XLOC_043908 (mRNA) -

Overview
NameXLOC_043908
Unique NameXLOC_043908
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000348_pilon:238247..245588+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_043908 ID=XLOC_043908|Name=XLOC_043908|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=7342bp|location=Sequence derived from alignment at sc0000348_pilon:238247..245588+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGCCTAAAAATGAAGCAGAGTTTAAATGGACTTGTAAACAATGTACTTA TGGCAATTGGCCATCAGCTACCAAATGTGTTATGTGTAAATTTGACCCGA GGAATAGTATTAATAAAAACCACATTGCAGAAGGTGGAAATCATGAAAAC AGTGAACGATGTCACGTGATCGATTGCTTAGGTGAGAGCACGTGTGAACA TCAAGGGAGTGGAGACGAAACGAGTAGCTCCAATGAGAAAAATGGTGAAG CATGTAGttctttgaataaaattaataaatggCCATGTTCTTTGTGTTCG TATACAAATTGGACGAAATCTGAATTTTGTGTCATGTGCAAAACAGAGAA ACCAAGTGAATTTAAATTAGTTGAATCATTGAGGAACATTgaaaagaatg aagagaaaaaagagaaaaataaattctcaagTCTGACTAGAGGTCATAAA TGGTTATGTGTGAAATGTACTTATGAGAACTGGCCAAAAGCTTTCAAATG TGCCATTTGTCAACATCCGAAGAATAAGAGTTATAAACAAGATGACggcc agaaaaatgaaaaaacatgtttaaatgagaagaaaactttaaaggaaaag aaCAGTAGTTATTCAAGGAAGATTCATTCACCCAAAAGGTCACCACCCAG GTCGCCAAATACTATTTCTAGGAATAACAGTATAAACAATATTTTCGACA TCTCTAAACAAGACGATGATAAAATTATGGATATTGCTTTAAGTATGGAG AAAATCACATTCCCATCGGAGAACAAACGTTTGAATCAGATTCGTAATCG TATGCAACCAAAAGATTGGGTGTGGTTGGCAGCCTGCAAAGGAGTAGCTG ACCATGATATCACGGCTGTATCCAATTATTTAGCTTTGGGTGGTGACCGC GCAAGACAATTATCCAATGAAGATGTGACTGTTTTAAATCAACCAGGACG CTTTGAGCAAGGACATACATTAGTCCACTTAGCAATACGCTTCCAACGTG AAGATATTTTAAGGATGCTTTTATTACCAGAGACACCGCATCGTTCAAGA AAGAGACTACCGTGTCATGAATGTCCCGAACTAGCAACTACTATACGCAA AAATGTAGCTCATTCTATACGAAGTCGTAAAGGGGAATTTGGCTGCCCTT TCTTTACCGAACTCGTCACCTTCTCACTGCCAGGAGGTAAATATTTCAAT ACTTTCAATACttgaaaatagtcaaaaacTTGGTATTTGACATGACATTG CATTTCTTAAAACATCTTTTCCATTATGGGAGAACTGTTATGTTAAGTAT TGTTCAATCTTtagatgtactttttcattgcaCACGTGCTTTGTTAACTT CTTTCAGATATGTTGGAACTACCGAACAGTACTCGTCATCAAATCTTCTC CGAAATACTTGATGTTGATGTCAAAAATGGTAAGCTACTCAGTTTCCAGG CTTCGatggcttcaatggccaaaatgttaagaacaatttgagaacatttt aaggtttttcaaatCTAAAACACCCCATTTTTCAGGGAATTGCACAAAGA ATAACATAGTTTACACCCCctcccctttataaaggggagGGGGTGTAGCG ATgttcaaaaaatttcagaaaggggggtaagagaatttcaTGTAGAAAGT TTTCAGAAAGGGGGAGGTTCATTTAGgaattggggggggggcggtTAATG