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Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000044_pilon:598844..604789+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >XLOC_043418 ID=XLOC_043418|Name=XLOC_043418|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=5946bp|location=Sequence derived from alignment at sc0000044_pilon:598844..604789+ (Clytia hemisphaerica_ch_hm2_pilon)
GATCCAAATTATCCTTCGAAGAATTTGCTCAAATCCGGAAAATGGTTATG
TGATAGAAACAATCCTCATCAATCGGCTGAAGTTGAAATATCTTTTTCAA
GAGCAACAACAATTCACTTCATTGATATAGGTAAGATGACTTGCACATTA
GACAAGGTGGAACTTTtcacattgttttttttaaatggcagAAAGGTAAC
AACTGGCTTTGTTTAAcactgaaatatttcaaaacactCCTGAACATTCT
CTCAAGCTTTGGACAAAAACTAAATGTTATTAAACTGATTgagtatttga
aaatttattttaatctATTTATAGGGAACAGTGGTAGCTGTTATGTAGAT
ATCTTAGTACGTCATTCTCTGAAAGGAAATGACTTCAAAAGTCTAATACC
AACTTTCACATTCATGTCTGTGCCAGAAAGTAAATCAGGGGAAAATAAAT
GTAAAGTTGAAATGTTCAAACAaggtaaatttgatttttttatcaatgtt
ttAATCAGATCTTACATTTAGGATAAAGATCCTATCTGTTTATTCTCTCA
ATGTTTTTCCCTTAGGATCAAAGTCATCTTGTTTTCTCAgttatattttt
gtatttttatttttctgtgaCAACGTGCCTTTTCTCAAATTACTAAGAAT
TTGTGGTAATAaagcctttttagtggaaaaagaACCTGTTTTTGCCAACA
Actagatatttttaaaaatatgacctggaaaaaaaaaatcaaaagtctat
aattaataaattttagATAGAATGATGGCTGATGTCAGAGATGAAAAATG
GGATGTCCTGAAGATAGTGTGCCGCCAACCATACAAACCCAATGCTCAAT
ATGGCATCAGCTTTGTTAATGTAAGGGGATGTAGTTCTGGAACTAATCAA
GcaaaagatgtaaaagcaaagcCTCCTCAACCGTCAAATCAATCTGCACT
AAATTCGTTTTTCGGATTTAATAACACTGGGTGAGTTTTCTGATTCAATT
TAATTGATTCAACAATTTTTCATCTGTGATGATCATAAAGAAGCTTGCTT
CACTTTGCTGTATCTTTATAATgatgtctttttttttgctcattggCAAT
TATTCTAGACACGAGATAATGCTCAAAGATTTGAAGCAAAAGAACTTGTA
AATGAATGGTGTTTTTCTTGTTGAAAAGCAGTTATTGTTCTATGTGAAAC
AAGAAATCTAGTtattcttttaaacaaaaccAGTTATCATCTTTTTCCTT
GTTATTTAAGTCTGGTCTCCCCAAAGCCTGGAAAAACACTGGCATTGAAA
TCTAAATCACCTATACTGAAATCACCTCATCAAGTTATGTTGACAAAGAC
AAAAGGTATGTTTATTGAAATTATTCTTCAGCATAGTTTTCATggttctt
tattatttttttaaatacttgaATTTAAATTTCGCACACAATTCCTGATG
CATAAACtgtataacatttttttatcatttagtTACAAATGAAATTCAAG
AAAGCCCAACCAAATATTTGTCAGAAAAGTTGAAGGTTTGTTTATTACTT
