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Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000044_pilon:1247417..1251479+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >XLOC_042264 ID=XLOC_042264|Name=XLOC_042264|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=4063bp|location=Sequence derived from alignment at sc0000044_pilon:1247417..1251479+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGATGAGATCAATGTTGGTGAGATGTCAATATTGTCAGGTAAATAGATT
ATTTGTTTTTTGAGATGTGGTCCCATTTTGAGGCAGTTATAGAACACAGC
CCCAGCAGTTCAAAGACCTGAAAAGGGGTTATTTGTGAAAATTATTGCTG
CTGTTTTGTTTAAATCATTTTGTTTACTTTCATGGTCTGCTAtttttttA
GATCAATCGTGTTAATGCTTTTCTGTCAAGTAAACGTTGCATTGTTGCAA
GTACACAACAATATGCTGTAAGTCAAATTTCAAGTCTGACAAGAAAACCT
TATCCTGTGTAGCTCTGTCATTTCAGaagtattttctgatttttccgacc
cttagtgggactttggaagtccaaaaaaggtacccatAAAGGTGCACATA
CCTTTTGGGATAATGAACATAATGTTGTTTCTTTATAACATTCTGCAAAC
ATGACAAAAtggtattttgattttgaaaaacatgcTCAGGCCAAATTCTT
gaaaggcaaggcagcgtcCAATAGAGACCAAGAAGGACACTTTTTCTgcc
gttttttcataagaaaggctgtttttaccatgATTTTTCATAATTCAAGA
AGGGCAGCGTTCGATAACCGGACGCTAAAAAGGCATGAAAAATGGTCTGA
TGCTGAGGCAGGTACTTGTTAAAGcaaaattatttattaaaattgCTCTT
TTTTCTATGCTATTTTGATGTATGTGTTTATTTATTATACCAATACAATA
ATGCTTTTGATTTAGAAAACAGTTGCTATACATTCCAATATCACAGTACA
TGATCTtgcttcaaaattgaaaaagAaaagcAaaacTATTCTTGAGCTGT
TAGACGAGTATGGTTATGTGGTTGATCATGGCATCAACACTGGTATGTGT
CCATAAATGTTATATtcaggaaaaattattttttgataagGATAATTCGG
ATGTAAGGTTAGTTCTATTGCTTTATCTTTCACAAAATTCGAGTGATAAA
TACCatcaacggctctaacttggaacGAGTGGTCGAAGCATGGAATCGTT
GATATCTGGACTGTATTTTAACTTACTGTTGAAtcaatctctttgacaac
aagtttgttttgatacgtCAACCaggtttatcaatcaaacttttttcaca
gtgcCACAATCACAaccatgaaaaaaaaacttaactttTTATATATCTGT
GTTGGGGTGCGCGCACGATCGCATTTTACGCATTTCTCATCGGATCGCTA
AGATATATGTTCCTTTTGCGGAGTGAAAGTCTACCTTGTGAGAGTAGCGT
ATTCACATTATTTGCAATCTATGATTTGCAGTTATGttaatcaaatgact
ttggaggttcggtgaaatggagGCCGAATTGCTGTCTCATGTTTTGttag
atagtcccaagttagagccatTGACGGTAAAAGAGGATTTGGATGAACTA
TTTCTCCCATTGAAAGTTCAACTCAATGGGCAATACTAAAGTTTTGTTAC
CAGTCGACTTGATAAAACAAAGCTcgctttcttttttatagacATTATAT
AACGAAAAAGAATATTGCAATTTGTGAATAGTAACTTGCACCATATTTCT
TGCCTTATGCTTACAGCTCTGGATATTGACATTGCTGGCGCCATAGCAGA
TGAATTTGGATACAAAGTGACaaacgaaaaagaaatgaaagaagaaaaat
atcatGAAGATGCTGGTGTTTCATTACCAAGGTTTGCCTTATTGATTATT
AGACAAATTGGATCATGCAAATTTTAAGTGGAGTCTCCAAATTTGAGATA
ATATGATAATATGATAAATATAATTAAAAtagttttgtaaaaaaatattt
tggctaattattttaaagtgtttttgcacatgtcataaaaattaaatttg
aaatagtTATTACAGATTGTCAGATTGTGTATTGTTAGAATAATGTTATT
GTCTTTAGACCACCCGTTATCACCATAATGGGCCATGTTGACCATGGTAA
