XLOC_041926 (mRNA) -

Overview


Name	XLOC_041926
Unique Name	XLOC_041926
Type	mRNA
Organism	Clytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence

The following sequences are available for this feature:

mRNA from alignment at sc0000053_pilon:1093381..1097256-
coding sequence from alignment at sc0000053_pilon:1093381..1097256-

mRNA from alignment at sc0000053_pilon:1093381..1097256-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>XLOC_041926 ID=XLOC_041926|Name=XLOC_041926|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=3876bp|location=Sequence derived from alignment at sc0000053_pilon:1093381..1097256- (Clytia hemisphaerica_ch_hm2_pilon)
ATGAAGAAACGTTACTTTTATTTGATCATTGTGCTCACCTGTGCTATTTA
CGTCAGTTTGTTTTTACGACGTCTTAAACCGTCGACGGCGATAACGACGT
CGATGTCGAAGGAAGATGTTTCGAGCAACGAGTTGAGGTCCACTGAAACA
ATTGAAAATGATCACAGAACTGTTGAGATGTTTCAAAGGAAACTTAAAGG
TGCAAGCTCGACAACTGAGAGTCACGGAGAGGCGACGAGTGAATCTTTAC
CGTCTAATGAAAAAGATGTTACGCTTTTGACGAGGAAAAAAATGGAGTTG
ATTGATAATATTTTTCAAAAGAAACTGGATAGCGAAGGCTCCACAACTGA
AAGCCAAAGAGAGACTCGTGAATATTTATCAGTTGTTGGGAAAGGCGTTA
CAAATAACGAGAAGGAGAACGTCAAAAGGACTACGACGGATATGTCAATC
CGACAGTGGACAACTGACGACAAAGAAACGTCGACTACCGACCATTTCAC
GTCATCTAAACCCAACGAAAAGAATTCCTCTTTAAAAGACGATCATTCAA
CGGATGATTTTCAATCTACTGAAAGTTCTTCCCAATTTTCTACCGATGAA
TCTTCAGAATCGCCGGACGTAACGGAAGATCTTCCGAGCGGAAGTCCGGA
CACAGACGATCGTGATATTCAATACTGTAATCCGGACAGTATCTACCGCA
AAAATTCTTTTAAATTTTCAAGAAAAGATGTTTCTTGCGTCCCTGTGAAA
GCTTCCGAGAAAAGTTGTAAATGGGCGGAAGAGTTATACCACCCTGATAA
AAAACTGCAAAAATGCGATCCCGCCCAAGTGGTGGAAATTTGTTGGGCGG
AAGGTGGAGGGTACCGATGTTCGATGGAGAGCTGTATGAGTCATGGGAAA
CATTACGTAATGGTTTGGAAAGTGAACGATAAGAATGGGAAGTTAGAGAA
GTTCAGATGGTTTAATGTGGTTAAAGATTTAGAGAAAAGTTTATCGGTAA
TCTCTCGAATGACGCAACGCGAAGGATTTGGGTTTTTACTGCTTCAGTGC
GTTAATATGAAAGAGAAGGAATCAGAAAGTAAAGATTTAGAGCTAGGACA
ACTTTTGATTTTGCAGCCAACCTATCGATCAGGGAAAGCAAGCAAAGAGA
CGGTTAATATAAATTTGCTTTGGGTTGATTCAGTTTCGAGATCACATTTT
TATCGTTCTTTACCCAAAACCATAAACACATTCGAAAACATAAATCGAGA
CAAAAGTACTAAAACGGAAATTCTTGACTTCGAATTATTTCAAGCTGTCG