TCTTATCCTTTGTTCACTGCTTGTATACTTTTTgcacctacctggaggtc
ctttaatttgaccgttgtccgtccgtccgtccgttcgtctgttacaagct
tttctcgggactggctcattagtttttttcatttgtagCACAGTaatgca
aaatagcaatgcctaaaaagtgacggagcccgatttttgaaaaaaaaatt
tgggggcaaatttgggccaaaactgcctaaaaatagggttttttggattt
tgtgcaaaattgcttcattagtttttcctgatatttggcagaaagataga
gtgctaggtggcctaaaatgtggctgatgtgATTTTTCCCTTTAGTCGTT
TTGAGGGAAAATGGCGATTGGTGTggtaatagaaaaaaataattctaatt
tttttaacataaaGATAGAGGGAAAGGTTTTCCGCAAtttttttCTTGCA
GTAAAATTCCGATTTTCTTATTTGTTGAAACAAAAATACCCTTCAGTAAA
TTTATGGGGAAATGAGTATTTCTCGCGATTGGCTTGGtattattttctga
tttttagttTGTCTGACTATTGTTGCcattattctattttttttattaca
ctATAGCctttaggtaggtccattcagcatgtagcttgtttttcGTTTAT
TCCTTAATGAATAGAATCAacagaaatattgaaaaatgaagacatcATGA
AATACTAggttgattttaatatttttgtataaTAATTGAGCAAACTTtca
atattacaattttagttccTCAATGATGCAGAAGAGTTTTTGTATAGAGC
TGGTTTTGATGAAGCCATCAAATTGGGGAAGCCAATCCTAATGGCAGGTA
CTCCCAAATTTCATGAACTGTTATACTTCGAAAATTACTCAAACTAGATT
ATTATTTTATCCTTGCggaaaaaattcataaagattGCTGtttttttCTG
ATAACACCTACCTTTTATACataccccagctggcacacaacgttctttta
acgtttatctaacgttcataacgtccacaagggggggcacgcagttacta
caagacagtatgacacttactaccgtggtggtgctgtattcagaagttat
gaaaacagttactacacagtgtagtaactgctgtttgggggtggtgccaa
acactaacgctagcacttttggtgtagtaagtgcttatatattttaattc
tttttaaagaactttcaaaatttttcaccaaaaatgaatttttttgtgaa
aaaattctttgttaaaaaaaatatttttgttataaatggacgaaaaaaaa
tttgaaatttttctcagacccagctttgaaattatgctttccctaattat
cattgaaatgttctcaacagctgttagccaagtaaattaaaagaaaatct
agcacaaaaatggctttaggttgaaaaataatcgcaatttagggtaattt
cgagcatgtttttgatgatatcactccaaaacaggggtggtacctggaaa
tcttttctgaaaacagttactaccaaggtgtagtaactgcaaagggtggt
ggtcctgaaaaaaagtgttgaaaaagcacttactacacatcatgtcttgt
agtaactgcgtacccccccccTGACGTCCATGTAAttttagatgaacgtt
gaaacaacattgtttgCCAACTGGGACTTAAGATTAGATTTTTCCTGGAA
TGActgtttttaaccaaaattgttATTCTCTTTAGAATACAgagaaatga
ttgaaaaagaacGAGGACAAAAATTGTCAAGGCAGCAAAAGAAACTTCTT
GTATATGTAGGTATTACTTATTTACATCTTGCTCCTGTCTTTATTGATAA
ACAATCAGATTTTCActaatccaatttttcttctttagattGCTActgaa
atgaagaaaactttacAAGCAGAGAAAAACAATGCTAAggtaatatttta
aaaacttaataTATAAcaagtttttacaattttttttattaaaaagtaaa
