XLOC_042353 (mRNA) -

Overview
NameXLOC_042353
Unique NameXLOC_042353
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000241_pilon:280639..287837-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_042353 ID=XLOC_042353|Name=XLOC_042353|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=7199bp|location=Sequence derived from alignment at sc0000241_pilon:280639..287837- (Clytia hemisphaerica_ch_hm2_pilon)
GGTATGGAACGTGCAGTCATTCTAAATTCATATGACGTCATCAAAGAGGC TTTAATGACCAGAGGTACTGACTTTGCGGGTAGACCCACAACTGACATAC CAAACAAAATAATCAGTAGAAATTTCACAAATATCGCTCACCGGGATTAT TCAAAAACATGGGCGTTTTTGAGAAAAGTTGCGTATAAAAGTTTACATGT CTATGGATCAGGAATGAAGAGGCTTGAAGATTTGATCACAGAAGAAGTGG ACAAAATGTGTTCGGTGTTGTCACGTGATGTTGGGAAACCAGTCTTGATC GACTATTATATCGGTAAGTATATATAATTTTTGTATTTCATATTTTTTCT TTTATAACAACAATCTTATAGGAACAATGAGGCTCAAAATTGTCAAAAAA TAAGAATAATTTAATAACAATCTCAAACCTGGAATTGCTCAATTTCAAGT AATCTAGGGATCATAGTAGTGAAAAATGGATTTAAATCCTAAAATACTTT AATTTCACCCTAGATAAGAAGGAATCACGAAAATTTTTACCTAGATTTTA GTATCGACCCCCCCCTCTGTTTGAAGTGGTCATTTAATATATAATCTCTC TTTCGATGATATTGGAAATACGTTTCGTGATTTTCTCTTCATAGTATCTT ACTATACTAAATGAGTTTATGAAAAATGTCTGTAACGCTAGCCCAGTAAC ATATTAAGGTTTCTAAAATTTGAACGCCGCGGCTGGAAAACCTATCCACC TTCGATACAAAAAGTCTCGCGCTAAGTTTGACAAGCGTAGAAAACTCGGA TTAGAGAAGACTAGCCGTCACCCGGCGTCGCACCCGCCGAGGAGTAGATA AGCACTCACTCTACGCAACGGCAAAGATGGCGGACGCAAAACCGTCAATC TGTAACTTACGGTACTGATTTTCCAGAAATTTTAACTCTTTGCTTAGTGA ACAGTGCTTAAAAGCAGAAGAAAGTTTACACCAAAGATGGAAGAATTGAT GCGGAAACTTTTTCCTGAAAATTACAGTTCAACCGGTGCTGTACAATCAG AATCTTTGGTGGCGAATGTACCCGTTCCTGACCTAGCTACCGTGCCCGTG TACCGTGACTCTCAACCTCCGAAAGAACCCACCTAAAGAACCACCGAAAA ACGAAAGAACTTCAATACGAATGTAAATGGGGTTGCAAAAGGTCATTTTC AAAGCCATCGGGAAGGTCAAATCACGAAAGAAAATGTCCGCTTAAAAGTC ACACTAAAGAATTCGAAGATCCTGTATCGAAAAAACTGTCAACCTTAAAG TGACATCACTTAGCCTAAATAAAGAATCGTCGTCAGAAACCGATAAATCC GAAAGATTTCCAGCCAAAAGTATGGGGCAATCACACAGTGAATGACATCG ATCAGATCCTTTCTGCCGCGTTCAATGAAACCAGTCAATGGCGGAAGAAT ATCTTCAACGTCCCAAGTGGTGCAGTCGGTAAAAGCTTTGTTGAGGAAAT CACTCGCTTGATAAATTTATGGAACAATCTGTCACCTTTGTCGAATGTCG CCTTGAAAGCCCTGTCCGTGTTACCATCGCTCCTTTTACAGAAACCATCA AAGACATCGAAATCGAGAGAACATACGAAAACATCTACAGCGACGTCTGG ATCTTTGGAGAGAAGGCGATTTTGACTCGTTGATCCGCGAAAGCCGAATG CTACAATCAAAATTTTCAAAGTCTGCTGCTGATCGAGTTACATCAATATC