GACTACGCTTTTGGACTATCTGAGAAAAACACAAGTTGCAGAAAACGAAG
CGGGTGGAATAACTCAAGCCATATCAGCATTTTCAGGTAAAAAGAAGTTT
CCTTCTTACATGTTTTAGAATTGCCAAACTTACCTATAACActcattttt
tgagattttattgACCTGTTGACAAGCACATAAGGAAAGAAAATATGATT
CAATAAGATGACATAGTTTGGATAGCAATTTGTTTTGTTCCGATGTATTA
TTTACTATTAAGAAATACATTCCACAAAATATGCGTCTTAAATCTCTTGA
AACTCCATAAATTTCTCTTGAGTCAAGAGGGATAGGCTTGAGCTAATAAA
AGGTGGATCTGTGGTACAAATTAGCCCAGATAAGAGATCCAGTGGCAATC
AATACTCAAGTTTTTAAAAAACGTGATCATTCATCAATTACTTATAAAAC
GTTGATACATAGATATCCAATAATTGTTCAACAGGTAATTCTTTGATAAA
GGGTCAATAAAGAATCATATAAAGGATCCTTACTCAAGATTTCTAGAGCA
GAATCTTTATTTATCCTTTAAATTGATCCTATGGTGTGCATTTATCTGGA
AGAATTCAGCTAGTACGACTGTTTTGATggtaaaaactttttcatcaatA
CATTTCAGTGAAAGTACCAGGATTGTCAGACAGTATCACATTTGTTGACA
CCCCTGGTCACGCAGCATTTAATAACATGCGTGCAAGAGGTGCACAAACC
ACTGATGCTGTTGTGCTCATTATTGCTGCAGATGATGGAATCATGGAGCA
GACAGTAGAATGTATCAAACATATCAAGAAAGCCGATGGTTTGTTAATGA
AGATATTTAGTTTATaagtctttgtttttgtttgcatGGCAGACATAGCT
AGATTATCCAAACGTTCAAGCTCAATTCCCAGCAGGTTAAATCTGTTTTG
GAAATTGTGACTTTTACTGGGCACAAAGGGCcaactaaatgtttttttat
ctttagttCCTTTGATTGTGGCTTTCAACAAAATGGATAAGCCTAAGGCA
AATACGGTATGTTCATGAGTTGATAATATTGTTGAGCAATATAGCTAACG
TTGTTGCATATTTATCAATATGCTTAGATGGAGACATATAAGTTTTACTT
TCTAACTATTCACTGATTTACCATTTCCTTATGTGTTTCTGTTGTAGCAG
CTTAGGATCTGCTACATATATTCGAATGTTAACCGATCTTTTCACTTTAA
ggataaaatcaagaaagattTGTTGACTCACGGATTACAACTCAAGGAAC
AAGGTGGTGACATTGACTGTGTTGAAATATCAGCTTTGAAGGTAAATTTA
GGTGTTATATATGGCCTGTACTACATCTATTTTATCCTCGCGGCTGGCTT
TTGAGGGGTCTGGTAATGGATTTATAAGGAAATGAAATCAATGACTTCAG
ACATTTTGACGTTTTAACTTCCTGGTAAACTCGAACTACCTTCAATTTTC
ATGcagaatctttttgttttgttttataataaaaagaacaacaTAGTGTA
TATTTCCCACTCTGACATACTTCCAGGAAGGCTGAAATGACAACTCCTTg
ataatgttttctttttgttactCAGGGCAATAACGTAGATGAGCTTCTTG
TATTATTAAATGGGCTTTCAAAGAAACACACATTCAAAGCTTCATATGAT
GGTCCAGCGCAGATTGTTGTTCTTGAAACCGAAAACAGTAAACAGAAAGG
GTTggtatcaaataatttttttaatagttTCAAATCGAAAAAGTGgcaaa
ttttagattttaaaatcattttctgACTTGCTATCGAGTAGTCTATGTAC
AATTATGAAAGAATAAACTGTCTTGCTTTTAACTGCTTTTATGATGTTCT
GTCATAAGATAATACATGTTCATCTTACAATAtattgcaatatttttttt
cttgttttttgtcTAGTATGACATCAATGGTTCTTGTCAAACATGGTCAA
TTATCTAAAGGTAAAGTGCTGATGACAGATGATGGTTTCATTAAGGTGAA
TATTCATCTTTGA Coding sequence (CDS) from alignment at sc0000044_pilon:1247417..1251479+ >XLOC_042264 ID=XLOC_042264|Name=XLOC_042264|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=2034bp|location=Sequence derived from alignment at sc0000044_pilon:1247417..1251479+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGATGAGATCAATGTTGGTGAGATGTCAATATTGTCAGATGATGAGATC
