XLOC_043223 (mRNA) -

Overview
NameXLOC_043223
Unique NameXLOC_043223
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000072_pilon:130612..140628+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_043223 ID=XLOC_043223|Name=XLOC_043223|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=10017bp|location=Sequence derived from alignment at sc0000072_pilon:130612..140628+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGAGTGACGATGAAGGACCTAAAAAAGCAAAGATACCAAGAGTGTCAAA ACCAAAAGACAGAGACAAGCGTTTAATCGTTATTTTGGAGCGTGCTTCGT TAGAAACTGTGAAGGTATTTTTTGCGTTATTTTACATCTGTCTTATTATT TACATCTTGACTATAAACTTAATTGGACTGTTGGTTTCTAGCTACTTGTC AACCTTAGAAGGTACCTGGATGTGCCAAAACACTTGATCTATGACAGCTC AGTTAGGCAAATTGCACAGATCCGCAGCGCTGCGAAATTCTGCATCTTTA GCGTTGTGATATTCCGCAATGTTGTGAAATTCCGCAGCTTTACTGCTGCA CCGGGGTCTGAAAATAATgtgcattttgaagaacaacccaaaaggaaact tttcactctagcattttaatttcctacctagcGATTATTCACAATCATTC TTGGAAGAAATGCTACATCGTTCAAAAAAGCGCTACTTTGTTCAAGAAAG CAATtttttgcctgattttgcaTGTGTTTAGAAGAAAATTGACAGTTAGT ACAAGTACATCGATTTTTGAAGTGTCTTTACGTCatatagaacaatagaa aatagcaaaagaacaaaggaattacccatagccaccatttcgcaaccatg gggaatcgcgATTTTACGcaaatgggaatcctcatatcgagtaaagcatc ttctgaaaatttcattcttccccataaatgctaaaatgaaaaacgaagaa gctttcgttttctaattgtctttttaatctgccacgaagtgttataaaat tccttataaaaagacaCGTTCTCCTACTAAGAGGTTTGAAAAATGACGTA GAAACAAGAAACTGTGAAAATAACCGTAATTAATCAACGGTCGTTAAAAC CAAACTAAAGGAATCGCGTCAGCAGTAAGAATTCCCATAacggttttgaa agttttcaatgaaattatTTCTGATGACTGAGAATTTCACTTCACAAAAG TATAAGTTATTCGGGACGAACTGAAAGGTGTGGCTAAAAGCGGATAAGGG ATACGGTggagaaaattaaattaaagtaaaattaaaagcaCAGGGAAAGC AAAGAAGAACATCTATTTTCTCTCAATCCCAACACAAAAAATATAGGCGC ACTTATCTTAATGCATAATAATTAGACTATTTTTAAGCATAATATTAAGC AAACTCAATGATACTTCGTGATATTCAGCGTCAGCGTCTGCTTTCTTTCT CGTGTTTAAAAATGATATGGTGGACCCCCTAAACCAAAGAATTATcaatc agataaaaaaagaaagaacataTCCCTAATACAATAGCATGGGTTACTCT CGtgattaccttaagtggataaattttggcggggattaaatatattttct ttttcagttagaaaaatactaaaatatctCACACGGGACCACGGGACGAA ACGATGTAAACAATTGAAAGATTATTCAAATTCAAAGCGATGAAACAACA CGAACACCCACGCGCCATCCAGGAATATTATGTTGATGGCAgcttaaaaa tgagaaagtaAGTGATTATACATTTTGACTTGTTCCACCCACAAACCAAA TTCTTGCAAATCCATTAAAGGGTAAACTTCCGTGCTTCAATACCTCAGAG TGTTTGTGCCCGTTCCCCGTTTATTGATTGTCGAATTTAAAGCAGAAGAA AAATTTCCGGGTATAATTTTGAACAACAATCACGTtaaattttgaacatt tgacTCGGAATTTAATTAGATGGAAAAACTTCCATGCTTTGAGAGATCGC AAAATATATGTGTCAAGGTTATTTGTGCCTTTTTACTTGACGTTTGTCAG CCTGTTAAAAAGTAACTATCATTCTCTGTGCTATAACTTCATTACTATTA CTCCAAGACTGGTAGCTTTTATGTGGCAGGGGTATAttttactgagacag gggtatattcAGAATAGAGCCTATTTAGACTAATTGCCCAGGGTACTCAT TTTTAACGGACAAGGCAGGCCCAGTGAGAACCTGGATCTCTGTACTATTA