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Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000007_pilon:1175648..1177874- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >XLOC_042550 ID=XLOC_042550|Name=XLOC_042550|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=2227bp|location=Sequence derived from alignment at sc0000007_pilon:1175648..1177874- (Clytia hemisphaerica_ch_hm2_pilon)
ATGGATGTATATTCGTTTGGTTTGATGGTGGCATGCTTGCTTGTCATCTT
TTACTTTCACACCAAAATCATTTTGTCAGCACTTTGTATCTTCATGGTTG
TGATCACGTGCCGCACGTACCTTTTACACTTCTATCGCAACTTGTGTGGT
TCACCACGTGGCCCCTTACCACTTCCCATCCTTGGAAACATTCATCAACT
CGGTGTAATGGCGCACGAAAATCTTCGCCTACTTTCCAAAACGTATGGTC
GTGTAATGAGGGTCTTAGTTGGAGATGATGTAGTGTATGTCATCTCAGGA
GCAAATGAAATCCTTGAAGGGTTGGTAACGAAAAGCGTGGACTTCGCAGG
ACGTCCTTTCACTTACACCTTGAATTTAACGACAGGGGGCAAAGGTAAGA
CCATCTAAAAAGTGTTTAAAAACCCAATTGGAGATTCCTTTATCCATTAT
CAGCTAGTTTAATTATCAATTGAAGACCATGAAATTGATTATAGCCAACA
ATATTATAATTTCATTTTCGTTCGTTTTTTAGGTATTGCTTTTGCAGATT
ATGATCCCAAATGGCGATTCTATCGAAAGATCGCTCACTCTTCCATGAGA
ATGTTTGGCAACGGATTGAAAACTATTGAGAATCTGGTGACGGAAGAAAG
TCAAGCATTGCACACACGATTCGACAAACATGTGGGAGAGCCGATTGACC
CTCATCATGATTTAGGTGAGTGGAGAACAAGATACTTTCTGGAAAAGTCC
ATTAGTAGTCCACTATTTCATCTTTTGAATATATACAAGTGATAACAATG
GCAAAACTCCTATCTTTCAAAACTGTTCTAAATTCTCAAATTTACTTTCT
TCAGGTTTGGCAGTATTGAATGTGGTGTTTGCCATGATTTTTGGAAGTCG
GTATGACATCGAAGACAATGAGTTTCAAGACTTGATCACCTCAAATACCA
TGTTTGTTCGTGGCTTCGAATACGACAGCTACATCGACGTCTTCCCAAGT
CTTCGTTTTCTTCCAAACAAACGCATCTCCACATTGAAACACGCCATCGA
TATGAGACGCCCAATCCTCCAAAAACACTTCCAAAAGCATAAGGACTCTT
TTGACCCCAGTGGTGATAATAAACGGGATCTGGCGTACGCCCTTCTAGAC
GCCCTACACGAGGCGGAAACGAACGATAAGCAAGCAGTACAAGAATTTCT
GCAGTACGATTTCTTACTATCTGTTCTTGATGACATGATTGGAGCAGGTT
CAGAAACAACTACTACCACCTTAAGATGGGCTGTTGTTTATTTGGTCAAT
TTCCCTGAATGCCAACAGAAGTGTATTGAACAGATCGAAGAAGTGGTGGG
CATGGATCGATTGCCGACCATCAAGGACAAACCTTCCCTTCCATACATCG
AAGCTTTCCTCCACGAAACATTACGCATGAGTTCCATAGCACCAATGGCC
GTTCCCCATAAAACAACTTGCGATACAAGTATCGGAGGATACAAATTGCC
GAAAGATTCAAAGGTAAATAAACCATTCTAGTCGTCAGCTTTGTGTTTTC
ACCAAATATTCTAGACGATGCTATCGTCCGTTTAAAGGTCAGTAAACGCG
GGAAAAAGTTCGGGCGTCAGGGCGGTTTACGGGAAAAAAGTGGCGGTAGA
GTTTTGGAACAAAACGTTTACACTGTAAACATCTCCACCACTGCTTACTC