GAAACGATTTAGTGATTTGATGTTTCAAGGCAAAGTAAACGCAGCAATCA AACTCTTATCTAACTCAACGAATTCACACGGAATTGTACCAATCAACGAT ACCACGTTGCAAAATTCTTCAGCAAAAGCATCCTAGAGGTCAACCAAAGA TTGACGAGCTGATTGTTCAGGGACCATTCAACAAAATCGACCCCACGCTT TTTGAAGCCATCGATGAAGAACTCATAAAAAGTATGGCAGCTAAAACAAA AGGTTCTTCCGGCCCCTCCAAGATCGATGCACAAATGTGGCAACGTATCC TTTTGTCAAAAAACTTCGGTGATCGTTCTAGTGATTTATGCAAGGCGATT GCAAGGATGACGAGAATCATGTGCACTGAACAATGCAACAAAGAATCCGG TAGGGACATGGAGGCGTTCTTATCGTGCACCCTGATACCTTTGGATAAGA ACCCCGGCATTCGACCGATCGGCATCGGGGAAGTTCTTAGACGCATCGTT GGAAAGACTGTTACAACATTCCTGAGGAATGAAATACAAGAAGCAGCTGG CAATCTCCAACTGTGCGCTGGTCAGCTGGGTGGATGTGAGGCTGCAGTGC ACGCGATGGCAGACATCTACAACGACGAGAACACAGACGGGTGTTCTACT GGTCGACGCTTCAAATGCATTTAACAGCATAAATCGTGAAGTTATGATGC ACAACATTAACATCCTTTGTCCAACCTTGGCGATGTTTGCTACCAACTGC TATTCGAACCACGTCCGTCTGTTTGCGATTGGAGGAGCAGAGCTGTCGTC TTCTGAAGGTACAACACAAGGAGATCCGATCGCTATGGCTCTCTACGGCA TATGTTTGCTTCCCTTGACCGACACCCTCCGAAACGTACCAGATACCAAA CAAGTCGCGTACGCTGACGACATCACTGGTGCTGGTAAAACTTGTTGCAC TACGCAAGTGTGGGGGATGACCTAACGCAACTCGGTCCAACTATCGGCTA CTACCCAGAACCTTCTAAGTCATGGTTGATAGTAAAACCCGAAATGTATC AAACGGCACTCGACACATTCGAAGGTACGTCTATAAAGATCACAGCAAAG GGGCATAAACATCTCGGTGCTTCTGTTGGGGAAAAAAGCTACAAGAAGGA ATTCGTTTCAAATAAAGTCGAAACCTGGGTTAAAGAAATCAAAACTTTGT CAGACATTGCAATAACTCAACCCCAAGCTGCGTATGTCGCCTTCGTTATT GGCTACCGGCAAAAATTCAACTATATCATCCGAACTCTAGACGATATATC AGAATTGCTTCGACCCATCGAAAATGTCATCCGTTTTTCACCTCATACCA GCCATATGTGATGGCAGACAGTGCTCCGATATTGAAAGGAAGATCCTCTC GTTTCCGATCAAGATGGGAGGCCTTGGAATCATCAACATCGAGGATGAGG CTAAATTTCAAAACGAAACAAGTCGTTTGGCAACTAAAGTGCTAGTCGAG CGCATCATAACACAATCAAATGAATCAATTGATCCAAGTCAATCGAAAAA GATGTTGAAATCACTAGCCGCTAAACGAATTGGAGAACAAAAACGATCAC TCGATCAAATCGTTCAACAACTCCCATCAATCAACCAAAAAGCTTTGGAA ATCGCTTCATCTCAAGGTGCTTCCTCGTGGCTGACCACTCTTCCACTGAA AGAAGAGAATTTTGTATTGAATAAACGTGAATTCGCTGACGCACTCCACA TGAGGTATGGCTGGGAAATGAAGCGACTGCCCATCAAATGTGCCTGCTCA GCCAACTTCACAATCGACCATGCGCTATCTTGCCATCTTGGCGGCTACGT TATCCATCGACATAACAACGTTCGCGATACTCTGGCAACCCATGATGAAT GAAGTCTGTCACGACGTGTCGATCGAGCCCCAGCTTATGGATTTGTCTCG TGAACAGGTCGATTTACCACGCTCATCTGTTACTGGGAATGAAGCTAGGG CGGATGTTAGTGCTAATGGATTTTGGCAGCGGTATCAAAGAGCATTTTTT GACGTGAAGGTTTGCAACCTTTTAGCTCCGAGCTATCGCATAAAATCTAT TGGCACTACATTCACTTCCCTTGAAAGCAAAAGAAGAGAGCATATAACGA