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Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000398_pilon:113124..116272+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >XLOC_042752 ID=XLOC_042752|Name=XLOC_042752|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=3149bp|location=Sequence derived from alignment at sc0000398_pilon:113124..116272+ (Clytia hemisphaerica_ch_hm2_pilon)
AGGACCAAGAAAAAGCAATTTGTATTCGACGAGCCATCATCAAGTGGAGT
CTTTTCTTTGATATCGAATTCAAGCCAAGACTTTGTTCCCATCATATGTG
TTGATGAAGCGTATACGTTTTTAAACGAAGTTTTCATCGGGAAGAAGGAG
AGTATTTCCATGGATCGTCTATGCAAGTTGTATGATGGCGATTATTGGTA
CAAACTAAATGGAACTTCGGCAAAGAGAAGGGGTGTGGCAAGTGCCCGTG
CAAGCATGTGTTGCCTGTTAACaccgaaaaagtttttagaaCAGTTGTGG
CCAAAAATCATCGACACCAACAACGGTCTTGCTGATCGTATCATGCTCTT
CCACGTTCAGCAGGAGGAAAAAAGCTTGGAAGACatcgaaaaaatagcaa
atgaACTAGACACTGGCCCATTGAAAGACCTCACGGAAGTTTACAATTAC
ATATATGACGAACACCACACAGATCAACCGCCCAGGGTCTACCAGCTAGA
TCCTGAGGCGAAAACCATATTTTACGCTTTCAACAGGGCCCGGCTCTGTA
ATTCGGAAAATGTGGCACCCAAGATGACTGCATCTAAAACAACCAAACAA
ATAATGAAGTTGACTCTGACCCTTCATATTCTTTATCATCGCCTTCGATG
TGCCCTTAATCCGGAAATTCAGCATACACCAACACCACTACTGATTAAAC
CTGATATACTCAACAATGCTATATCACTCCATTCAACCCTTCAAGCTTAT
AGTGAGCTAGCAGCAACTGCAGTAAGTATTTTATTTAAGTGTTATGAATG
GCGGGATCCAGTAGCGTAGTGGGTCAAGACAGGGGAGACAAAATTAGAAT
TTTGGCTAAAGCTCCCCCTTGTAGGcctattttgattttggctgAAAATG
TAATGGTTCTGAGCTATGACCAACTGATATAGCGTCGGTAAACAGCCCGT
TTTGGAGCGTAGATCTACGGCTTCCGCCGTCTAAGGGTTGATACCAATGG
CTGGAACAGCCAaccttttcttgaatttctcgagctgtacttaatatttt
ttcatggaATTTTTTGTGCCCGCTAACGCAAAATggaaatacctaaaatg
tgacaaaGCCTACGGATTTTTCCAAAACATATGACATGATTCCCAAGTGT
ATATTAAAGTTTATTCGCTTTAACTGTGCACTCATTTTTCTTAccatgtg
gaaaccactctcaagggaatTTCTCTGATTAGGCAGACATGACTTCTACA
TAGTagcaaaaaagagtgcacacttaaagcgaattgACTTTAGTGATCAC
TAAACTGTCAATTATAGTAGTGATATTTTTGGAGTTGTGTTTGAAATGAC
GGTAATTgcattactctcgggtacttaatagccgcggggtttggaataag
cgggggggggggggggttggaaaaaatctcacaacgtaataagcgggggg
ggggttggaataaaaatgtcctgggtgggaaatttttgaaaaggaggcta
atacatcagaattaggacaaaaaagggaactttcaaaaacatttttccaa
aaattaatgagcggggggggggggttggaataacaatgtcctgggtggaa
aattttcgaaaaattaattagcaagggggacggctattaggtataCCCGA
GAGTATCAACTTTGACTTGGTCTAAGATCTTATTTTTTGCGTTGATGTAC
GATGAATGAAATTGCGATTTGTCATCACAACATACAATATGTAAGCTGTG
