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Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000217_pilon:347464..350784- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >XLOC_042342 ID=XLOC_042342|Name=XLOC_042342|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=3321bp|location=Sequence derived from alignment at sc0000217_pilon:347464..350784- (Clytia hemisphaerica_ch_hm2_pilon)
ATGACACTATTAGCGACGCCCTCGTCCGCCCAATTAATTCCTTCCGCCCC
TTTTCTTGACGCCAATTCTTCAATTCAAGATGTCAAAAGAAGGTAAGAAG
TCATGGCGAGAAACAACAATTTTCCCCATAAACTTATAACTAACTGAAAA
ATTGTAAAAGCCACACCATTCAAGCTCCAAAGGGGCTACAAAGGGAAATT
CTTGGATGGGAAATGAAGCCACTTATTTTCCATCCAAGATGTATGACCAA
CGTGCTTTTCACAAAACGCCGGATTGTTGAAAGTAAAATCTATCGCTAGG
TTCTAAAAATTATACCGAGTGAAAACAAAACACACTTCCCTTTACATTTA
ATCCGTCATCAAATCAATTTGATTATTTCGTTATTCTAAATATTAAGGCT
TCATTTTTCTTGCTTGTTAAAGGTTAAGATTCCACTCAATTCCACTCAAT
GATCCGCACATGCGCAGTGCCTATTATTGGCAAACTACCACTTCCCCTCA
GACCAGTAACTTAAATGAGCTTGGCATATTTCAAAATAGGCCTTTCCATA
AATTATTTTGAGAGCAACGAATGCCTCGTTTTGAGACCATTACCAAGGTG
ATTAAATCCCATGAATAAAGTAAACTTCTTTTAAACCCATCTGGATGGGA
ATCAATTACTATTTGAGAACGAGATAAAGTTGCTCATGGCGTCACTTATG
AAAAGGTCTATACCAGCGAAGCGAAAAATTCTTAGAAATAACTTTCATTT
TTATTTTCATTTCCAGAGAGATGTCAAAGAGTAGTATTAACATACGAAAA
GTTGAAGATAAAAATGAAAACACAACAAAGGTAAGCGTATTTTGTAGTGG
ATGTTTGGCTGAATATATCTTATTGCTCAAGATTTCAGTTAGACGATGCT
ATCCTTCGTTAAAGAAATACGGAAAATATACTTGCGCGGAGTTTACTGCC
GCAATGGAGGTTTATGGAAAAAAATCGGCAGTAGAAGCCAACCAAAACAA
AGTTCCACAATTGTACGTAAAGGTTCTGATTGAAAAATTCAAAAGTTTAC
AATCCGTCCAGGATCTGTATAGGTAGACAAGATCATTACCAATAAGGTTG
TTTACTAAAATAATAACAAAAACACAACATCTTTTGTAGAGAGAACCTGA
CACACCAAGAAGTAAGTCCGTTGCTACGCTACAGCCTTCCAAATCAAAGA
TGGCTACCGAAAACAAAAGCAGTCCCAATAGTGGAACTGCGACACCAACG
AAAGTACCTAGCAGCCCATCGAAAATCGGCGCGTTTGGCGCGTCATTGAA
AAGCAAATTACAAGCCATTAGCACACCATTGAAGACTAAAAGCGCCCCTG
GTAGCCCAAAGATACCCAAAGAAGGGCGTAAAAACAGGCGAATGTCCGCA
GTGACTATAGGTAGTAGTCGAAGCCTGCAAACGCCCACAATCAAAGTAAA
TGACAGCTCAGTGGATTTAGAGCAAGCATGGGCGGTAGCGACAACGATTA
AGTAGGTCAGCCCGCCCTGGGCGGCTTACATCAGCATCTTCTTTAAAGAA
ACGAAAGAAAAAGAAAAAACGATCAAAAAGCGAAGCTGGTAAGAGTTTTT
