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Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000289_pilon:224192..229125+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >XLOC_042475 ID=XLOC_042475|Name=XLOC_042475|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=4934bp|location=Sequence derived from alignment at sc0000289_pilon:224192..229125+ (Clytia hemisphaerica_ch_hm2_pilon)
GGAAAACATAAAATGCTTCGAAATTATATCAAACGATGTCTTCTCATCTT
TAATATAGCTACTGTTACAATATTTgcaaagaagcttttacaatTCCAAT
CCATCCATCAAAACACTGCTATCGAGGGTCCTGAACCATGGTTCGATGGA
CAAGTAACACACAAGgatttttgttttcacaaatgtgttaaaaatTACAC
TCACTGTTTTTATGTTCAATACAAAGAAATCGATGCTTCAACCTGGCTGT
GTAAACTTTTTGCACTCATAACAGATTTGTCCAATCATTTGGTGATTTCA
GAAGGGGAAATGTTGGCACGTTCATTTCATCCAAATGATTATAGTGGAAT
CGgtaaatagatttttttatatcttaaatattttcccTTGGGGAAGGAGG
TACCcctaggcaaaaatgggtgctgacggtaatggtaatttttttacctt
tcaaagtctttctattaccgtgaaaagcacaggtcaaaatcatatattga
cgctgtgctggacgaatcgagattctattcatcgcgcaatcaacgaagac
aaaagtaaccatgacgaccatccaagatcttggatgaagttcaaagttga
tatttttattcccgtcgttgaaaacacaactaaaaaatatcatcaatgct
ttttaaaaagagtcagtgatagagaatcataacataaagtctgtctatta
tttcgattcaattaaaagtgaccgattacacttggaggtttctggggaat
tcgtaaatagtaaactgcatactgatacagtctgctagacattaataagg
taatatttgctattcatctttgattctttctacagtgattagattgacac
atgcgcgataaaatttctattattggtcttcagaggttaatatattcttt
gaaaacttaacctctgatactcagggtatctTTCTATGGGTTGCAAAAAT
GAGAAAGATTTTAAttaatctctctaagggtcggttctTTCACAAACTCG
AGTCAAAGAAGAATAGTGAATAAGTCAAGAAAGTAAGAAAACTTTTCGAC
AGTATTGgagaattcttttgaaaattgaagaaatttttgtggaaatttCT
TTCTAACCCTTTCCATGCCATTTGACCAAAATGTTGGTCATTTTGGTGCt
tcaaaaagaaagtaaaatgaAGCATTGAATTTTAGCTTGAATATggtaat
aatatttttcaaaagataaaaacgAAGATTTACAACTTGCTGATTTTTAA
AACTATTGGTTTGAAGGTTATTTTGGTATAAAACCTTTTAGAAAAACGCT
TATCAAAGTTGAATGAAAGTGAAACAGCATAAATTCAATTTTGACACGGA
AGGGcacttttttagcaattttgtcTCTCTAAGAATCACTTTTTCAGCAT
AAATTATTTtctataagggtcgattttcgggGGACCCGTCTACACATACC
TGTTATCCGCCAACCCTATCACCCCCTTGGGATTTTTCCAactcaaaaaa
taacaaattactttttcttaatGCGGATAAACTTTACTTTCTCTTTTCAG
ATTGTCAAACGCATCATGATTTTGGACATAAAACTTCAGGTGTATACAAT
ATCACACACAACGGAAAAACAATGACCGTGTATTGTCACATGTTTCCAGA
TGGAGGATGGATAGCTATTCAAAGAAGAGTAAATGTTGAGGATCTTTCAT
TTAATCAGAATTGGGAAGGTAATGTATTTTGTACAACACAGATATCTGTA
TAAAACCGAAGGACTAGATAGGTACTTTACTAAGCGCAAAAAAGGGGATC
TAGCGTTGGGGTTGGAATTAATCTTACtttttttGCGTTGGGGTTTGAAA
TTCTATTGATTATAAAAATGTAATaagataaaaaaacttttttctggttt
tCTCTAGTAGAGATGGGATTAATTGTATATTTCCAATTGGAGTGagacct
caaaatatttttcctaaCAGGGGACCTTTTTTAGTAACTATCCATTAAGT
AGCAGGTCCAAaacacttcaaaaattgtcttcTCTCTTTCTTTTTAAACG
TCATTTCTCAACTACCTAATAACCCTAGATCTATACACATAACTGGACGG
ATTAcccccccccTAATGTAGCGCCCAGTGTTAACTTTGCTTTCCATTTC
TCGGGTCACCTCTCACAGCTCTTAACCAAACTACCTTTATCGGCAGTCGA
ACTAAAAACTATTTACTTGTCGTTTTTAGTTTACAAGGATGGTTTTGGAG