ATTTTTATGGTAgaaaatatgctggaaaaacggttttgggcaatttctaa
agacttcatcattagtttttcatgatattttgctcaaaaagGTGTGTGTT
AGCAATGCTCAAATGACCTAGTAATTTGATTCCGtccgaaaaaaagaaaa
tttgccGCAAATCGCTATTTTCTGGTTCTCATTTTTCACATAAAATACTG
TTGATAGCTcagtcttttcaaaaaattgccggaacaaccGATTGTCAACC
TGGAAAAGCGGGCTTCCTTCAATTTGTCGATATTGCTCtttcattcgctt
tttcgttcgttcgatcgttcgttcgttttcagTGCCATTAATGtctatat
tttctttcaattgaCTAACTTTCTTTATCAGATAGGTCAAATCAGTATCC
AGCTtgtttatcaaatgtttcataTTTCTTGGCCTTAAATCACTCAAAAA
TACTGAAAAGTTTGATACTAAACAGTACAGACTTGGTGAAACACACACAC
AAGAACATTTCTACTTATGGAAGTggttcgactcgatactttttttccgg
acaccttGTACTGTTCAAAAAGGATAACATatcataacccccgtttttta
ttaaaaatttggagatttgatttttcacagaaaagtgctaccaaggggta
tttcgggtcccatatatactgaaggacttttccgtttgctttgaaatttg
acaaccttcttaacctaaggttgaaatACCActagtgtaaaaatgaacgt
tatagcatgaGTAGAAAACAAGCTCAATTTGTttaatcgcaaatttaacc
tcTAAAAATCGCTAATTTtccaaccaaaaatacattcaaatgtagcgctt
ttaattctctaagacaagcaaaaaaaattttttttgactatcaaaagtta
cagacattttcttgtttccaacactgccaattatatccgAATACACTCTA
GGaaagatttctttattttttatatttagtgTGTCAAATTGAATACATCT
GAGAGTGTGCGATTCGAAGTACTGATGACAGATATTCAGGAGAAGATATT
GTCCTTGCCTGgaccatttcacagtcgaaaaaGAATTTACAACTCCTATT
CCTCGGCAAACAGACCCACCCCTGATCAAACCCAACAGGCAATGGAGAAT
TTACAAAGCCTCAAATTTGGATTTGTAAAAAAGATCGGAAAAGCACATGT
CTTTTACAAGCAATTACCATCAAAAGTCATCGATTTTACGTCCAGTAAAA
TGACAGAAGAGGCGtacaaaatggtttttgtaTCAAAGGACCCTATCCCT
AccaaaaagttttataaaaagatGATCGATGAACACCCTCAAAAGGACCT
TCTCTTAGTAGAAGATGGATTTCATCAGAGTGATGATGAAGCAGATTAA Coding sequence (CDS) from alignment at sc0000398_pilon:113124..116272+ >XLOC_042752 ID=XLOC_042752|Name=XLOC_042752|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=2382bp|location=Sequence derived from alignment at sc0000398_pilon:113124..116272+ (Clytia hemisphaerica_ch_hm2_pilon)
AGGACCAAGAAAAAGCAATTTGTATTCGACGAGCCATCATCAAGTGGAGT
CTTTTCTTTGATATCGAATTCAAGCCAAGACTTTGTTCCCATCATATGTG
TTGATGAAGCGTATACGTTTTTAAACGAAGTTTTCATCGGGAAGAAGGAG
AGTATTTCCATGGATCGTCTATGCAAGTTGTATGATGGCGATTATTGGTA
CAAACTAAATGGAACTTCGGCAAAGAGAAGGGGTGTGGCAAGTGCCCGTG
CAAGCATGTGTTGCCTGTTAACaccgaaaaagtttttagaaCAGTTGTGG
CCAAAAATCATCGACACCAACAACGGTCTTGCTGATCGTATCATGCTCTT
CCACGTTCAGCAGGAGGAAAAAAGCTTGGAAGACatcgaaaaaatagcaa
atgaACTAGACACTGGCCCATTGAAAGACCTCACGGAAGTTTACAATTAC