AATGTTGGTGAGATGTCAATATTGTCAGATCAATCGTGTTAATGCTTTTC
TGTCAAGTAAACGTTGCATTGTTGCAAGTACACAACAATATGCTATCAAT
CGTGTTAATGCTTTTCTGTCAAGTAAACGTTGCATTGTTGCAAGTACACA
ACAATATGCTAAAACAGTTGCTATACATTCCAATATCACAGTACATGATC
TtgcttcaaaattgaaaaagAaaagcAaaacTATTCTTGAGCTGTTAGAC
GAGTATGGTTATGTGGTTGATCATGGCATCAACACTGAAAACAGTTGCTA
TACATTCCAATATCACAGTACATGATCTtgcttcaaaattgaaaaagAaa
agcAaaacTATTCTTGAGCTGTTAGACGAGTATGGTTATGTGGTTGATCA
TGGCATCAACACTGCTCTGGATATTGACATTGCTGGCGCCATAGCAGATG
AATTTGGATACAAAGTGACaaacgaaaaagaaatgaaagaagaaaaatat
catGAAGATGCTGGTGTTTCATTACCAAGCTCTGGATATTGACATTGCTG
GCGCCATAGCAGATGAATTTGGATACAAAGTGACaaacgaaaaagaaatg
aaagaagaaaaatatcatGAAGATGCTGGTGTTTCATTACCAAGACCACC
CGTTATCACCATAATGGGCCATGTTGACCATGGTAAGACTACGCTTTTGG
ACTATCTGAGAAAAACACAAGTTGCAGAAAACGAAGCGGGTGGAATAACT
CAAGCCATATCAGCATTTTCAGACCACCCGTTATCACCATAATGGGCCAT
GTTGACCATGGTAAGACTACGCTTTTGGACTATCTGAGAAAAACACAAGT
TGCAGAAAACGAAGCGGGTGGAATAACTCAAGCCATATCAGCATTTTCAG
TGAAAGTACCAGGATTGTCAGACAGTATCACATTTGTTGACACCCCTGGT
CACGCAGCATTTAATAACATGCGTGCAAGAGGTGCACAAACCACTGATGC
TGTTGTGCTCATTATTGCTGCAGATGATGGAATCATGGAGCAGACAGTAG
AATGTATCAAACATATCAAGAAAGCCGATGTGAAAGTACCAGGATTGTCA
GACAGTATCACATTTGTTGACACCCCTGGTCACGCAGCATTTAATAACAT
GCGTGCAAGAGGTGCACAAACCACTGATGCTGTTGTGCTCATTATTGCTG
CAGATGATGGAATCATGGAGCAGACAGTAGAATGTATCAAACATATCAAG
AAAGCCGATGttCCTTTGATTGTGGCTTTCAACAAAATGGATAAGCCTAA
GGCAAATACGttCCTTTGATTGTGGCTTTCAACAAAATGGATAAGCCTAA
GGCAAATACGgataaaatcaagaaagattTGTTGACTCACGGATTACAAC
TCAAGGAACAAGGTGGTGACATTGACTGTGTTGAAATATCAGCTTTGAAG
gataaaatcaagaaagattTGTTGACTCACGGATTACAACTCAAGGAACA
AGGTGGTGACATTGACTGTGTTGAAATATCAGCTTTGAAGGGCAATAACG
TAGATGAGCTTCTTGTATTATTAAATGGGCTTTCAAAGAAACACACATTC
AAAGCTTCATATGATGGTCCAGCGCAGATTGTTGTTCTTGAAACCGAAAA
CAGTAAACAGAAAGGGGCAATAACGTAGATGAGCTTCTTGTATTATTAAA
TGGGCTTTCAAAGAAACACACATTCAAAGCTTCATATGATGGTCCAGCGC
AGATTGTTGTTCTTGAAACCGAAAACAGTAAACAGAAAGGTATGACATCA
ATGGTTCTTGTCAAACATGGTCAATTATCTAAAGGTAAAGTGCTGATGAC
AGATGATGGTTTCATTAAGGTGAATATTCATCTTTGATATGACATCAATG
GTTCTTGTCAAACATGGTCAATTATCTAAAGGTAAAGTGCTGATGACAGA
TGATGGTTTCATTAAGGTGAATATTCATCTTTGA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000044_pilon | genome | sc0000044_pilon:1247417..1251479 + |
Properties
| Property Name | Value |
|---|
| Aaloc | 922-1017:3968 |
| Aaloc | 796-918:3626 |
| Aaloc | 706-795:3252 |
| Aaloc | 658-705:3009 |
| Aaloc | 478-654:2661 |
| Aaloc | 349-474:1960 |
| Aaloc | 235-345:1619 |
| Aaloc | 106-231:766 |
| Aaloc | 40-105:202 |
| Aaloc | 1-39:1 |
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