ATCCAGCATCAAACTATTGGATTGGTAATGATAACATTCACTACCTGACC
ACCGGCAGAAACATGGATATCATGTTTATTGCAATAGCTTGGGACTGGTC
AGAAATAAATGCTCGATATGAGGGTTTTTTCATCGAGGATGAAACCGCCA
ATTATAAAGTACATtcaggtaatttttttttactaaccTTACTTATTCTG
CGCCATTTTCCGTATCAATCAGCCTCTTCGATACGTCTATGTCCTTCCCT
ACTCTCAGCCGTTTAAATTGGAAGATCAAGGTCAGATCAAGTTTTGTCGC
CTTGTCGTTTGTTAGGTATCCCTGGTGGTCGTTTCCCGTGAAATCTTGAA
GATATATGTTCGCATGCTTAAATAAACAGTAGTGAAGATAAAAACGAAGA
TAAACGAGATTTATGACGAGAGTTTTTCGCGAGATGTTTGCAATTTTACG
GACTAAACCACAAGAGATTTGATTGAAAGAGTGAAATTAGATTTACGTCA
TATATTTTGATTAGAATTTGACTGAATAGCGCTTCGCAaagcatacgtca
taattattacttttcactttttttgacatttgtacgagttgcaatcccac
aattcaacgcggctcaattaaagatacgtgcaagttgttatatatctttt
gtcaatgatgtagttaacgtgcaaaagagattaacgcaaaggttggtggg
attggaactcgtacaaacacatcgagagtaatgattatgtcaaaaataaa
atctatttttagatttagcgcggtgcgctattgaCCAGGCCGTAAATCAA
AAACCActgttataaattttatacttGATCATGCTAGCATCTGTTtagaa
aactttatttttagacTTGGGAGCTAGAGAACCGTCACAAAAATTCTTGG
TAAGACTAGTCAAGATTAAATCAGGCACAATAGCCGGATGCTTCTACACA
GACTCATgcttttcatatattttctcGTTTCAGGTACATATAAAGAGGGT
ACTTCAGTCGATTACAAAGGTGAGGGAGATTTTTCTAGGGCAAATTTCTA
CCGCAACAATAGCCTAAAGCTTACTTctagttgaaactttttttctcgtA
TTCTTCCAGTAAAGTAGAACAAGAAGCACTTGGGAATACAATATTAAAAA
TTAGGTCGCATTAAAATTGTCGAAGTTTACTATTGTTAACTAATATTTGG
AGGGAGTGGAAGTGCCAAAAGGAGGCCATCATAAAGACACTATgaaagaa
cgaagaaaaaacgagaaacgaataaaaacgacaaaaaacgacaaattacg
acaaaaaaacgaaaaaacgacaataaaGAACGAGATATtttgccatccac
aaccccgacggaaagtgactgtaccaccatTCCCCTTAGTTCTATACGCT
ATTTAACCACTTACGGTTTAAAAGAACGCATGTGCAATTTGTGGGCTCCA
ATTGGCTCATCCACTGTATGtttgatctttttttaaagtggAAAAACTAT
ATCTGCTAAGTATCAGTAGAGATCCGGGGGTAGGCATACTAGTATAGCTT
GTTGtgtgaaaaatttgctttgaccacccctgatgttatacacgtttttt
ttattagagcaCCTTAGTTTTGGCTGAGCCTGAATGTGCTTATTTTCTCA
TCGAATTTCAGCCTCAGATGTTCTTATTGACGCTTTTAATTCGAAAACAA
ATTaacttaagaaaaaaattaaatctatAGCACTATTTATCTCTGCaggt
caaaagaaaaagaaattccaccaattatttaattattcaaaattcgaaac
attgCAATAACTGCAACttcttttctttgacttttaaagaaacttttctc
tcttttcCAAGGCTGGGCATGCTCTTAAGATGTTTTCAGCCTAAAtcttc
ttataaactgggttcttataaaaacgtgtaccatATTCGTACTTATTAGG
TCAAAGGCCATCGTTTGTCATGGTTAGATTATCTCAAAAGCTTTTACACT
TagcttttaggtaaaaaaaataGACTCGTTTGAGGGTTCGAGCCTTAGCA
ACCTTGTTGTTGACAAAAACAATTTGTTCTCCAAAATATATGTTGTATCT
ACAAGaaaaaaaGCTTCTGATGCCAatcccagttggcacacaacgttgct
tcaacgtttATATAATCTTctcaacgtccatataacgttagataaacgtt
atgGTGCTAGCTGGGATACTTCATGGTAAGCTCTAACCTAGTATCAAGAG
GTACAGAGAATTCTCGCTTATTTGAACTTTTATCATTCGAatcactctat
aattcgaacttattccctATCCCCGTCAAAGAAAAATCTACTTAAAATCT
ACTTTCTACAATTCGTATCTCTctttaatttgaataaaataaatttcccc
gtttcagttcgaattagagacagTCAACTGTATTTTGACTTCTTTTTGTT
TTAGCCGATTGGTTAGTCCATGATGGTATGGAATTCTCGACTCCTGATCG
CGATAACGATTTATATTCCGGAAAATGTGCTCAATTAAAAGAAGGTGGTT
GGTGGTTTAAGAAATGTGCACAGATCTCTTTTAATAATGATCACGCAGAC