CATTTTCGTAATCTCTAAAGTTTCCATCCTGAAGAAAGTTAGTTGAATCG
CCACCTTTTCAATCAGAACATTAAGCCTTATTCAGTTATGGCACACAAGT
GTTGAGTTCAAGCCTTAGTTGGGAGTTACCACAGGAGCTCAATGATAATC
GAACATTTTCTGAATCCAGGAAGGAATCGTTTCGTCTCACTACTTTCAAG
TTCAATGCTATGAAAAGGGAGCCTACTTTTAGTATTTATCTCACGTTTAT
CGCTTCGTAGTACGAAGTATAGCCTCTTTAAGTAGTATTGCCTCTACGGT
GATGAATTTTGAAATTAGCGTAGATACAGGGACTGTGTACAGACAAACTT
TTAGTCTTCTCAAGCTAAATTTTGCTCTATTATGATTTTTTGAAGACGCA
GTGAAGTAACAACGTCATCTAGTCTTTTAATTCCTAAAGTGGCCACCAGC
CTGCGGTCAGAAAATACAGCCCCAATCAAGCAAAAATGGTTTGCCCCCCT
AAGTTCAAAGGGGGTTTCATTCTACGTACTACTGACTATTTTCGACCATT
TCTTGACTCTTTTTTCGTTTTAGTTCTCCAAGAGAAGAAAAAGGACAAGT
GGGCGGATTACGCCATGCAATACGCCAATGATATCGAAATGGAGGGCGGA
ATACAGAAAAAAGATAAATGGGATGAGACGTTAAAAACTGTATTGAGGCT
AGTGAATCACCACTCATGAAAAAAGCGAAAAGCAGCTGGAAAACAAACTT
TAAAAATGACATACTCGACAGATGAGGATGATTCTAGCGAAAGCGAAAGT
GAAAGTGACAATAGCGATAGTGACTCAAACAAAGGTAAAAAGAAGAAACA
AAAAAAGACGAAGAAGAATGAGAAATCTACTAAAGGAAAAGGAGAAGAAA
AGGAACAAAAATCAAGAAAATTATCAAAAAATGAAATGAAAAATATGTTC
GGGGACGATCAAGATACTTCTGAAAGTGAAAGTGGTTCAGAAGACGAGGG
CGACTTACATGCGCGATTATTAGCGAGTATGGAGAAAGATGTTATTCCTG
AAGAGTCAGAAGAAGACTTGATAACTTCACGGAAGCCGAAAGATAATGAC
ATTGCAAAGACTCCAGCACCGGCAAAAGCAGAGGAGAAGCCGACGAAAAA
GGAGAATCCGAAACAAAAACCACCAGAGACAATAACAAACGAAGTCAAAC
CCAAAGTACCAGTAACCGAAAAGCCGAAACCAAAGCAAAGTGAAAAACCC
GCTCCGAAAACTAAGGTAGAGAAAAAAGACAGTTTAAAAACACCGAGTCA
AGAGACCACTCAAAATAAGAATTATCAAAACGGGCCTGTTGTTGATTTCC
ATGAACAGATACGGAAGATTAGTACTGCGCATGGTCCGCAAGCACCTGAT
TTGTCTCAGTTAGACATACCAGAGAAACATAGGACATCGAGTCAAAATGA
GGACGATATTCATAACACTATAGATGACATTTTGAAAGAGGAACCTAAAA
CAGGGTCCAAGAGTCGACGTGGCTCAGCGAAAAGACCAATTTCGGCCACT
AATTCAGCGACGAATGCCATGGCCGAGGGTCCTGAAAATGAAGAAGAGAA
AATGAAAGCTTTAGAAGAACATATATTGGAAAATCATGGAAAACATAAAC
AGAAAGATGAAATGAAAAAGAAAGGGTCCGAAATTGATGATTTAATATCG
GAATTGAATTTGGATACGTGA Coding sequence (CDS) from alignment at sc0000217_pilon:347464..350784- >XLOC_042342 ID=XLOC_042342|Name=XLOC_042342|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=3506bp|location=Sequence derived from alignment at sc0000217_pilon:347464..350784- (Clytia hemisphaerica_ch_hm2_pilon)
