XLOC_043729 (mRNA) -

Overview
NameXLOC_043729
Unique NameXLOC_043729
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000526_pilon:97444..101216+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_043729 ID=XLOC_043729|Name=XLOC_043729|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=3773bp|location=Sequence derived from alignment at sc0000526_pilon:97444..101216+ (Clytia hemisphaerica_ch_hm2_pilon)
AGCACTGTCAACAACAAAGGTGAGATACTTCGTTTATCTAACTCATATTT
TACCTAGTCTTATAcatttacacccctttctcacagccctgttatgaatt
ttttcagtcaacggggataaaaaaacgtactgaaactcgatggggattaa
taTTCACATAGTTTTTATGGCTagagatttcaattcttttgttttcaagt
cataaacttcagtggggatgggaaaaatggtAAATATTTATTtcgcagtg
aggattggtttgtttgattattttcactgggaacgatattttggccaatt
cttccagtgggaaggggttctagtgggtctgtgaaaagggggtgtacATT
TATGCTGTCTCAAGGTGCGTTAGTCAACAAGTTTGAAAAACCATAGTCTT
ATAAAAAATCCACGGTTTGGGAGTCTTTTATTTCTTTCTAACaacccctt
ttcacagacctgTTAGgattttttagccagtgggggtGAAATTAACGGAT
TCAAACGGAATTGAGATTGATGTTCCTATGTTTTTTATGAATTCCATTGT
CTGTTTTCAAGGCAGAAAaatcagtggggatggaaaaaaagcacaatatt
ttatagtgaggatttgtttatttgattactttcaGCGGCGACAAAAATCG
gggtataattttccattgggaacgatattttggcttATCTTTCCTGTCAg
agggggtcccaccgggtctgtgagaaacaGGTGTATCTTATCATTGAATT
AAAAAGTTCAAATCAATCTTTTAACTATTGTTTcactgaaaaactgaaaa
ctggtttctacaaaacatcactgctagggagAAAACTATAGAtagcgtac
tttcaacacaaaaagtttcagcctcaaatagaccttatcggagttttaga
tttttctaaaaaagcaataCATTGtaggattgtttcgagtgtattacaat
agaaatctcttaggaattcctggagggaattatattgtaatgatatgcgt
aagtcaagatgacgtatatttttaacggaagcacccgaaaaaGCCGGTTT
atgacctctgtgtttctatttttagtaacagagagggttcgaatcccggc
ttttttagggtgtttccgctagaaaaatgacttacgcatatcaagaatac
actcgaaacaatgcatcgcttttttagaaaaatcaaaactccgataaggt
ctatttacctaaattttcagatagagggtacctttttttgtaggttttaa
atGGTATCCATACTGGTAATAGTATTATTCTCTTTCAGTTGAGTATGGTT
ACGTTAGAATGGTAAAGCACGATAACCACATTCTCAATGTGACAGCAATC
AACATATCATACCACAAAACTTCCCAAGAATGCATTCGAACTTGTCTCAA
TTTTACAAATTGTTGGAGCATCAATTTGAAGAAACAGCAAAATAATGAGA
TTTACGAATGTCATATTTTGGATACTGATCGATTTCGAAAcgcgtcaaat
tttgtttcttcctCTACAGgaaattctcatttttctcttgatgtgagtaa
aataataaaataacaaaCTAGTTCCCAGTCCTTTTGATGTGCTAACGtca
tcagtaaaataaaaaagtaaaagaattttATAATGACAGGGAATGACCCA
CCTTTTATACTAGAACCGAAATTCCACCGGGGTAATCATAAAGTTTTTTA
TGGTCCAAAGTTTTTGGAAGTTTTGACTACTTTAAGCAAATAAGCCGACA