AACAACAAAGCGCAATGGAATAGTTGGAGTAAAAGCTCTACTATTACTAA
AACATTGATGTTGATTAGAGAAAATCGAAATTGA Coding sequence (CDS) from alignment at sc0000289_pilon:224192..229125+ >XLOC_042475 ID=XLOC_042475|Name=XLOC_042475|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=1950bp|location=Sequence derived from alignment at sc0000289_pilon:224192..229125+ (Clytia hemisphaerica_ch_hm2_pilon)
GGAAAACATAAAATGCTTCGAAATTATATCAAACGATGTCTTCTCATCTT
TAATATAGCTACTGTTACAATATTTgcaaagaagcttttacaatTCCAAT
CCATCCATCAAAACACTGCTATCGAGGGTCCTGAACCATGGTTCGATGGA
CAAGTAACACACAAGgatttttgttttcacaaatgtgttaaaaatTACAC
TCACTGTTTTTATGTTCAATACAAAGAAATCGATGCTTCAACCTGGCTGT
GTAAACTTTTTGCACTCATAACAGATTTGTCCAATCATTTGGTGATTTCA
GAAGGGGAAATGTTGGCACGTTCATTTCATCCAAATGATTATAGTGGAAT
CGGGAAAACATAAAATGCTTCGAAATTATATCAAACGATGTCTTCTCATC
TTTAATATAGCTACTGTTACAATATTTgcaaagaagcttttacaatTCCA
ATCCATCCATCAAAACACTGCTATCGAGGGTCCTGAACCATGGTTCGATG
GACAAGTAACACACAAGgatttttgttttcacaaatgtgttaaaaatTAC
ACTCACTGTTTTTATGTTCAATACAAAGAAATCGATGCTTCAACCTGGCT
GTGTAAACTTTTTGCACTCATAACAGATTTGTCCAATCATTTGGTGATTT
CAGAAGGGGAAATGTTGGCACGTTCATTTCATCCAAATGATTATAGTGGA
ATCGATTGTCAAACGCATCATGATTTTGGACATAAAACTTCAGGTGTATA
CAATATCACACACAACGGAAAAACAATGACCGTGTATTGTCACATGTTTC
CAGATGGAGGATGGATAGCTATTCAAAGAAGAGTAAATGTTGAGGATCTT
TCATTTAATCAGAATTGGGAAGATTGTCAAACGCATCATGATTTTGGACA
TAAAACTTCAGGTGTATACAATATCACACACAACGGAAAAACAATGACCG
TGTATTGTCACATGTTTCCAGATGGAGGATGGATAGCTATTCAAAGAAGA
GTAAATGTTGAGGATCTTTCATTTAATCAGAATTGGGAAGTTTACAAGGA
TGGTTTTGGAGATCCAGCATCAAACTATTGGATTGGTAATGATAACATTC
ACTACCTGACCACCGGCAGAAACATGGATATCATGTTTATTGCAATAGCT
TGGGACTGGTCAGAAATAAATGCTCGATATGAGGGTTTTTTCATCGAGGA
TGAAACCGCCAATTATAAAGTACATtcagTTTACAAGGATGGTTTTGGAG
ATCCAGCATCAAACTATTGGATTGGTAATGATAACATTCACTACCTGACC
ACCGGCAGAAACATGGATATCATGTTTATTGCAATAGCTTGGGACTGGTC
AGAAATAAATGCTCGATATGAGGGTTTTTTCATCGAGGATGAAACCGCCA
ATTATAAAGTACATtcagGTACATATAAAGAGGGTACTTCAGTCGATTAC
AAAGGTACATATAAAGAGGGTACTTCAGTCGATTACAAAGCCGATTGGTT
AGTCCATGATGGTATGGAATTCTCGACTCCTGATCGCGATAACGATTTAT
ATTCCGGAAAATGTGCTCAATTAAAAGAAGGTGGTTGGTGGTTTAAGAAA
TGTGCACAGATCTCTTTTAATAATGATCACGCAGACAACAACAAAGCGCA
ATGGAATAGTTGGAGTAAAAGCTCTACTATTACTAAAACATTGATGTTGA
TTAGAGAAAATCGAAATTGACCGATTGGTTAGTCCATGATGGTATGGAAT
TCTCGACTCCTGATCGCGATAACGATTTATATTCCGGAAAATGTGCTCAA
TTAAAAGAAGGTGGTTGGTGGTTTAAGAAATGTGCACAGATCTCTTTTAA
TAATGATCACGCAGACAACAACAAAGCGCAATGGAATAGTTGGAGTAAAA
GCTCTACTATTACTAAAACATTGATGTTGATTAGAGAAAATCGAAATTGA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000289_pilon | genome | sc0000289_pilon:224192..229125 + |
Properties
| Property Name | Value |
|---|
| Aaloc | 748-975:4707 |
| Aaloc | 712-744:3236 |
| Aaloc | 523-708:2232 |
| Aaloc | 355-519:1553 |
| Aaloc | 1-351:1 |
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