TCGTAAAATCTAAATCCACTAAAAACAGACCTTTGTTCTATTGGTTTTAA TGTTCTTTTATGTCCCTTTCCTAACGGGCTAATAAACGACTCGGACTTTT TGAGAGAGGGACGTTCCCCTCGCACAAATGAAACATGTATAACAACGCTT CCCTTTTTTCAGAATATCGCTTGACTTAAAGACAAAGGGCCCGATGAACC GTCCGTGACAGACAGTATTATCGTCAAGCTGTGAAGTAAACAGTGATGGT AGTGTTACCCTAATTGTAATTTATCGAAAGTGTACGTAAGGtaaaaaagc taaaagaataaaagtttatctggctaaaaaatataaaagccaTGGATCAT TTTACAATTAGAAATATCTTTGTcttcttttcgtttttcttctaGCGCCG GACCACATTTCTAGATAGAGATAAATACAATATATATAGAGTTCCTCTAA AAGCACCCCGTGCTCATCACAgtacagccccactggaaaattaaatttga tttaatcttcatttgaaattcaatagatttatatccccattgggatttcg atagaaatttgtCCTAAATCCCCACTTCCACcgggggctgtgaggcaggg tgCTCAAAAGTACATATAgcgtaaaaaaaaaactatgacATATAGCGAAT AGGCCACAGGGTGAGGTATAAAATTGAATGGGGATTAAACCGATTTCTGG TTCTGATGGCAGCAACTTTGACAGTCTCAAAGTATAGTGGAATTTCGTCC AGATCTCGTATCACGAAActaattgaatttgaaagaagatATGACTCTTA CCCCCAGTAAAGATGACGTGCTCATGTCAAATCAATCTGAAACGAAtgca ttaaaggaagaaaaaattagaaaaagattgaggtttccaaaattaattct cgctaaaattaatcaaaatctttgaaatcaaCTCATCTGAACCCGGCTTT ATTTCCCCACAATATATCGCAACTAAGAAGTAACGCTTTTACACCGTATA TCTAACTGTACAATCCAATGTTACATTACATGAACGTTGTGGACGTTTAT GTTTATGTCAGCTGAGGTGTTGCAGGGGTGAAACAACGGGATGGTGCCTG TCCTTAAAAAACGCCTTTTCGCTACTTATTCATTTAAGATTGCACTCAAA TGCATTTAGTTGATTTAGTATTCTCAAAGGTATTTCAATATGACACTTTT TACGAGGAAGATGTTTATCGATTACAAAACTTACGTCACAACCACggagc gctgacttttagttttaatgacttGCTCTCATTCGTTTGGTttctgtaat aaaaagaaagtcgttattgtgaacttttaACATGCTTTAAATGGAGGTAC TTGTACTAACTGATTGATAggctcataatttttaaaatcacaagCTTCAA TTGGAAGCGTTGCGTAAAATAGCAGCGCAACCCTGGGGAAACGCTGGGAA AAACTGCAACGTTGCGGAATATTGCAACGTtgcggatctatgcaatttGC CAAACTGAGCTTAGGAAATACAGtgtgttttgtgtttttgaaacAAATAG TAGCTCTCACATTCTTTTTACTCCCTCTTTTTCTAGCTACTTCCcgccgc gtgttagtgtagacacaactttactccggggaaatgaagggttttcattg gtctaaaatcacggatggtcacgtgaccaaaatttttatctagggaaatg ccgtggcggcaatgttttgttttagtgagattgaccattttgttgttttg atttgagcgggcgaaatttctgtacaaaccaaaatatggcttcgttggaa taccggttgaaacacttgtgtaggctagacttacctcttttctcttttct attccaacaataaaaaatgcttATATACATAGTTGTCactagtctggaga tccatattccagtatagacctaactcttcacacaaaaattacggaaaacg catgtttggactttgtaccttatgctgcactcaagcacttaacagtccat cacaaactgccatataaacaaaactcaacattctcacaaaagttgtcttt ttgatttcccaaacattcgtctaaagcgttcacttccacaataatttatg taattgcaatttcggtcagtccaccgtcggcttcaacatatacacgtgtt tttatttacgtgaccgaagtgcctagtaaaacaatccgggggtaagtggc gaaagaacacagcagattatttgtaaagtaaagaaatatcttttggcatt gacaatccaatataatatattatattatatttccctaattcaaaaatcaa aaattcatttttcattcgcgaaaaataaaaataagaaaataatgaattaa tattacatactaagacgcccccgtcttttactctcgtttaattcCCGATC Tcagaacgtgcaaaacgcccgtccccgcccaatatccacccaatcagctt aaattcactttaattgtcctttgactttcaaaaattagtatttaaaaatt