ACGGATTCTTCAAGTTGAGAAAGGGACTTTCACCCCATTAGTATTTGGTG CTACAGGTGGTGTAGCCCGAGAATGCTCAATTTTTATGAGCAGGTTAGCT GATAAAATCTCGGCAAAACAAAAATGCTCGAAAAGTGAGGTTGTGAATGG CATACGACGCAAAATTTCCTTCGTTTTGATCCGATCAGTGGTTGCTTGCC TGAGAGGTGAACGATCGAGTCGTTCGTTTACCCCAGAACAAGCGGCACTG AAGGACTCCAAACTGACGGAAATTTTGACGTCCTTGCATGTTTGAGTGTT GTGGGTTAGACGATTACCATAGGCTACTTTTTCGAGGGTTTCTTTTCAGT TTTTCATCATTTTGGTCTTTTCAGGTGTTTCATTGTTCTCTTTTTTTACA ATTTATACAAAAGTATGTTTGTTAATATATTTGACTCATGTTTTATGTAA ATAATTTTGATGACAAAGAAAAAAAAAAAAAAAAAAAAGTACTGCGACGT CTTAAAGTTACAAATAAAAAGGTGTGGCATTTTTGTTGCACGATTTCGAA TTATTTTATATCAACACACGCAACAAAATCCAATATTGTTGTTTGATGAT TAAACTTCGTCTAACATTATTTAAAAAGGTTTCAATGTTGGTTGCATTGC ATATGCGCCGGTCTTAAGCTGTCCTCATGTGAAGCCAACAAACGGGAAAA CCTTCAGTGCTCAACCGCAAAGCGCGAGTCTCTCCTTCACAACTAAGGTT TTTTCTTTCCTAGAAGCAACCCTCTCACCACCTCAGACACCTTTGGGCGT CTGCAACGACGGGTACCCTCCATAATTTTGACAGGGTCACTATGGCATTT CATTGAACACAAACTTCCGTTATCTTAAAAAGACATATAATCGAGGCTTA CAGACACAAAATTTTGACTAATGTACAAAGTTTAGAAGTATAATTTTTAT TATTGTATTCGGCATTTTAAGCCAAAACGATGTCAGGAATTAACCCACAT TATCGTATTTTAAAGGCTTTTGATGTGCAAGCAAAACCGTTAACCGGCGT TTGCGACGACGGGAACCGTCTAGTACAACACTAATTGGATTTAATACGGA CGTCCATTATTGAATAGCGCACCGCTGTTTAATTTTTGACATAATCATTA CTCTCGATGTGTTTGTACGAGTTCCAATCCCATCAACCTTTGCGTTAATC TCTTTTGCATGTTAATTGCATCGTTTGACAAAAGATATATAACAGTTTGC ACGTATCTTTAATTGAGCCGCGTTGAATTGTGGGATTGCAACTCGTACAA ATGTCAAAAGAGTGAAAAGTAATAATTATGACGTATGCATTGCGGAGCGC TATTTCACAAAAATAAACGTGTTTTGTGGTTCTCAAATTTTTGTTGACGT CAGCAATTACGTCTTTTTAAAACAACCTTCCGTAATAACTTTATTGGCTT CATTTTCATAAATAGGTTGTAATGTTCTTCTGAACGGGCATTGAAAATGC TTTCCAAATGTATGTAAATGTTCTGGTCTGTGAAATACACAAACCAATTT TTTGGGTCTGAGATTTAAATCCATTTAAGACCCCTACTCTCGGGTACCTA ATAGCCGCCCCCCCCCCCGCTAATTAATTTTTCGAAAATTTTCCACCCAG GACATTCTTATTCCAACCCCCCGCTTATTAATTTTTGGGAAAATGTTCTT GAAAGTTCCCTCTTTTGTCCTAATTCAGCTGTATTAGCCTCCTTTTCAAA AATTTTCCACCCAGGACATTTTTATTCCAACCCCCCCGCTTATTAAGTTT TGAGATTTTTTCCAACCCCCCCGCTTATTCCAACCCCCCCGGCTATTAGG TACCTGAGAGTAAACTACAATTGTGCAAAGTTTCATACTTTTACATAGGC TACGTCGTATCTTCCTTCGTTTAGAGCGTAAAACTCTTACTCTTCGGGAT ATGCGCACTGCTTTTGTTTTGAATATTGAACTTCTCCGGATACATTGCAT GCGCACTGAGGTTTTAATGAAACAATAGAGTTTCAAAACCGAAGCCAACC AGCTGTGTTTTAAACATTTTTTTATTTTAAATCTCTAAACTAACTTAAAG AAACTGATTTTCCGAGAATCTATTTTTAGCGAATTTGGCGAATTTCGACA