CGttagcaaagttctttgaaccatagaggtataaagaaagacaggagatg aatttgtcggtaattggtcgttaaagtcttttgatttcttttatgtaata aatcaaaagaaattctaggctcgcccgatgaaatacgactttttagtaga actcaagtttgctctgaacattcttactatcagcatcgaagatttctagc cttctaatatacgagaataaaataaaatttagctccacgaaataagtttg cgttcaactttgtcatccattaaattttgttttgaaaagatattttctcc agccagaaaataaaaagttctgtataagcacacacaatttcagacccaat ttgtagacaaaaagtcgctggagaattttggaggaaagtattaatcaata gggttcaccttgaagaaaatgttcatCGAAAAATcctgtcatttgatgaa ggattgcaaagtttacaggccttttttaatCCATAttttttcttacacca atgtcagaaacaatgaatctcgtctcatcttatttccaacacttaaggta gccaataagatttcacctatcaacaaaagagctcattaaaaatgcacgat atatgagattatgatcatgcatacctcgtaatttttttaatcgtagggcg agcatggttacaatagcatacttctcctgtttctttatacctccatgttt GAACCCATCTTTCTAGATTCTAGTTTTGCAGTCTTGGACTGGGTTAAAAT CCTAAagattttcttgctcgcttcgctcccAATCTATttttaccactttt caaaaGGGATACGCAGCTCTTTTCAAGAGAGAATATGCTTTTATTTTAGT TAATGTGAGTGATGCATAATGTCTTTAaagtgggaaaaatcacgatgaCA CCCCGACTTTGAGGGGGTTCCATCAAATTTGAAAGGGGGTTCCATCAAAT TTGAAAGGGGGTAGAACCTAAAGTAGGGGGGTAGTgtgacccccttccga actatAAATACTCTACTAATTATTaaccttaaaactcaaaagtttgaata tgatgttcttataaaaaaagacgtaCAGTATTGTAAAAATACGTATGTGT ATTGTAAATAAATTCCCTGTACTCAGAAAGCAAAATGATTACTTTGTTGA CCGAGTTCTACCTCCTCATATATTAATTGCCTCGTTTTCTGCTGAATAGA TAAAACGACATTTGGTATTTTCGCATAttactattttaaattttaatcta ATAGATTATGAAACAATCAGGTAATTAAAACACttactagccgtatgcgc agcgtcaCACGCTGTGAGTCCCAATTTCAATGAATCACTATACATTTAAG AAACTCTAACGAAAGAAAGATAGTATTAGGATCATATCACTctcatttta tgaaaattgccTTGAAAAACTCTGAAAGGGTTTTGAAAGTGTTTTGTGGC TCCCccacaaaaagttttgaaaagtatttgaataaaaaagcttcaaaatg aaaaagaaaaaagtgaaagttaaaatgtattggaagaaaattgattttta ccgTTCCAGTTCCCAACTTCTTATAtaaaaatctccaaattagtCTAGCG ATATAACATCTGCTTAGGGCGCGAAAAGATTTGTAGAATTTTGttaaatt ctcaacttcagttgagttagaatctgacaatgtctgcgtgtgtgtgtctg tccgaaaactttggggcaggctggagacttcaaaaatgatcggatttggc tgaaatttggcacacttgttccttgggttaATATCTgggagttttttttt cattttttgaaaattttcatttttaagggcgtggtcacgagttttcgcca aaacgaggctaaaactttggggcaggctggatacttcaaaaatggtcaga tttggttgaaaatttgcacacttgttccttgggttaATATCTGtgggtgt tttttttattttttgaaaattttcatttttaagggcgtggtcacgagttt ttgccaaaacgatgctaaaactttggggcaggctggagacttaaaaaatg atcagatttggccgaaattttgcacacttgatacttgggtgaatccctgg