ATGACACTATTAGCGACGCCCTCGTCCGCCCAATTAATTCCTTCCGCCCC
TTTTCTTGACGCCAATTCTTCAATTCAAGATGTCAAAAGAAGATGACACT
ATTAGCGACGCCCTCGTCCGCCCAATTAATTCCTTCCGCCCCTTTTCTTG
ACGCCAATTCTTCAATTCAAGATGTCAAAAGAAGAGAGATGTCAAAGAGT
AGTATTAACATACGAAAAGTTGAAGATAAAAATGAAAACACAACAAAGAG
AGATGTCAAAGAGTAGTATTAACATACGAAAAGTTGAAGATAAAAATGAA
AACACAACAAAGAGAGAACCTGACACACCAAGAAGTAAGTCCGTTGCTAC
GCTACAGCCTTCCAAATCAAAGATGGCTACCGAAAACAAAAGCAGTCCCA
ATAGTGGAACTGCGACACCAACGAAAGTACCTAGCAGCCCATCGAAAATC
GGCGCGTTTGGCGCGTCATTGAAAAGCAAATTACAAGCCATTAGCACACC
ATTGAAGACTAAAAGCGCCCCTGGTAGCCCAAAGATACCCAAAGAAGGGC
GTAAAAACAGGCGAATGTCCGCAGTGACTATAGGTAGTAGTCGAAGCCTG
CAAACGCCCACAATCAAAGTAAATGACAGCTCAGTGGATTTAGAGCAAGC
ATGGGCGGTAGCGACAACGATTAAGTAGGTCAGCCCGCCCTGGGCGGCTT
ACATCAGCATCTTCTTTAAAGAAACGAAAGAAAAAGAAAAAACGATCAAA
AAGCGAAGCTGAGAGAACCTGACACACCAAGAAGTAAGTCCGTTGCTACG
CTACAGCCTTCCAAATCAAAGATGGCTACCGAAAACAAAAGCAGTCCCAA
TAGTGGAACTGCGACACCAACGAAAGTACCTAGCAGCCCATCGAAAATCG
GCGCGTTTGGCGCGTCATTGAAAAGCAAATTACAAGCCATTAGCACACCA
TTGAAGACTAAAAGCGCCCCTGGTAGCCCAAAGATACCCAAAGAAGGGCG
TAAAAACAGGCGAATGTCCGCAGTGACTATAGGTAGTAGTCGAAGCCTGC
AAACGCCCACAATCAAAGTAAATGACAGCTCAGTGGATTTAGAGCAAGCA
TGGGCGGTAGCGACAACGATTAAGTAGGTCAGCCCGCCCTGGGCGGCTTA
CATCAGCATCTTCTTTAAAGAAACGAAAGAAAAAGAAAAAACGATCAAAA
AGCGAAGCTGTTCTCCAAGAGAAGAAAAAGGACAAGTGGGCGGATTACGC
CATGCAATACGCCAATGATATCGAAATGGAGGGCGGAATACAGAAAAAAG
ATAAATGGGATGAGACGTTAAAAACTGTATTGAGGCTAGTGAATCACCAC
TCATGAAAAAAGCGAAAAGCAGCTGGAAAACAAACTTTAAAAATGACATA
CTCGACAGATGAGGATGATTCTAGCGAAAGCGAAAGTGAAAGTGACAATA
GCGATAGTGACTCAAACAAAGGTAAAAAGAAGAAACAAAAAAAGACGAAG
AAGAATGAGAAATCTACTAAAGGAAAAGGAGAAGAAAAGGAACAAAAATC
AAGAAAATTATCAAAAAATGAAATGAAAAATATGTTCGGGGACGATCAAG
ATACTTCTGAAAGTGAAAGTGGTTCAGAAGACGAGGGCGACTTACATGCG
CGATTATTAGCGAGTATGGAGAAAGATGTTATTCCTGAAGAGTCAGAAGA
AGACTTGATAACTTCACGGAAGCCGAAAGATAATGACATTGCAAAGACTC
CAGCACCGGCAAAAGCAGAGGAGAAGCCGACGAAAAAGGAGAATCCGAAA
CAAAAACCACCAGAGACAATAACAAACGAAGTCAAACCCAAAGTACCAGT
AACCGAAAAGCCGAAACCAAAGCAAAGTGAAAAACCCGCTCCGAAAACTA
AGGTAGAGAAAAAAGACAGTTTAAAAACACCGAGTCAAGAGACCACTCAA
AATAAGAATTATCAAAACGGGCCTGTTGTTGATTTCCATGAACAGATACG