tGAATGCAAAGGTCAATCCTCTGTGATTCACACCTCTACTATTCAAATTA
ATCTTCCTAATAGAAAATCAgcccaaatttgagtcttgtcataatataaa
aaaaatttgcttcgtgaagtttgaattagagaaagtcaacTGTATCAGCA
AAGATATAAAGGGCTGAGAATGACAAACCATTTGTCGAAATGAATAACTT
CATGGTCATTTTGAGTGTATCATACAGAAAAATCTCTTTCTACAGAATTC
TTTATGTTTCCTCTCTTCTCGGGTAATAACATCACTTTTCGTTAGAATTC
TGACTTTGGCTGATTAATAGGCATAAATTACACGCCATTGTAGAGTACCt
ttagggaagaaatttttgcggaacaaatttttgcagaatttaattttgcg
gttttttgacaaatccgtATCACAAATAATCTCTGGATTTAAAAAACCAC
CTCTGAAATATgccattttgtaaacaaaaaattctctcaaccgcaaaatt
aaattcaacgAAActaaattttgagctgtgaatcacaaaaatttcttccc
ttcaaaaatttcttctcttataTAGGTACTTTTAATTATGTTTTCAGATT
TCATCAACTCCACCAAATATGAATAGTCTTGAACGAAAATGTACAAAATG
CGAAGTCAGGTAGTAGATAAATAATCCAGAAactcaaaagaaaataaaag
aaatttactATTCACTTTAAGGATTCACCTTATGAAACTCACTTAAAGAG
GACTTaaaaaaaTTGAGCTGGTATATGTTTAACCGAATAATTATTTTATA
GTAAGTCAAACatgtttttcaatcaaaaactGAATCTCGGGTAAATAAAC
CAACAACTAACCCTTAGAATGACTAATTGTGCAAAACCAAGAAACAATAA
AGTTAATCTTaacttattttactttttttagtttttcaatcGAAGTTATG
GAAATCCATGAGCAAATCTGTACAGCGACTCCCAGGACTAAACCAAGACA
AAATCGAAAATCCATATGTTTTGATTATACCATGTCAGATGAGGATCAAT
CAATACAAAGTTTCAATAAAAGAACACCATCAATGTCAGCAAAATTAACA
TCTGCTGGTGAAACTTCAGCTTCATCAGCATCCTCTAGCCCTGAATCTCG
TTGGTATGATAAAACAATACCTAAAAGCTCTGGGTCAAATATTACAACAA
CACCAAAAAGCTTTGGATCTAACAGTGCATTTGAACCCAAAAGCTCAAGT
TCTACAGCTACAATAACATTGAAATCCTCCTCAAAACTATTTGCACGTAA
ACGGTCAGGATCTACTAGTAAGGCAGCTAAAGCTAAATTACCGGAACCTG
TTAATTTACCAATTATCAATACACATGCGTCCAAAACATCATCCTTAAGC
AGTACAAAAACTGGACGTGATTCTCCAATCTCAAAGAAGCTATTTCTCGA
TCACAACCAAAACGAAAATGTAAAATCTAATAACAATAGTGATAATTTCT
TTGATGACATGAATCTCAGTGACTTTGAGGATGATACTACTAATAACGAT
GATGATTTAGTTGTTACAAAAGACACAAATTTCAAAAGGGACAATTTTCA
GAACTCTATTTCTATAaatgatgatgacgatgatatCATAATTTCCAAAG
AAAAGAATAACTCACATAATACACAATATGTTGAATGCCCAATGTGTTTT
GAACTCATGAGTACCACTATTATTGAACTACATGCTTCTACGTGTAATGG
AAAAACAGAGACAACaccacaaactttcaataataaaCCAAGCTCAAATG
CATTTGCAGCTACTCCATATCTTTCAAGTGTCAATAGACAAGCAAACAAG
ATGGGTTCTAATGCATCTACAGTGAGTCCGAATCTTTCAACAACTAACGG
TTCATTGGAGAATCACCAACACCAAGGCGATACTCAAGAATGTCCTGTCT