CACCCGAATTTATCACGCCTCTCCTAAACTATTCCCTTTTTTAGTGATCT
TGTGTAGACGATCAAATATTCTTGCTGTTCTATTTTGTTAAGTATAGTAT
CTAGCCCATTTCGATGAGGGATAAATGAATGAGCTAATACTCTTTTTCAC
AATTGTCATGTATTCATGCGTTGCTTTTCTTCCCGTTTCAGGTCATTTTC
AATTTATACGCATTGCATCGTGATGAGAAAGAATGGCCAGAGCCGTTGAA
ATTCGATCCAACTCGTTTCCTTGATGATAATGGTCAATTATTGCCTCCTG
GTCACAATCGCGCCTTTCTTCCATTTTCAGCTGGACGGAGAATCTGTTTG
GCAGAATCCTTGGCTAAACTTGAACTCTTCTTAGTGATTGCACAAATGAT
TGCAAAATTTCAATTTTTACAAGCGCCTGGCCATCCCTTACCGAGCTTGG
TCGGACAACCTGGACTCTTCCTCGGACCCAAACCACATAAGATTGTGATC
GACAAGCGAGTGGCCACAGGAGCATGA Coding sequence (CDS) from alignment at sc0000007_pilon:1175648..1177874- >XLOC_042550 ID=XLOC_042550|Name=XLOC_042550|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=3144bp|location=Sequence derived from alignment at sc0000007_pilon:1175648..1177874- (Clytia hemisphaerica_ch_hm2_pilon)
ATGGATGTATATTCGTTTGGTTTGATGGTGGCATGCTTGCTTGTCATCTT
TTACTTTCACACCAAAATCATTTTGTCAGCACTTTGTATCTTCATGGTTG
TGATCACGTGCCGCACGTACCTTTTACACTTCTATCGCAACTTGTGTGGT
TCACCACGTGGCCCCTTACCACTTCCCATCCTTGGAAACATTCATCAACT
CGGTGTAATGGCGCACGAAAATCTTCGCCTACTTTCCAAAACGTATGGTC
GTGTAATGAGGGTCTTAGTTGGAGATGATGTAGTGTATGTCATCTCAGGA
GCAAATGAAATCCTTGAAGGGTTGGTAACGAAAAGCGTGGACTTCGCAGG
ACGTCCTTTCACTTACACCTTGAATTTAACGACAGGGGGCAAAGATGGAT
GTATATTCGTTTGGTTTGATGGTGGCATGCTTGCTTGTCATCTTTTACTT
TCACACCAAAATCATTTTGTCAGCACTTTGTATCTTCATGGTTGTGATCA
CGTGCCGCACGTACCTTTTACACTTCTATCGCAACTTGTGTGGTTCACCA
CGTGGCCCCTTACCACTTCCCATCCTTGGAAACATTCATCAACTCGGTGT
AATGGCGCACGAAAATCTTCGCCTACTTTCCAAAACGTATGGTCGTGTAA
TGAGGGTCTTAGTTGGAGATGATGTAGTGTATGTCATCTCAGGAGCAAAT
GAAATCCTTGAAGGGTTGGTAACGAAAAGCGTGGACTTCGCAGGACGTCC
TTTCACTTACACCTTGAATTTAACGACAGGGGGCAAAGGTATTGCTTTTG
CAGATTATGATCCCAAATGGCGATTCTATCGAAAGATCGCTCACTCTTCC
ATGAGAATGTTTGGCAACGGATTGAAAACTATTGAGAATCTGGTGACGGA
AGAAAGTCAAGCATTGCACACACGATTCGACAAACATGTGGGAGAGCCGA
TTGACCCTCATCATGATTTAGGTATTGCTTTTGCAGATTATGATCCCAAA
TGGCGATTCTATCGAAAGATCGCTCACTCTTCCATGAGAATGTTTGGCAA
CGGATTGAAAACTATTGAGAATCTGGTGACGGAAGAAAGTCAAGCATTGC
ACACACGATTCGACAAACATGTGGGAGAGCCGATTGACCCTCATCATGAT
TTAGGTTTGGCAGTATTGAATGTGGTGTTTGCCATGATTTTTGGAAGTCG
GTATGACATCGAAGACAATGAGTTTCAAGACTTGATCACCTCAAATACCA
TGTTTGTTCGTGGCTTCGAATACGACAGCTACATCGACGTCTTCCCAAGT
CTTCGTTTTCTTCCAAACAAACGCATCTCCACATTGAAACACGCCATCGA
