACAT
ACCGGGAATCGACCTTTTCAGTGTGAAATTTGCAGTAAATCATTTTTCAG
AGGCTATGACCTTCAAATTCACATGAAAGTTCATTCAGAAGCTCGAGAAC
GATTTCAATGCTCAGAGTGTGACAAGTCATTTTCTAGCAAGGGCAACCTT
TTAGCTCATCAGAGAAAGCCCCACAAAGAACGATCAAATGGTTTGGATGA
ATCGATGAATGAAGATCAATCCCTTGAATGTACAGAATGTGGTGAATCGT
TTACAAGTAAAAAAACGCTTGCTAGCCATCAAAAAATTCATAACGGAATA
AAACCATTTAAATGTGACATTTGCGATAAGTCTTTTCTACGTAAAAGCTC
ATTGAAAACCCACCAAGAAATACATTCACAGACTCGAGAACGATTGGAAT
GTCAAGATTGTGGTGAATCGTTTACAAGTAAAAAGACGCTTGCCAGCCAT
CAAAAAATTCATTCAGGAGTAAAACCATTTAAATGTGACATTTGTGATAA
GTCTTTTCTACGTAAAAGCTCATTGAAAACCCACCAAGAAATACATTTAG
AGACTCGAGAACGATTCGAATGTCAAGATTGTGATAAGACATTTACATTA
AAGAAAAACCTTTTAGTTCATTGCAAGAAATACCACAATGATCTCTCCCA
CGAGGAAATTGAGAACAGTGATGAAGATGAGAATCAGGAGGAGACAACTG
GTTCTACTACTCAAAACAAAAGTTTTGAATGCACAGACTGTGGTAAATCG
TATTCAATTAAGAAATCACTTTACAATCACCAAAGGACTCACACAAGTAT
TAAGCCATTTCAGTGTGAAGTTTGTAGCAAATCATTTTTTAGGATGTATG
AGCTTAATGTGCATCGAGAAGTACACTCAGAAAACAGAGAACGATTTCAA
TGTCAAGAATGTGATAAATCATTTTCGAACAAGTCCAACCTGGCAGCTCA
TCAAAGGAAATTTCACAGCACGACTTCAACCAAAAAGTGA

Gene-mRNA-Prot

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
XLOC_043937	XLOC_043937-protein	Clytia hemisphaerica_ch_hm2_pilon	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000001_pilon	genome	sc0000001_pilon:4449082..4451526 -

Properties


Property Name	Value
Aaloc	1-2445:2446

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XLOC_043937 (mRNA) -