GTAACAAACAAATCAATAAATATAAAATTGCTGTCCATGTTGTTTTGTGT
ACTGGTAAGGGTCTGGATAATGATAAAGAAGATGATGACCTACCATCCAT
TTTCAACAGAAAATCTTCTAGTACTTCCGCAACGAAAACAAAGACTTCTA
AAAAGTCTTCTTCTACTAATGCTAGTCCCTCCCCTTCAGGGGCTCATAAC
AATGTGATGAGTGTTATGCACAAGCCTTCAGGGAGCCACGATGCAATGAA
CACTTTCCAAAATACAAACAACACTGGTGCCAGTTATAATCCTTCGGGAG
CTCATAATACACCAACTAATAGTATACTAGTTCCTGACCATGATTATGGG
AAAAGAGAGGAAGCTTCTTGTCCCATATGCTCAATAACATTGGATAAGAG
TATGATTGAAGTACATGTTAATATGTGTTTAGACAGATTGCAATGA Coding sequence (CDS) from alignment at sc0000044_pilon:598844..604789+ >XLOC_043418 ID=XLOC_043418|Name=XLOC_043418|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=4620bp|location=Sequence derived from alignment at sc0000044_pilon:598844..604789+ (Clytia hemisphaerica_ch_hm2_pilon)
GATCCAAATTATCCTTCGAAGAATTTGCTCAAATCCGGAAAATGGTTATG
TGATAGAAACAATCCTCATCAATCGGCTGAAGTTGAAATATCTTTTTCAA
GAGCAACAACAATTCACTTCATTGATATAGGATCCAAATTATCCTTCGAA
GAATTTGCTCAAATCCGGAAAATGGTTATGTGATAGAAACAATCCTCATC
AATCGGCTGAAGTTGAAATATCTTTTTCAAGAGCAACAACAATTCACTTC
ATTGATATAGGGAACAGTGGTAGCTGTTATGTAGATATCTTAGTACGTCA
TTCTCTGAAAGGAAATGACTTCAAAAGTCTAATACCAACTTTCACATTCA
TGTCTGTGCCAGAAAGTAAATCAGGGGAAAATAAATGTAAAGTTGAAATG
TTCAAACAagGGAACAGTGGTAGCTGTTATGTAGATATCTTAGTACGTCA
TTCTCTGAAAGGAAATGACTTCAAAAGTCTAATACCAACTTTCACATTCA
TGTCTGTGCCAGAAAGTAAATCAGGGGAAAATAAATGTAAAGTTGAAATG
TTCAAACAagATAGAATGATGGCTGATGTCAGAGATGAAAAATGGGATGT
CCTGAAGATAGTGTGCCGCCAACCATACAAACCCAATGCTCAATATGGCA
TCAGCTTTGTTAATGTAAGGGGATGTAGTTCTGGAACTAATCAAGcaaaa
gatgtaaaagcaaagcCTCCTCAACCGTCAAATCAATCTGCACTAAATTC
GTTTTTCGGATTTAATAACACTGGATAGAATGATGGCTGATGTCAGAGAT
GAAAAATGGGATGTCCTGAAGATAGTGTGCCGCCAACCATACAAACCCAA
TGCTCAATATGGCATCAGCTTTGTTAATGTAAGGGGATGTAGTTCTGGAA
CTAATCAAGcaaaagatgtaaaagcaaagcCTCCTCAACCGTCAAATCAA
TCTGCACTAAATTCGTTTTTCGGATTTAATAACACTGGTCTGGTCTCCCC
AAAGCCTGGAAAAACACTGGCATTGAAATCTAAATCACCTATACTGAAAT
CACCTCATCAAGTTATGTTGACAAAGACAAAAGTCTGGTCTCCCCAAAGC
CTGGAAAAACACTGGCATTGAAATCTAAATCACCTATACTGAAATCACCT
CATCAAGTTATGTTGACAAAGACAAAAGtTACAAATGAAATTCAAGAAAG
CCCAACCAAATATTTGTCAGAAAAGTTGAAGtTACAAATGAAATTCAAGA