TTTCCTCACCAGTAGGAACAGACTTCTGTCATTTTCTTGgtaaaaacttt
ctttgttattttttacaGCATGATTGTGAATGGGAGGAGACATGCATCAA
CCCAAACAAAATATGTATTCCAAACTACTCTGATGGTTCTTATAAATGTG
TTTGCGAGCCTATTGGTAAATACGACATTCATTGCATAAGTAAGTATTTT
CAATGAGATAAAATGAATTAAGGCTATAAGATTccgaaaatgtaaatttt
tttgacaattttaagATGAACAGTAAGATTCAGTATAgaacaaatttatt
tcaatttttgaaaaaagcactCTCCCATTTTGCTATTACGAGATTCGGTA
GTTTGTGTGCTTTGACTCAAGATCTTTGTACCAGTTGTCATGCATACTTT
GCTCTCTGATGAATTAAACCTTCCCCTGCAATAATCATACACTGTGATAT
GATATTCATGGTATGAGATTGACAAATGGTACAAAATTTTCGATCTACAG
TTACGTAATGGATTTCTAATTAGGATAAGGATATGTGTATTATGTTCTGA
GATTACTTGATttcaccatgaacatataaacgactggacatccatctcct
ttctctttttaaagataacacagctagcttcgttgccgcctcgttaaaaa
cataaaatgaaacaatagattttgatgatataccacttgggaataccttg
ctaacaacgtcaaaacttcgacaaaagtctctgttgttctactcttttca
agtcttttatctatatcataacaaagataacagaggcaaattatcgtcag
cttgtcaaaattccgactaatatttctaaattttgacttaaaagtgtcta
ataattttagagagtgtctaatttcgatattcttattacaaAGGCTCTCA
ACtatggcaagctattttttcaagtcataaaaaaaattattggagtgaca
aaagggattaaaaagtatacaggcagttgaaattctgcatttcagagttg
aaaatgttgataaagtatattacaaacttgtaaaaaaattcgaaaataac
cTTTTTGTACATTatgagtaatgttcaagctctatcaatctttttaccta
aataattcaatacaaaataaactATGACGGAATATtctcggatttttcat
accaattttgaaatacaggcggcaatgaagctcgcttcaaagagacaata
aaagatagatgtccagtcgtttgtATGTTCATGATTTCACtgaatctttc
cttgatttgatTTCTACAAACTGTTTTCATCCAAGAACTTGGATGATTGT
TATGGCTAATTTTCTTGTGGGATGAGTGAAATGGGTTTGATTGAAGGGTT
TCAAGGAAATAGAGGAAAAGTAGCTCAGGGATACAAAAACTATTTTACTC
GGTTTTCACAGCTCACAATCCAACCCTTActccgtgtatcccaggcttta
tttatgttCCTGATGGACGCTAGAGCGTACGTATATTATCTGgagctatc
agtaagcatcaataAGCCGATAATGATACACTGTTTGTTCACGATCACCA
ATATATATTTCTTTTCAGACAGAAACATTGCATTTCAAAGACCAGTCAGT
TTATCGGGACTAGAACCGAATTCTGGGAAACCCGCGTTTGTTACCGATGG
TTATAAAGGAGAAATATGTGGTGATCTGTCAACCAAACTTGTCCACTCGA
AAATGGGAACTATGGAAATTTGGCTGAGAATTGATTTGGGTGGAatgaaa
caaattaaatttattgatattttcGATCGTACAATAGGAGCACCTCATCA
TCAACGACTTGCTTTTACAGATATTATTGTGTATGGTCAAAATCCTGTTG
ATAATCGTCAGCTTTGCAGTACTATAACATTGCAAGATACTGAAAATGGT
GATAAGGTTTTTAAAGTTTGTAACGAGGTCTTGACTGGGAGTGGAGTTGA
GTTATACAAGGCCCCAAATGGGTGGCAAATGATACATCTTTGTGAAATAG
CTGTGTACGGACCTACAAATTGA

Coding sequence (CDS) from alignment at sc0000526_pilon:97444..101216+