ATAATTTGAAAAATTAGTTTTCGCCAAGTGTTCGGCAAACCTTCAAACTG TCTAGAGCTTTCATTTTTGGGCCAGGAGGAAAAATTTATCCTGCAAATCA CCAAAATTAGTTATCATTAAAATAAATTTCTTTAAAGTAATATTCATATT TTTCCTATCTTTACAGAAAATTCTTTGATCAACACGATGTGTCATATGTG CTACAGCAAAACGTATGATTTTGATGACCCAGAGTTCGTCCATATAATGG GCTACATCAAAATGTCCAATGAAGGTCTAACACCTAACCAAGCCATATCG ATTTTTCCTTGGCTACAATATTTCCCTGACACCGAAGCACTGAAGAAATT GAAACTTGCTGTAAAACAAGACACAGAATTCACACGTAAAATGTTTGATG AACATATCGCAACATTTGATCCTGAGAATATCAGAGATTTTACTGATAAT CTACTTCATTTTTCACAAAACAAGGAATTATGGAAAGATGCTGGTTTCGA GACAATCACTCGAGAAGAAATTGAACCTGTGGTAAGTTCACTATTGTTTG CAGGCGTGGAAACCCAAGCTGCTCTTTTACGTTGGCTTTTCCTCTATATG ATGCATTTCCCAGAATATCAAACAAAAATCTATGAGGAAGTTGGATCGAA TGTTGGACTGAAGCGTCGAATATCTCCCGAAGATAAAGATGTCTGTCCAA TAACTAATGCAATATTACTTGAAACTCATCGCATGGCATCTGTAGGCGCT CTTAGTCTCCCTCACAAAACGACCGTTGATACTTCAGCCGGGGGTCTTGC TATTCCGAAGGATACAATGGTCTTTGTCAACCTCTACAGCATACATTATG ATCCTACACACTGGGATGAACCAGAGAAATTCAAACCAGAGCGTTGGTTG AATGTTGATGGAAGTTTGAAGAAAGAGAAGCCAACACACTATCTTCCTTT CTCAGCTGGAACGCGGGTATGTATTGCAGAAAGAATGGCCAAAATGCAAC TATTCATCATCACTACTAACTTCTTTCGTAATTTTGAAGTTTCAAACGCT CCAGGAGAAGAATTACCAGGTCTAAAAGACGGCATCTATTGGTCAACCTT GAATCCACCTCGTCGTAAAATTGTTGTGACGAAACGAAAACATAACTGA

Coding sequence (CDS) from alignment at sc0000241_pilon:280639..287837-

>XLOC_042353 ID=XLOC_042353|Name=XLOC_042353|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=2592bp|location=Sequence derived from alignment at sc0000241_pilon:280639..287837- (Clytia hemisphaerica_ch_hm2_pilon)
GGTATGGAACGTGCAGTCATTCTAAATTCATATGACGTCATCAAAGAGGC
TTTAATGACCAGAGGTACTGACTTTGCGGGTAGACCCACAACTGACATAC
CAAACAAAATAATCAGTAGAAATTTCACAAATATCGCTCACCGGGATTAT
TCAAAAACATGGGCGTTTTTGAGAAAAGTTGCGTATAAAAGTTTACATGT
CTATGGATCAGGAATGAAGAGGCTTGAAGATTTGATCACAGAAGAAGTGG
ACAAAATGTGTTCGGTGTTGTCACGTGATGTTGGGAAACCAGTCTTGATC
GACTATTATATCGGGTATGGAACGTGCAGTCATTCTAAATTCATATGACG
TCATCAAAGAGGCTTTAATGACCAGAGGTACTGACTTTGCGGGTAGACCC
ACAACTGACATACCAAACAAAATAATCAGTAGAAATTTCACAAATATCGC
TCACCGGGATTATTCAAAAACATGGGCGTTTTTGAGAAAAGTTGCGTATA
AAAGTTTACATGTCTATGGATCAGGAATGAAGAGGCTTGAAGATTTGATC
ACAGAAGAAGTGGACAAAATGTGTTCGGTGTTGTCACGTGATGTTGGGAA
ACCAGTCTTGATCGACTATTATATCGAAAATTCTTTGATCAACACGATGT
GTCATATGTGCTACAGCAAAACGTATGATTTTGATGACCCAGAGTTCGTC