TATGAGACGCCCAATCCTCCAAAAACACTTCCAAAAGCATAAGGACTCTT
TTGACCCCAGTGGTGATAATAAACGGGATCTGGCGTACGCCCTTCTAGAC
GCCCTACACGAGGCGGAAACGAACGATAAGCAAGCAGTACAAGAATTTCT
GCAGTACGATTTCTTACTATCTGTTCTTGATGACATGATTGGAGCAGGTT
CAGAAACAACTACTACCACCTTAAGATGGGCTGTTGTTTATTTGGTCAAT
TTCCCTGAATGCCAACAGAAGTGTATTGAACAGATCGAAGAAGTGGTGGG
CATGGATCGATTGCCGACCATCAAGGACAAACCTTCCCTTCCATACATCG
AAGCTTTCCTCCACGAAACATTACGCATGAGTTCCATAGCACCAATGGCC
GTTCCCCATAAAACAACTTGCGATACAAGTATCGGAGGATACAAATTGCC
GAAAGATTCAAAGGTTTGGCAGTATTGAATGTGGTGTTTGCCATGATTTT
TGGAAGTCGGTATGACATCGAAGACAATGAGTTTCAAGACTTGATCACCT
CAAATACCATGTTTGTTCGTGGCTTCGAATACGACAGCTACATCGACGTC
TTCCCAAGTCTTCGTTTTCTTCCAAACAAACGCATCTCCACATTGAAACA
CGCCATCGATATGAGACGCCCAATCCTCCAAAAACACTTCCAAAAGCATA
AGGACTCTTTTGACCCCAGTGGTGATAATAAACGGGATCTGGCGTACGCC
CTTCTAGACGCCCTACACGAGGCGGAAACGAACGATAAGCAAGCAGTACA
AGAATTTCTGCAGTACGATTTCTTACTATCTGTTCTTGATGACATGATTG
GAGCAGGTTCAGAAACAACTACTACCACCTTAAGATGGGCTGTTGTTTAT
TTGGTCAATTTCCCTGAATGCCAACAGAAGTGTATTGAACAGATCGAAGA
AGTGGTGGGCATGGATCGATTGCCGACCATCAAGGACAAACCTTCCCTTC
CATACATCGAAGCTTTCCTCCACGAAACATTACGCATGAGTTCCATAGCA
CCAATGGCCGTTCCCCATAAAACAACTTGCGATACAAGTATCGGAGGATA
CAAATTGCCGAAAGATTCAAAGGTCATTTTCAATTTATACGCATTGCATC
GTGATGAGAAAGAATGGCCAGAGCCGTTGAAATTCGATCCAACTCGTTTC
CTTGATGATAATGGTCAATTATTGCCTCCTGGTCACAATCGCGCCTTTCT
TCCATTTTCAGCTGGACGGAGAATCTGTTTGGCAGAATCCTTGGCTAAAC
TTGAACTCTTCTTAGTGATTGCACAAATGATTGCAAAATTTCAATTTTTA
CAAGCGCCTGGCCATCCCTTACCGAGCTTGGTCGGACAACCTGGACTCTT
CCTCGGACCCAAACCACATAAGATTGTGATCGACAAGCGAGTGGCCACAG
GAGCATGAGTCATTTTCAATTTATACGCATTGCATCGTGATGAGAAAGAA
TGGCCAGAGCCGTTGAAATTCGATCCAACTCGTTTCCTTGATGATAATGG
TCAATTATTGCCTCCTGGTCACAATCGCGCCTTTCTTCCATTTTCAGCTG
GACGGAGAATCTGTTTGGCAGAATCCTTGGCTAAACTTGAACTCTTCTTA
GTGATTGCACAAATGATTGCAAAATTTCAATTTTTACAAGCGCCTGGCCA
TCCCTTACCGAGCTTGGTCGGACAACCTGGACTCTTCCTCGGACCCAAAC
CACATAAGATTGTGATCGACAAGCGAGTGGCCACAGGAGCATGA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000007_pilon | genome | sc0000007_pilon:1175648..1177874 - |
Properties
| Property Name | Value |
|---|
| Aaloc | 1237-1572:337 |
| Aaloc | 580-1236:1372 |
| Aaloc | 397-576:1694 |
| Aaloc | 1-393:2228 |
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