atgaatttataataattacaaaaaaaaaaaaattgatacttcattagtga aatattcaataaattccaagtttcaattttcagtgggcgtttttctagtg CTTTGTTGATCgagcaatttttgcgtcacacaaactttcttgggcgctcg taataattatgcattgccaaatttggttctccattatCAAGTCAGGATCg ttggtgacgtcacctaagcataaaaaagaaaggatttcgtcagttttatg catatattaatttgcgagatattctattcgccgcgcgagcgcacttttcg tagactagtcggaatactttcttttactcgtgggattgatggtaactttt catcttcgttatttttaaaatgaagcacaaccgaaaaaaacgaaacttca gaaagttgcgtatttccagtgagtaaaccattctgacaattaacaaaatt gatgatgatgattttttttcggtcaggcaaatgtctcgtattgggggttc tagtcttgacccctaagcctacgcgagattgaagcgtttgggtaaacgag acaaaactccaaaagagctggtgttttgaagcgcttccgtgtgatcgaaa tatcgctgtttgtgacggactgcttaagccaaagtcccgcaaaggcggga caaaaatcagttttttgaagtttgcaaaaaaacgccacatagaagatctt tcaaattcaatatgtgaatagagcagtaaaaaatacaacttttctatttt tcctttattttgcaaaagttctaggaatgaaaataaagggataatgataa ttgaatactatccattgatgacccgcgtcactatcgtaaagctagaatcg cttcgcgtactcttcgcttgagaaaatgattgacagattgaagtttttca cccgcgcaggagttcgtggagcgttctcggctcaatcctcggaccgcgct aaaaatggtagactgagctgtgatagatcatttcgatggaagttgttgga atgtttaaaaggctcttgacagaaaatcgtttgttttattttcaatgatg acagtgcggttattaattttgttagatctgacaaattgatgtttgtaagt gcactttatagttttgattcccattgaagaatcatattctggttttcatg ttattagatgctgttttagagctttaggtttACACTGTattctctattca aacttacaccacatataagcaaaaaaatgcgccacaatacttctaaaggg atttatgaaaaaattaccTGGCGCTTTTTATATACCATATATACAGAAGA TGAAATTGTTTGAGCCAAGCCaatcttgaaaactaatttgaagatcaatt TCCCAAATAGACAATTTGcaggggagacggaacccacctagatccgcccA CTGCCGAATAgcctatttcccggaaattttgccggacctaaaaaaaCTGA CCCATATGTGCATGAATgaacatgtgcggaattatttttactttagcgta taaacaaggccttaaaaatcaaagcgctgttTCAGGaattaaaatgacaa aatttagttggttgatattctggctgctgcacgtttgcaatctgtcattt tgtctcattttaagtttccaagttttaattgtcttgggatcttgaaaTTG ATTCAGGTACTCTCATCCTTggtgttgcaaatacatcctgtagatgactg atgttgtttttttctgaaaacttgatttcctagtgtgactaactgttttg ATGCCAGAGTATTTCGTTATTCAATATTACATCCTGACTAGCCTGGGTAT TCAgactaaaaatttcaaaaaaaaactcttacctcaacatataaagttct aaaattttagagtctggtacaactaaaaaagtctggtGCAGTTtcaatga cacagtctgtgagtgaacccttgttgacagaatcagacagacacacataa ttacttaccagaAAGACCTCTTTTATAAACttaaaagtctttcaaaacta ctttaaactacacaTTCATTCACACTGatttccatcagccattttgttta gaaatgaacctgtcgcctgtgttttcattttcatttgtttatcttttttt gcaatgtcagccttttccataaattatgtgcgcacatagaaaaatattga aaacccCATGAAAATTCTGTTCAGTGACTTGCCGCGAATTGAccaattaa agtctattcacgataagtgtgcactcttttttcatttacctataactttt gaaggaattcttcaatctttataaatttggtatcattggaaaggtattag tgagtggaacaatttgaaataaaaaaaactttaagaagattattaaaatg aagatgaaaatgaagaagaaaaaaatgaagatcttgtagaaaaatgctat aactatcattttcactgaagtgaatctttaatcatcgaacgtcatcactg