GAAGATTAGTACTGCGCATGGTCCGCAAGCACCTGATTTGTCTCAGTTAG
ACATACCAGAGAAACATAGGACATCGAGTCAAAATGAGGACGATATTCAT
AACACTATAGATGACATTTTGAAAGAGGAACCTAAAACAGGGTCCAAGAG
TCGACGTGGCTCAGCGAAAAGACCAATTTCGGCCACTAATTCAGCGACGA
ATGCCATGGCCGAGGGTCCTGAAAATGAAGAAGAGAAAATGAAAGCTTTA
GAAGAACATATATTGGAAAATCATGGAAAACATAAACAGAAAGATGAAAT
GAAAAAGAAAGGGTCCGAAATTGATGATTTAATATCGGAATTGAATTTGG
ATACGTGATTCTCCAAGAGAAGAAAAAGGACAAGTGGGCGGATTACGCCA
TGCAATACGCCAATGATATCGAAATGGAGGGCGGAATACAGAAAAAAGAT
AAATGGGATGAGACGTTAAAAACTGTATTGAGGCTAGTGAATCACCACTC
ATGAAAAAAGCGAAAAGCAGCTGGAAAACAAACTTTAAAAATGACATACT
CGACAGATGAGGATGATTCTAGCGAAAGCGAAAGTGAAAGTGACAATAGC
GATAGTGACTCAAACAAAGGTAAAAAGAAGAAACAAAAAAAGACGAAGAA
GAATGAGAAATCTACTAAAGGAAAAGGAGAAGAAAAGGAACAAAAATCAA
GAAAATTATCAAAAAATGAAATGAAAAATATGTTCGGGGACGATCAAGAT
ACTTCTGAAAGTGAAAGTGGTTCAGAAGACGAGGGCGACTTACATGCGCG
ATTATTAGCGAGTATGGAGAAAGATGTTATTCCTGAAGAGTCAGAAGAAG
ACTTGATAACTTCACGGAAGCCGAAAGATAATGACATTGCAAAGACTCCA
GCACCGGCAAAAGCAGAGGAGAAGCCGACGAAAAAGGAGAATCCGAAACA
AAAACCACCAGAGACAATAACAAACGAAGTCAAACCCAAAGTACCAGTAA
CCGAAAAGCCGAAACCAAAGCAAAGTGAAAAACCCGCTCCGAAAACTAAG
GTAGAGAAAAAAGACAGTTTAAAAACACCGAGTCAAGAGACCACTCAAAA
TAAGAATTATCAAAACGGGCCTGTTGTTGATTTCCATGAACAGATACGGA
AGATTAGTACTGCGCATGGTCCGCAAGCACCTGATTTGTCTCAGTTAGAC
ATACCAGAGAAACATAGGACATCGAGTCAAAATGAGGACGATATTCATAA
CACTATAGATGACATTTTGAAAGAGGAACCTAAAACAGGGTCCAAGAGTC
GACGTGGCTCAGCGAAAAGACCAATTTCGGCCACTAATTCAGCGACGAAT
GCCATGGCCGAGGGTCCTGAAAATGAAGAAGAGAAAATGAAAGCTTTAGA
AGAACATATATTGGAAAATCATGGAAAACATAAACAGAAAGATGAAATGA
AAAAGAAAGGGTCCGAAATTGATGATTTAATATCGGAATTGAATTTGGAT
ACGTGA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000217_pilon | genome | sc0000217_pilon:347464..350784 - |
Properties
| Property Name | Value |
|---|
| Aaloc | 1195-1776:583 |
| Aaloc | 1015-1185:754 |
| Aaloc | 901-1008:862 |
| Aaloc | 772-897:988 |
| Aaloc | 766-771:995 |
| Aaloc | 715-762:1043 |
| Aaloc | 709-711:1046 |
| Aaloc | 610-708:1147 |
| Aaloc | 499-606:1843 |
| Aaloc | 157-495:2183 |
| Aaloc | 94-156:2555 |
| Aaloc | 1-90:3322 |
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