tggcggttttttcattttttcaaaatttccattttcaagggCATGGTCac aagttttcgccaaaacgaggctaaaacttttagGCAGGCTGGAAACTTAA AGGGAGAATCCCTGTGGGtggttttattattttataatttccattttaag ggggtggtcatgagtttttaattgaaattggttacaattttacaattggg ccgaatgatttaaaaacactgaagttgagcccagtgcggttagcacgttc gacagtttttGAAAACTGTTTACAAAATGTTTTAAACATACACGAATTAG Cgtattaaagtctgttcacgataagtgtgcactcgtttttcttttaccta taatttttaaaggaattcttcaatctttataaatttggtatcattgaaga gatatttgtgagtggaacaatttgaaataaaaaagtctttaaaaaaattc taaaaacgaagatgaaaataaggaagaaaataatgaagatcttgtagaaa agtgctataactttcattttcactggagagattctttgatcttaggaggt catcagtgtgaagaaatttcactaaaatatttattcaatataaagttatg atacaaagttaataagtgattggccccaaaaaaacagcagaaaactgCAG AAagcagcgtttttagacgtcaatcagcttataactttgtttgatatctt ttgactgaatgattatttttgagaaattttttcacagtgatggcGTTCGA TGATCagggattcacttcagtgaaaatgatagttacagcgcttttttaca aaatcttcatttttttcttcttcattttcatcttcatttttttcaaattt cttcatttttatttcaaattgttccactcgctaatatctttccaatgata ccaaatttataaagattgaagaattccttcaaaagttataggtaaaagca gaaaaaagagtgcacactaaTCGTGAATATActttaatatatagattttc tttttacaaTGGCATCTACTTCGTTTCCTTAATAATGCCCTGGGAGCACA TTGATATTTATACATGATGTCAATAAAGATATCTTTACCGTCAAGTTTAG TCCCTAATGAAGTCATTAGGTCATTATTAGCATGGGGACCACTattgctt tttgatagactgggtGGGTGGTACTGACAAGTGTCCTGGTGTAGTGTGGC AGACCTTTTTTGGCTTTGTTTAAGCACCAAACAAATCCATACCACTAGTC AATTGAGCTATTTTTTCAGCGCCTTCAAGATCATCAAGAATTCTCGTCTC GGTCATACCTGTAAGAGTTCTGTGTCCTGATGTTTGTGACTTGGGTCAAG CATTTTCCTTTATTCTCTTTCTTTTTAGTTCTCGAGGCAGAATCAGCCAT TAATTGGAGCAGCGAGTTGACCAATCAATACGGGAGTTGTTTGTACCCGC TGTGGAATCGAGCGGCCGGTGATTGTCTTCTGGACAGTGTTCTTCAAGCC ACGTGGGGTGTCTTCGATAGAGATAACGTCTTACGAAAGAAACTTCATGA ATCACTCTATGAAGGCTACAACAAGTAAGACGTCGAAAATCTTCTCTTTT TAGAGGTCTTTTAGCTTTCATTTTAAGGTAGTTAATTTTCTATATGGTTT CAAGATTTCAATGACCAGAGAAATATCTAAATAAAGAGTTCTGAACCGTT CTCGTGATCCTTACCAAAAATGATGTGTTCGTTCGTCTTTGCaaaaattt tagtccttgttaaaaatatttgtttggtagtaaaatttagaaaaatgaaa atttcccttGAAATCCTGGTTTCAGTGAGGTCAGAATTACAGACCATTCC GTTCATTTGCCATTGCTAAATGATAGATACTAGAGTATAAACAAGTTGGT TAATGGATTGTAGTTGGTCGAACCAACCGTCTTATTAGATACAAAAATGT TAACATTTTACGAAATTTTGTTCAGATTTTATCCGCGATGGAAAGAAGCG GAACAAATGCAAGCCAGTGAGATGAATTACACTTTAGACGATCAACAATG GAAAAACGATTGGACTAGCCTGGTTTCACTTGCAGCAACAGCCGGAAATA