tgaaaaaaattctcaaaaatatttattcagtcaaaagatatcaaacaaag ttataagctgattgacgtctaaaaacgctgttttctgcagttttttgctg ttttttggggtcaatcacttattaactttgtatcataactttatattgaa taaacattttaatgaaatttcttcacagtgatgatctcctaagatcaaag aacctctccagtgaaaatgaaggttatagcacttttctacaagatcttca tttttttcttcttctttttcatcttcatttttagaatttttttaaagatt tttttatttcaaattgtttttcttactaatatctttccaatgataccaaa tttataaagattgaagaattccttcaaaagttataggtaaaagaaaaaag agtgcacacttatcgtgaatagactttagatgcACTTGCATATGCAAAGA CAATTATCTCTGTACGCAAGTTACTTGGAGCAGACTgtagacaagaaaca aaacagACAATGTTAGACAATGAAATAGTTGACGGTCTGGATATCAAGGC TACATCCtgactagcaaaaggtctattattagATGAAATGATACTAAATT CACATCACTTCTACATcaagcatcaagcagagaggcatcaagtaccattt tgagaatctttggtataacctggctgggggttgaacccacaaccttgcga actgTAGCGAGATGCTCTACCACTTCACTATGGTAGCTTGTGATGTGTAT GCTTAGTATTACCAAATTTACTCATTATGAATAACTAATGAAGAGAAAAA GTGCTATCACTCAAAAAGAGGCTGGTTATGCTCCGTATGGCTTTCTAAGC GGTTTTCTAAAAGTGAGTCGAGCTATAGTATAAAGATACAGGGAAGTAAG TCTGTTACTGCAAAATTACCTGTGAATAAATAATATTTTGGTAAATCGTT CTACACAGCTCATCTCGACCTGGACTGAGCAAAACCAGCCAGCCATAATT AGCATCAAGACCAGATAGTTGTTCATAAAGGAACTTGGCTGATCCACATC TTCTTTGACAATCCTGTCTTGAACGTGCTCCAAATCGCTTGTAGAGATAT TATTAaacttatttttactttttagaatGGTAAAACGTTTGAGCTTTTGA ACTGTGATGATCATAAAGGCATTTTGAGGAAGAAGGGAAATGACCCTGCA AACTACCGACCAGACATAACCCACCAATGTTTACTGATGTTGATGGACAG TCCCTTGAATCGTGCTGGTCTTCTTCAAGTTTACATCCACACAGAAAAGA ACGTTCTAATTGAGATCAACCCACAAACTCGAATTCCAAGAACTTATAAT AGATTTTCTGGTTTGATGGGTAAGTTTATTTCTGACAGTTATAattgtta ttgttgttattaCATCATAGGTTTGAATAAAAGTTCACATGTACCATATA GGTCTCTAAGAACTTTTTTGGAATTATCCTACAGTACCGTGATACTTTGT TATTAATGCTATTTTCATGCTCGTTCCCTGCATGTTATCaatttttgatg cttactggcGACGTGAATAAATCCTTTGATATACGAGGCTGTATTTTATG AAGAATTTTCTCTATCAAAGTTTCTTGAAAGTACATGATATAATtgcaaa gcaaaaaaataagttaaaaattcctttttctttttttccagtcCAATTGC TTCACAAATTAAGTATCCACGCTTCAAATGGTCCCATCAAACTAATGAAG GTATATTTTCTGCTCATTTTCAtagtattgttttttttataccGGGAGCA CCACAAataaagtttctctctttaaaataaatattcttgaggtctaaaaa ttctaaaagaaccattcttttttcattggaaagaagaaacgTAAACTTGT ATTTTGaagggtcatttattaaattcggttccctagatcaaaagttatgc ccaatgtaataaaaaaattattttcagaaagtgctcgaaaactttgaaaa tcgacctatcaaattaaacagatgCATAATTACTAATCTCAATAGGTTAT TGATCAAGCCTGTAAAGTCTGAAAAGTGCATTATCGTTacataaatttat ttcaaattttggccCGTTTTAGCACACTCTGTATTTAATGCATCATTCTA AAAGTTTTCCCTTCCATAACTTTCTGCTTTAGGTAATCAAAAACCCAATA ACAGATCATCTTCCAGTTGGCTGCAAAAAACTAGGTATAATTAAcattag aaatgaaatttttctttaccTCTTCACCCCAATGCTGTTTTATTTTAATG CATTGTCACAATAAATTCTCTCTAAATTTACGGTTAGGGttttcattctt ttaaaaacatcTAAAAAGTATCGTATCAAACTTTTAAAGACTTCATTTGT TTATGACTCAAAAATGTGACGTATTTACAATGATAAATCCTGATGAATCT CAtttgtgatttcttttgtgTATTTACAGTGATGTCAtacaaagcaaaaa