ATATATGACGAACACCACACAGATCAACCGCCCAGGGTCTACCAGCTAGA
TCCTGAGGCGAAAACCATATTTTACGCTTTCAACAGGGCCCGGCTCTGTA
ATTCGGAAAATGTGGCACCCAAGATGACTGCATCTAAAACAACCAAACAA
ATAATGAAGTTGACTCTGACCCTTCATATTCTTTATCATCGCCTTCGATG
TGCCCTTAATCCGGAAATTCAGCATACACCAACACCACTACTGATTAAAC
CTGATATACTCAACAATGCTATATCACTCCATTCAACCCTTCAAGCTTAT
AGTGAGCTAGCAGCAACTGCAAGGACCAAGAAAAAGCAATTTGTATTCGA
CGAGCCATCATCAAGTGGAGTCTTTTCTTTGATATCGAATTCAAGCCAAG
ACTTTGTTCCCATCATATGTGTTGATGAAGCGTATACGTTTTTAAACGAA
GTTTTCATCGGGAAGAAGGAGAGTATTTCCATGGATCGTCTATGCAAGTT
GTATGATGGCGATTATTGGTACAAACTAAATGGAACTTCGGCAAAGAGAA
GGGGTGTGGCAAGTGCCCGTGCAAGCATGTGTTGCCTGTTAACaccgaaa
aagtttttagaaCAGTTGTGGCCAAAAATCATCGACACCAACAACGGTCT
TGCTGATCGTATCATGCTCTTCCACGTTCAGCAGGAGGAAAAAAGCTTGG
AAGACatcgaaaaaatagcaaatgaACTAGACACTGGCCCATTGAAAGAC
CTCACGGAAGTTTACAATTACATATATGACGAACACCACACAGATCAACC
GCCCAGGGTCTACCAGCTAGATCCTGAGGCGAAAACCATATTTTACGCTT
TCAACAGGGCCCGGCTCTGTAATTCGGAAAATGTGGCACCCAAGATGACT
GCATCTAAAACAACCAAACAAATAATGAAGTTGACTCTGACCCTTCATAT
TCTTTATCATCGCCTTCGATGTGCCCTTAATCCGGAAATTCAGCATACAC
CAACACCACTACTGATTAAACCTGATATACTCAACAATGCTATATCACTC
CATTCAACCCTTCAAGCTTATAGTGAGCTAGCAGCAACTGCAtgTGTCAA
ATTGAATACATCTGAGAGTGTGCGATTCGAAGTACTGATGACAGATATTC
AGGAGAAGATATTGTCCTTGCCTGgaccatttcacagtcgaaaaaGAATT
TACAACTCCTATTCCTCGGCAAACAGACCCACCCCTGATCAAACCCAACA
GGCAATGGAGAATTTACAAAGCCTCAAATTTGGATTTGTAAAAAAGATCG
GAAAAGCACATGTCTTTTACAAGCAATTACCATCAAAAGTCATCGATTTT
ACGTCCAGTAAAATGACAGAAGAGGCGtacaaaatggtttttgtaTCAAA
GGACCCTATCCCTAccaaaaagttttataaaaagatGATCGATGAACACC
CTCAAAAGGACCTTCTCTTAGTAGAAGATGGATTTCATCAGAGTGATGAT
GAAGCAGATTAAtgTGTCAAATTGAATACATCTGAGAGTGTGCGATTCGA
AGTACTGATGACAGATATTCAGGAGAAGATATTGTCCTTGCCTGgaccat
ttcacagtcgaaaaaGAATTTACAACTCCTATTCCTCGGCAAACAGACCC
ACCCCTGATCAAACCCAACAGGCAATGGAGAATTTACAAAGCCTCAAATT
TGGATTTGTAAAAAAGATCGGAAAAGCACATGTCTTTTACAAGCAATTAC
CATCAAAAGTCATCGATTTTACGTCCAGTAAAATGACAGAAGAGGCGtac
aaaatggtttttgtaTCAAAGGACCCTATCCCTAccaaaaagttttataa
aaagatGATCGATGAACACCCTCAAAAGGACCTTCTCTTAGTAGAAGATG
GATTTCATCAGAGTGATGATGAAGCAGATTAA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000398_pilon | genome | sc0000398_pilon:113124..116272 + |
Properties
| Property Name | Value |
|---|
| Aaloc | 772-1191:2730 |
| Aaloc | 1-771:1 |
|