GCCTGGAACAAGCTCACGTTTTTGCATTGGCTCACATTCTACGACGACCT ATTATCATCTATGCTGTTAAATATGTAAAAGGCTTCAAAGGGGAATCGAT TGACCTGGCCAGGTTTGAAggtaatatttattttttgactgaattgTGAA TGTATAGTGTAGGTAAAGTTATTGGAGAATTCGTATTGAAAAGtagtttt tgtgaaaaaaaaacgcccctgtctcagtgacacGATGTTAATTTTTTAGC CAGTGGTGATAAAATGAAGGAGCTCGATACCAATGGTAATGGAAACTATT TTTAATTGTGTgggggggggTTAAAAGTCTATTTTTTACATCTCACAAGT CCAATACCTGAAATTATCTAAAATGTGTTAACACGTGTTAAAACATTCTT TCTTACTAGGTGTTTACCTACCGATGTTGTGGGATGAAGATTTTACGTGG AAAAATCCCATTGCTCTCGGATACACTCGTGGTCATTTCTCTGCTCTTGT TCCCATGGAGAGGCCTAATTATGCTAATTATGCCGGTGCTGGTGCACACG TGGAGTGGAATGAGGATGATGCTCACGTGACCTATCTTCCAATGGTGGAT CACGAAGGTCATCTGATGCCTGTTCATTTTTTAACCCTGGATGAGGTACC TTCTTCTTTCTATCACAATTTAAGGAGCGATGACCTATTGGCCAAAAGCG TCAGCGTTTTAAACCAAGGGTTCGTGGTTCGAATCcctgctccttccaat gttctgttcaatttagttcatagatagctgactggccgtggaccccgtga aaacaatctaaaaattgtctaaaagtcctagattactgtgCTACCCACGT AAAATATCTTTACAATATAggtattttcatgaattttcttATGATTTATA AGTACAACGATtgtctcgttttgaaaccataaCCAAGGTGATTAAAGCCT CGAGTGCTCAAGTGtttcttttataaatagagTGAACTTCTCAtagcaaa agtttgaaaaggaggtCTACTTTTCTCAAGTTTCTCAACTCGAGGAAAAT TGCCTCACAGAGGACTGGACGACTTTTAGATCGAATGACTGACCGGGACA AGCTGCAGTAATCGGGCtcagttttgttttaaaaattcactttttgtttc aaaacatcACCTAGGGCTTAAGTTTTCTTGTAATTAAATCATAAATCCAT CCAAATAGTACTTGCATTaattgatttacaaaatttctcaATCCTTCTAG GTTGGCCAAGAGGAAAAGTTACTACAGAAATATTTCGATTGTTGCATAAC GGATGGTGGAATCCTTGCAGCCAAGCAAGTGATCACACCAAGACCTCACC TCGTCAACCAAATGATCGACGAGTGGATCAATCGGTATAAGACCAAACAA CATATTGAAACGTTTGACATGCGTGGAGCTGCTAAGCAATAA

Coding sequence (CDS) from alignment at sc0000348_pilon:238247..245588+

>XLOC_043908 ID=XLOC_043908|Name=XLOC_043908|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=4254bp|location=Sequence derived from alignment at sc0000348_pilon:238247..245588+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGCCTAAAAATGAAGCAGAGTTTAAATGGACTTGTAAACAATGTACTTA
TGGCAATTGGCCATCAGCTACCAAATGTGTTATGTGTAAATTTGACCCGA
GGAATAGTATTAATAAAAACCACATTGCAGAAGGTGGAAATCATGAAAAC
AGTGAACGATGTCACGTGATCGATTGCTTAGGTGAGAGCACGTGTGAACA
TCAAGGGAGTGGAGACGAAACGAGTAGCTCCAATGAGAAAAATGGTGAAG
CATGTAGttctttgaataaaattaataaatggCCATGTTCTTTGTGTTCG
TATACAAATTGGACGAAATCTGAATTTTGTGTCATGTGCAAAACAGAGAA