>XLOC_043729 ID=XLOC_043729|Name=XLOC_043729|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=1698bp|location=Sequence derived from alignment at sc0000526_pilon:97444..101216+ (Clytia hemisphaerica_ch_hm2_pilon)
AGCACTGTCAACAACAAAGAGCACTGTCAACAACAAAGTTGAGTATGGTT
ACGTTAGAATGGTAAAGCACGATAACCACATTCTCAATGTGACAGCAATC
AACATATCATACCACAAAACTTCCCAAGAATGCATTCGAACTTGTCTCAA
TTTTACAAATTGTTGGAGCATCAATTTGAAGAAACAGCAAAATAATGAGA
TTTACGAATGTCATATTTTGGATACTGATCGATTTCGAAAcgcgtcaaat
tttgtttcttcctCTACAGgaaattctcatttttctcttgatTTGAGTAT
GGTTACGTTAGAATGGTAAAGCACGATAACCACATTCTCAATGTGACAGC
AATCAACATATCATACCACAAAACTTCCCAAGAATGCATTCGAACTTGTC
TCAATTTTACAAATTGTTGGAGCATCAATTTGAAGAAACAGCAAAATAAT
GAGATTTACGAATGTCATATTTTGGATACTGATCGATTTCGAAAcgcgtc
aaattttgtttcttcctCTACAGgaaattctcatttttctcttgatCATG
ATTGTGAATGGGAGGAGACATGCATCAACCCAAACAAAATATGTATTCCA
AACTACTCTGATGGTTCTTATAAATGTGTTTGCGAGCCTATTGGTAAATA
CGACATTCATTGCATAACATGATTGTGAATGGGAGGAGACATGCATCAAC
CCAAACAAAATATGTATTCCAAACTACTCTGATGGTTCTTATAAATGTGT
TTGCGAGCCTATTGGTAAATACGACATTCATTGCATAAACAGAAACATTG
CATTTCAAAGACCAGTCAGTTTATCGGGACTAGAACCGAATTCTGGGAAA
CCCGCGTTTGTTACCGATGGTTATAAAGGAGAAATATGTGGTGATCTGTC
AACCAAACTTGTCCACTCGAAAATGGGAACTATGGAAATTTGGCTGAGAA
TTGATTTGGGTGGAatgaaacaaattaaatttattgatattttcGATCGT
ACAATAGGAGCACCTCATCATCAACGACTTGCTTTTACAGATATTATTGT
GTATGGTCAAAATCCTGTTGATAATCGTCAGCTTTGCAGTACTATAACAT
TGCAAGATACTGAAAATGGTGATAAGGTTTTTAAAGTTTGTAACGAGGTC
TTGACTGGGAGTGGAGTTGAGTTATACAAGGCCCCAAATGGGTGGCAAAT
GATACATCTTTGTGAAATAGCTGTGTACGGACCTACAAATTGAACAGAAA
CATTGCATTTCAAAGACCAGTCAGTTTATCGGGACTAGAACCGAATTCTG
GGAAACCCGCGTTTGTTACCGATGGTTATAAAGGAGAAATATGTGGTGAT
CTGTCAACCAAACTTGTCCACTCGAAAATGGGAACTATGGAAATTTGGCT
GAGAATTGATTTGGGTGGAatgaaacaaattaaatttattgatattttcG
ATCGTACAATAGGAGCACCTCATCATCAACGACTTGCTTTTACAGATATT
ATTGTGTATGGTCAAAATCCTGTTGATAATCGTCAGCTTTGCAGTACTAT
AACATTGCAAGATACTGAAAATGGTGATAAGGTTTTTAAAGTTTGTAACG
AGGTCTTGACTGGGAGTGGAGTTGAGTTATACAAGGCCCCAAATGGGTGG
CAAATGATACATCTTTGTGAAATAGCTGTGTACGGACCTACAAATTGA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
XLOC_043729XLOC_043729-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000526_pilongenomesc0000526_pilon:97444..101216 +
Properties
Property NameValue
Aaloc397-849:3321
Aaloc274-393:1819
Aaloc22-273:1291
Aaloc1-18:1