CATATAATGGGCTACATCAAAATGTCCAATGAAGGTCTAACACCTAACCA
AGCCATATCGATTTTTCCTTGGCTACAATATTTCCCTGACACCGAAGCAC
TGAAGAAATTGAAACTTGCTGTAAAACAAGACACAGAATTCACACGTAAA
ATGTTTGATGAACATATCGCAACATTTGATCCTGAGAATATCAGAGATTT
TACTGATAATCTACTTCATTTTTCACAAAACAAGGAATTATGGAAAGATG
CTGGTTTCGAGACAATCACTCGAGAAGAAATTGAACCTGTGGTAAGTTCA
CTATTGTTTGCAGGCGTGGAAACCCAAGCTGCTCTTTTACGTTGGCTTTT
CCTCTATATGATGCATTTCCCAGAATATCAAACAAAAATCTATGAGGAAG
TTGGATCGAATGTTGGACTGAAGCGTCGAATATCTCCCGAAGATAAAGAT
GTCTGTCCAATAACTAATGCAATATTACTTGAAACTCATCGCATGGCATC
TGTAGGCGCTCTTAGTCTCCCTCACAAAACGACCGTTGATACTTCAGCCG
GGGGTCTTGCTATTCCGAAGGATACAATGGTCTTTGTCAACCTCTACAGC
ATACATTATGATCCTACACACTGGGATGAACCAGAGAAATTCAAACCAGA
GCGTTGGTTGAATGTTGATGGAAGTTTGAAGAAAGAGAAGCCAACACACT
ATCTTCCTTTCTCAGCTGGAACGCGGGTATGTATTGCAGAAAGAATGGCC
AAAATGCAACTATTCATCATCACTACTAACTTCTTTCGTAATTTTGAAGT
TTCAAACGCTCCAGGAGAAGAATTACCAGGTCTAAAAGACGGCATCTATT
GGTCAACCTTGAATCCACCTCGTCGTAAAATTGTTGTGACGAAACGAAAA
CATAACTGAAAAATTCTTTGATCAACACGATGTGTCATATGTGCTACAGC
AAAACGTATGATTTTGATGACCCAGAGTTCGTCCATATAATGGGCTACAT
CAAAATGTCCAATGAAGGTCTAACACCTAACCAAGCCATATCGATTTTTC
CTTGGCTACAATATTTCCCTGACACCGAAGCACTGAAGAAATTGAAACTT
GCTGTAAAACAAGACACAGAATTCACACGTAAAATGTTTGATGAACATAT
CGCAACATTTGATCCTGAGAATATCAGAGATTTTACTGATAATCTACTTC
ATTTTTCACAAAACAAGGAATTATGGAAAGATGCTGGTTTCGAGACAATC
ACTCGAGAAGAAATTGAACCTGTGGTAAGTTCACTATTGTTTGCAGGCGT
GGAAACCCAAGCTGCTCTTTTACGTTGGCTTTTCCTCTATATGATGCATT
TCCCAGAATATCAAACAAAAATCTATGAGGAAGTTGGATCGAATGTTGGA
CTGAAGCGTCGAATATCTCCCGAAGATAAAGATGTCTGTCCAATAACTAA
TGCAATATTACTTGAAACTCATCGCATGGCATCTGTAGGCGCTCTTAGTC
TCCCTCACAAAACGACCGTTGATACTTCAGCCGGGGGTCTTGCTATTCCG
AAGGATACAATGGTCTTTGTCAACCTCTACAGCATACATTATGATCCTAC
ACACTGGGATGAACCAGAGAAATTCAAACCAGAGCGTTGGTTGAATGTTG
ATGGAAGTTTGAAGAAAGAGAAGCCAACACACTATCTTCCTTTCTCAGCT
GGAACGCGGGTATGTATTGCAGAAAGAATGGCCAAAATGCAACTATTCAT
CATCACTACTAACTTCTTTCGTAATTTTGAAGTTTCAAACGCTCCAGGAG
AAGAATTACCAGGTCTAAAAGACGGCATCTATTGGTCAACCTTGAATCCA
CCTCGTCGTAAAATTGTTGTGACGAAACGAAAACATAACTGA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
XLOC_042353XLOC_042353-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000241_pilongenomesc0000241_pilon:280639..287837 -
Properties
Property NameValue
Aaloc316-1296:982
Aaloc1-312:7200