AAGCCCAACCAAATATTTGTCAGAAAAGTTGAAGttccTCAATGATGCAG
AAGAGTTTTTGTATAGAGCTGGTTTTGATGAAGCCATCAAATTGGGGAAG
CCAATCCTAATGGCAGttccTCAATGATGCAGAAGAGTTTTTGTATAGAG
CTGGTTTTGATGAAGCCATCAAATTGGGGAAGCCAATCCTAATGGCAGAA
TACAgagaaatgattgaaaaagaacGAGGACAAAAATTGTCAAGGCAGCA
AAAGAAACTTCTTGTATATAATACAgagaaatgattgaaaaagaacGAGG
ACAAAAATTGTCAAGGCAGCAAAAGAAACTTCTTGTATATattGCTActg
aaatgaagaaaactttacAAGCAGAGAAAAACAATGCTAAgattGCTAct
gaaatgaagaaaactttacAAGCAGAGAAAAACAATGCTAAgATTTCATC
AACTCCACCAAATATGAATAGTCTTGAACGAAAATGTACAAAATGCGAAG
TCAGATTTCATCAACTCCACCAAATATGAATAGTCTTGAACGAAAATGTA
CAAAATGCGAAGTCAGtttttcaatcGAAGTTATGGAAATCCATGAGCAA
ATCTGTACAGCGACTCCCAGGACTAAACCAAGACAAAATCGAAAATCCAT
ATGTTTTGATTATACCATGTCAGATGAGGATCAATCAATACAAAGTTTCA
ATAAAAGAACACCATCAATGTCAGCAAAATTAACATCTGCTGGTGAAACT
TCAGCTTCATCAGCATCCTCTAGCCCTGAATCTCGTTGGTATGATAAAAC
AATACCTAAAAGCTCTGGGTCAAATATTACAACAACACCAAAAAGCTTTG
GATCTAACAtttttcaatcGAAGTTATGGAAATCCATGAGCAAATCTGTA
CAGCGACTCCCAGGACTAAACCAAGACAAAATCGAAAATCCATATGTTTT
GATTATACCATGTCAGATGAGGATCAATCAATACAAAGTTTCAATAAAAG
AACACCATCAATGTCAGCAAAATTAACATCTGCTGGTGAAACTTCAGCTT
CATCAGCATCCTCTAGCCCTGAATCTCGTTGGTATGATAAAACAATACCT
AAAAGCTCTGGGTCAAATATTACAACAACACCAAAAAGCTTTGGATCTAA
CACTACAATAACATTGAAATCCTCCTCAAAACTATTTGCACGTAAACGGT
CAGGATCTACTAGTAAGGCAGCTAAAGCTAAATTACCGGAACCTGTTAAT
TTACCAATTATCAATACACATGCGTCCAAAACATCATCCTTAAGCAGTAC
AAAAACTGGACGTGATTCTCCAATCTCAAAGAAGCTATTTCTCGATCACA
ACCAAAACGAAAATGTAAAATCTAATAACAATAGTGATAATTTCTTTGAT
GACATGAATCTCACTACAATAACATTGAAATCCTCCTCAAAACTATTTGC
ACGTAAACGGTCAGGATCTACTAGTAAGGCAGCTAAAGCTAAATTACCGG
AACCTGTTAATTTACCAATTATCAATACACATGCGTCCAAAACATCATCC
TTAAGCAGTACAAAAACTGGACGTGATTCTCCAATCTCAAAGAAGCTATT
TCTCGATCACAACCAAAACGAAAATGTAAAATCTAATAACAATAGTGATA
ATTTCTTTGATGACATGAATCTCAATGATGATTTAGTTGTTACAAAAGAC
ACAAATTTCAAAAGGGACAATTTTCAGAACTCTATTTCTATAaatgatga
tgacgatgatatCATAATTTCCAAAGAAAAGAATAACTCACATAATACAC
AATATGTTGAATGCCCAATGTGTTTTGAACTCATGAGTACCACTATTATT
GAACTACATGCTTCTACGTGTAATGGAAAAACAGAGACAACaccacaaac
tttcaataataaaCCAAGCTCAAATGCATTTGCAGCTACTCCATATCTTT