ACCAAGTGAATTTAAATTAGTTGAATCATTGAGGAACATTgaaaagaatg
aagagaaaaaagagaaaaataaattctcaagTCTGACTAGAGGTCATAAA
TGGTTATGTGTGAAATGTACTTATGAGAACTGGCCAAAAGCTTTCAAATG
TGCCATTTGTCAACATCCGAAGAATAAGAGTTATAAACAAGATGACggcc
agaaaaatgaaaaaacatgtttaaatgagaagaaaactttaaaggaaaag
aaCAGTAGTTATTCAAGGAAGATTCATTCACCCAAAAGGTCACCACCCAG
GTCGCCAAATACTATTTCTAGGAATAACAGTATAAACAATATTTTCGACA
TCTCTAAACAAGACGATGATAAAATTATGGATATTGCTTTAAGTATGGAG
AAAATCACATTCCCATCGGAGAACAAACGTTTGAATCAGATTCGTAATCG
TATGCAACCAAAAGATTGGGTGTGGTTGGCAGCCTGCAAAGGAGTAGCTG
ACCATGATATCACGGCTGTATCCAATTATTTAGCTTTGGGTGGTGACCGC
GCAAGACAATTATCCAATGAAGATGTGACTGTTTTAAATCAACCAGGACG
CTTTGAGCAAGGACATACATTAGTCCACTTAGCAATACGCTTCCAACGTG
AAGATATTTTAAGGATGCTTTTATTACCAGAGACACCGCATCGTTCAAGA
AAGAGACTACCGTGTCATGAATGTCCCGAACTAGCAACTACTATACGCAA
AAATGTAGCTCATTCTATACGAAGTCGTAAAGGGGAATTTGGCTGCCCTT
TCTTTACCGAACTCGTCACCTTCTCACTGCCAGGAGATGCCTAAAAATGA
AGCAGAGTTTAAATGGACTTGTAAACAATGTACTTATGGCAATTGGCCAT
CAGCTACCAAATGTGTTATGTGTAAATTTGACCCGAGGAATAGTATTAAT
AAAAACCACATTGCAGAAGGTGGAAATCATGAAAACAGTGAACGATGTCA
CGTGATCGATTGCTTAGGTGAGAGCACGTGTGAACATCAAGGGAGTGGAG
ACGAAACGAGTAGCTCCAATGAGAAAAATGGTGAAGCATGTAGttctttg
aataaaattaataaatggCCATGTTCTTTGTGTTCGTATACAAATTGGAC
GAAATCTGAATTTTGTGTCATGTGCAAAACAGAGAAACCAAGTGAATTTA
AATTAGTTGAATCATTGAGGAACATTgaaaagaatgaagagaaaaaagag
aaaaataaattctcaagTCTGACTAGAGGTCATAAATGGTTATGTGTGAA
ATGTACTTATGAGAACTGGCCAAAAGCTTTCAAATGTGCCATTTGTCAAC
ATCCGAAGAATAAGAGTTATAAACAAGATGACggccagaaaaatgaaaaa
acatgtttaaatgagaagaaaactttaaaggaaaagaaCAGTAGTTATTC
AAGGAAGATTCATTCACCCAAAAGGTCACCACCCAGGTCGCCAAATACTA
TTTCTAGGAATAACAGTATAAACAATATTTTCGACATCTCTAAACAAGAC
GATGATAAAATTATGGATATTGCTTTAAGTATGGAGAAAATCACATTCCC
ATCGGAGAACAAACGTTTGAATCAGATTCGTAATCGTATGCAACCAAAAG
ATTGGGTGTGGTTGGCAGCCTGCAAAGGAGTAGCTGACCATGATATCACG
GCTGTATCCAATTATTTAGCTTTGGGTGGTGACCGCGCAAGACAATTATC
CAATGAAGATGTGACTGTTTTAAATCAACCAGGACGCTTTGAGCAAGGAC
ATACATTAGTCCACTTAGCAATACGCTTCCAACGTGAAGATATTTTAAGG
ATGCTTTTATTACCAGAGACACCGCATCGTTCAAGAAAGAGACTACCGTG
TCATGAATGTCCCGAACTAGCAACTACTATACGCAAAAATGTAGCTCATT
CTATACGAAGTCGTAAAGGGGAATTTGGCTGCCCTTTCTTTACCGAACTC
GTCACCTTCTCACTGCCAGGAGATATGTTGGAACTACCGAACAGTACTCG
TCATCAAATCTTCTCCGAAATACTTGATGTTGATGTCAAAAATGATATGT