aatgcacgcCTTCAAGAGAACTGGTACCTACTGATGAACCAATCGTTTTT GTTATCGGTGCTATGGCTCATGGAAAGGTACGTCTCCAGTCTTTACatcc tttaaaattcaaaattaaacaaaaaatcactttacaaTCAGAATAAACCA AAGACCTACTATCTACATCATCGAATTGCCTTCGCCGAGCTGTGGTCTAC TTATAAAGATGACGCACCATTTTACCTCAGCCAGGGACAGGGTAGCTATA TCTAGTGAAGTGTTACTAAAAGGTTTTGGAAACTTTAAAAGgttgaaatt gatttgatagATGTGCCAAACCCTGAAACCCCACCCCCACCGCCTTAGGG ACTGAAGCCTTGACTGCATGATGTAAAACTTGATTCTCACCAATGTTTTT CAGGTCGATGCAAGCTATGGTGAGGAAGATATAGCGATCAGTGAATACCC ACTCTCCGCTGCTCTAACGTGTGCCAAAGTGTGTAGTGCCTTCGAAGAAC AATGGGGAATCACTTAA

Coding sequence (CDS) from alignment at sc0000072_pilon:130612..140628+

>XLOC_043223 ID=XLOC_043223|Name=XLOC_043223|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=1362bp|location=Sequence derived from alignment at sc0000072_pilon:130612..140628+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGAGTGACGATGAAGGACCTAAAAAAGCAAAGATACCAAGAGTGTCAAA
ACCAAAAGACAGAGACAAGCGTTTAATCGTTATTTTGGAGCGTGCTTCGT
TAGAAACTGTGAAGATGAGTGACGATGAAGGACCTAAAAAAGCAAAGATA
CCAAGAGTGTCAAAACCAAAAGACAGAGACAAGCGTTTAATCGTTATTTT
GGAGCGTGCTTCGTTAGAAACTGTGAAGaatGGTAAAACGTTTGAGCTTT
TGAACTGTGATGATCATAAAGGCATTTTGAGGAAGAAGGGAAATGACCCT
GCAAACTACCGACCAGACATAACCCACCAATGTTTACTGATGTTGATGGA
CAGTCCCTTGAATCGTGCTGGTCTTCTTCAAGTTTACATCCACACAGAAA
AGAACGTTCTAATTGAGATCAACCCACAAACTCGAATTCCAAGAACTTAT
AATAGATTTTCTGGTTTGATGGaatGGTAAAACGTTTGAGCTTTTGAACT
GTGATGATCATAAAGGCATTTTGAGGAAGAAGGGAAATGACCCTGCAAAC
TACCGACCAGACATAACCCACCAATGTTTACTGATGTTGATGGACAGTCC
CTTGAATCGTGCTGGTCTTCTTCAAGTTTACATCCACACAGAAAAGAACG
TTCTAATTGAGATCAACCCACAAACTCGAATTCCAAGAACTTATAATAGA
TTTTCTGGTTTGATGGtcCAATTGCTTCACAAATTAAGTATCCACGCTTC
AAATGGTCCCATCAAACTAATGAAGtcCAATTGCTTCACAAATTAAGTAT
CCACGCTTCAAATGGTCCCATCAAACTAATGAAGGTAATCAAAAACCCAA
TAACAGATCATCTTCCAGTTGGCTGCAAAAAACTAGGTAATCAAAAACCC
AATAACAGATCATCTTCCAGTTGGCTGCAAAAAACTAGTGATGTCAtaca
aagcaaaaaaatgcacgcCTTCAAGAGAACTGGTACCTACTGATGAACCA
ATCGTTTTTGTTATCGGTGCTATGGCTCATGGAAAGTGATGTCAtacaaa
gcaaaaaaatgcacgcCTTCAAGAGAACTGGTACCTACTGATGAACCAAT
CGTTTTTGTTATCGGTGCTATGGCTCATGGAAAGGTCGATGCAAGCTATG
GTGAGGAAGATATAGCGATCAGTGAATACCCACTCTCCGCTGCTCTAACG
TGTGCCAAAGTGTGTAGTGCCTTCGAAGAACAATGGGGAATCACTTAAGT
CGATGCAAGCTATGGTGAGGAAGATATAGCGATCAGTGAATACCCACTCT
CCGCTGCTCTAACGTGTGCCAAAGTGTGTAGTGCCTTCGAAGAACAATGG
GGAATCACTTAA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
XLOC_043223XLOC_043223-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000072_pilongenomesc0000072_pilon:130612..140628 +
Properties
Property NameValue
Aaloc568-681:9904
Aaloc472-567:9482
Aaloc418-468:9183
Aaloc361-417:8694
Aaloc115-357:8126
Aaloc1-114:1