CAAGTGTCAATAGACAAGCAAACAAGATGGGTTCTAATGCATCTACAGTG
AGTCCGAATCTTTCAACAACTAACGGTTCATTGGAGAATCACCAACACCA
AGGCGATACTCAAGAATGTCCTGTCTGTAACAAACAAATCAATAAATATA
AAATTGCTGTCCATGTTGTTTTGTGTACTGGTAAGGGTCTGGATAATGAT
AAAGAAGATGATGACCTACCATCCATTTTCAACAGAAAATCTTCTAGTAC
TTCCGCAACGAAAACAAAGACTTCTAAAAAGTCTTCTTCTACTAATGCTA
GTCCCTCCCCTTCAGGGGCTCATAACAATGTGATGAGTGTTATGCACAAG
CCTTCAGGGAGCCACGATGCAATGAACACTTTCCAAAATACAAACAACAC
TGGTGCCAGTTATAATCCTTCGGGAGCTCATAATACACCAACTAATAGTA
TACTAGTTCCTGACCATGATTATGGGAAAAGAGAGGAAGCTTCTTGTCCC
ATATGCTCAATAACATTGGATAAGAGTATGATTGAAGTACATGTTAATAT
GTGTTTAGACAGATTGCAATGAATGATGATTTAGTTGTTACAAAAGACAC
AAATTTCAAAAGGGACAATTTTCAGAACTCTATTTCTATAaatgatgatg
acgatgatatCATAATTTCCAAAGAAAAGAATAACTCACATAATACACAA
TATGTTGAATGCCCAATGTGTTTTGAACTCATGAGTACCACTATTATTGA
ACTACATGCTTCTACGTGTAATGGAAAAACAGAGACAACaccacaaactt
tcaataataaaCCAAGCTCAAATGCATTTGCAGCTACTCCATATCTTTCA
AGTGTCAATAGACAAGCAAACAAGATGGGTTCTAATGCATCTACAGTGAG
TCCGAATCTTTCAACAACTAACGGTTCATTGGAGAATCACCAACACCAAG
GCGATACTCAAGAATGTCCTGTCTGTAACAAACAAATCAATAAATATAAA
ATTGCTGTCCATGTTGTTTTGTGTACTGGTAAGGGTCTGGATAATGATAA
AGAAGATGATGACCTACCATCCATTTTCAACAGAAAATCTTCTAGTACTT
CCGCAACGAAAACAAAGACTTCTAAAAAGTCTTCTTCTACTAATGCTAGT
CCCTCCCCTTCAGGGGCTCATAACAATGTGATGAGTGTTATGCACAAGCC
TTCAGGGAGCCACGATGCAATGAACACTTTCCAAAATACAAACAACACTG
GTGCCAGTTATAATCCTTCGGGAGCTCATAATACACCAACTAATAGTATA
CTAGTTCCTGACCATGATTATGGGAAAAGAGAGGAAGCTTCTTGTCCCAT
ATGCTCAATAACATTGGATAAGAGTATGATTGAAGTACATGTTAATATGT
GTTTAGACAGATTGCAATGA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000044_pilon | genome | sc0000044_pilon:598844..604789 + |
Properties
| Property Name | Value |
|---|
| Aaloc | 2068-2313:5701 |
| Aaloc | 1471-2067:5101 |
| Aaloc | 1339-1467:4939 |
| Aaloc | 1204-1332:4810 |
| Aaloc | 910-1200:4483 |
| Aaloc | 847-906:4148 |
| Aaloc | 796-846:3439 |
| Aaloc | 727-795:3288 |
| Aaloc | 643-723:2316 |
| Aaloc | 592-642:1485 |
| Aaloc | 496-588:1262 |
| Aaloc | 283-492:769 |
| Aaloc | 133-279:327 |
| Aaloc | 1-129:1 |
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