TGGAACTACCGAACAGTACTCGTCATCAAATCTTCTCCGAAATACTTGAT
GTTGATGTCAAAAATGTTCTCGAGGCAGAATCAGCCATTAATTGGAGCAG
CGAGTTGACCAATCAATACGGGAGTTGTTTGTACCCGCTGTGGAATCGAG
CGGCCGGTGATTGTCTTCTGGACAGTGTTCTTCAAGCCACGTGGGGTGTC
TTCGATAGAGATAACGTCTTACGAAAGAAACTTCATGAATCACTCTATGA
AGGCTACAACAATTCTCGAGGCAGAATCAGCCATTAATTGGAGCAGCGAG
TTGACCAATCAATACGGGAGTTGTTTGTACCCGCTGTGGAATCGAGCGGC
CGGTGATTGTCTTCTGGACAGTGTTCTTCAAGCCACGTGGGGTGTCTTCG
ATAGAGATAACGTCTTACGAAAGAAACTTCATGAATCACTCTATGAAGGC
TACAACAAATTTTATCCGCGATGGAAAGAAGCGGAACAAATGCAAGCCAG
TGAGATGAATTACACTTTAGACGATCAACAATGGAAAAACGATTGGACTA
GCCTGGTTTCACTTGCAGCAACAGCCGGAAATAGCCTGGAACAAGCTCAC
GTTTTTGCATTGGCTCACATTCTACGACGACCTATTATCATCTATGCTGT
TAAATATGTAAAAGGCTTCAAAGGGGAATCGATTGACCTGGCCAGGTTTG
AAgATTTTATCCGCGATGGAAAGAAGCGGAACAAATGCAAGCCAGTGAGA
TGAATTACACTTTAGACGATCAACAATGGAAAAACGATTGGACTAGCCTG
GTTTCACTTGCAGCAACAGCCGGAAATAGCCTGGAACAAGCTCACGTTTT
TGCATTGGCTCACATTCTACGACGACCTATTATCATCTATGCTGTTAAAT
ATGTAAAAGGCTTCAAAGGGGAATCGATTGACCTGGCCAGGTTTGAAgGT
GTTTACCTACCGATGTTGTGGGATGAAGATTTTACGTGGAAAAATCCCAT
TGCTCTCGGATACACTCGTGGTCATTTCTCTGCTCTTGTTCCCATGGAGA
GGCCTAATTATGCTAATTATGCCGGTGCTGGTGCACACGTGGAGTGGAAT
GAGGATGATGCTCACGTGACCTATCTTCCAATGGTGGATCACGAAGGTCA
TCTGATGCCTGTTCATTTTTTAACCCTGGATGAGGTGTTTACCTACCGAT
GTTGTGGGATGAAGATTTTACGTGGAAAAATCCCATTGCTCTCGGATACA
CTCGTGGTCATTTCTCTGCTCTTGTTCCCATGGAGAGGCCTAATTATGCT
AATTATGCCGGTGCTGGTGCACACGTGGAGTGGAATGAGGATGATGCTCA
CGTGACCTATCTTCCAATGGTGGATCACGAAGGTCATCTGATGCCTGTTC
ATTTTTTAACCCTGGATGAGGTTGGCCAAGAGGAAAAGTTACTACAGAAA
TATTTCGATTGTTGCATAACGGATGGTGGAATCCTTGCAGCCAAGCAAGT
GATCACACCAAGACCTCACCTCGTCAACCAAATGATCGACGAGTGGATCA
ATCGGTATAAGACCAAACAACATATTGAAACGTTTGACATGCGTGGAGCT
GCTAAGCAATAAGTTGGCCAAGAGGAAAAGTTACTACAGAAATATTTCGA
TTGTTGCATAACGGATGGTGGAATCCTTGCAGCCAAGCAAGTGATCACAC
CAAGACCTCACCTCGTCAACCAAATGATCGACGAGTGGATCAATCGGTAT
AAGACCAAACAACATATTGAAACGTTTGACATGCGTGGAGCTGCTAAGCA
ATAA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
XLOC_043908XLOC_043908-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000348_pilongenomesc0000348_pilon:238247..245588 +
Properties
Property NameValue
Aaloc1936-2127:7151
Aaloc1702-1935:6312
Aaloc1456-1698:5777
Aaloc1261-1452:5181
Aaloc1189-1257:1360
Aaloc1-1185:1