CTGGCCACACTAACCATATTTTACATGGTCTTTTCACTGGAAATCTTTTT
CCAAAAGATGCGACAAAGAATGAAAAACAGGTGGTAGAGTTCGGTGCGTT
TTTTAAACGTTTTTCTGATGAAGGATATCGAACTCTATATCACGATGACC
TCTGTTACGAACAGGTTTGGGGCTTACGACTCAATCTGGGTACACCAACG
ACATGGAAAGACTTCAAAAGATTATTAAATGCAAATTACATCGATAGTAC
AGGTACGTGTTTGTTTACTTTATTCTTGGTAAAAAATCATTTCTTGAAAA
AATGCAATTATACGAGGGGTTTTACGATTACGATGTTTTTTCTTTTAGAA
GCATAACGTTTGTAAGTATATACAGGCTTAGTTTTTGGTACCTAAACAAT
GTCTGCTAAGCATAATGCGATCCCGGAATAGAGACAGACAGGCTTGACAG
AGAAAAAAGCGAAATTCATTTTTTCAGCAGTTTTGATATGAAAACAATTT
TGCAAATATAAATTAAGTGATCAACAAACTGCCTTGCTGGCTGACCCCTG
GCCGATTTTTTATTCATAATAGCCAGCGTCTGGTTTTTTTTATATACTTT
TCAGCTTAAGCTTAAGGGCTCTGACCTTTATATATCCCTGGACCAAGCTA
TATCCGCCATCTTCTATCGAAGTTTTTTTGAATTGGTACCCGTAAAAAAG
CCATTGGAGTGTTAAGAATTAACGTCTAGCGGCGCTACATCATCAAAAGT
TTTCGAGGGAAAGTAGATCTAGCGCTCTCGATGCATTTACACCGCTATTG
AGTAGTGCCGCCATTAGGGTACCACTTTTCAAAAATCTCCGATCTAAAAT
TTTGCTTGGCCGGGATTGAGAAACTTGGTCCAGGGTATATAAAGGTCAGT
GCCTAAGACAAGCAAATTTTAATCACTTTCGACAAAATCAAACGAATGCA
AAGCAGAAAATCAGCTGTCTAAAGTAAACCTTATTGTCGACCTAATAGAT
GTCTGAAATCTGTTTTTTTTTATACAGTTGACGCTCTCTAATTCGACCTT
CAAGGGGAATTGGATTTTCATCGAATAAGGGAGCCTATCGAATAATAGAG
CGTTGTTTATAAGGAATTCTTGATGACTGGGACTATCGAACAATGGAGCG
TATCGAGTAGTAGAACGTCGAATTAGAGAGCGTCGACTGTATGTACTATT
CGGCAATGTTTTAATTTTCAGGATTGACGTTTTCCAGTTGTCATCTCCTT
CGTCACAATGGTATAGACACTCCGTTCAACGGCCCGCAAGACCGATCATT
GTGTTTCAACGGTCGGTTCATGGATGCTTACCATTTGACCTTCAACCATC
ATCAACATAAATATTCTGTTGAGCAACAAAATAAGTTGATCACTTTCAAC
GTCATTTGTGTTGGACATGATGATAAAGGAACCAGAATCCAATCCATTGA
TCAAGATTTATTACATTATGTACAAAAGATGAGCGAAGTTAAAAACACTC
TTACTCTCGTTTTCGCAGACCATGGCAATACTTATACTTCGTACGCCATG
GGCGTTCAAGGGCGCTTTGAACAATTCCACCCAAGTTTTTTCATGATTGT
TCCCGAGGGCGTTCAAAAATCACTTGGTGCAAATATCATGAATAATTTAA
GAGAAAATCAAGTTAAATTAGTCTCCATTATGGATTTACATAAAGCTTTA
GTTGCGTTACCTAGACAACCACAATCAATAGGTCTATTCGGTGAAATACC
CAATGAGAGAACATGTAATGATTTACCGCTTGTATTTCCAAATTTTTGCG
TTTGTCAGAATTGGTCGACCCCTTTGAAGAATGACCAAACGACGGTTCAT
TTTCTTCATTTCGCGGTCGGGAAATTAAACGAAGAAATCACCAAATCACA
GAATGATATTTCACAGAACGGTCTACCGGCCCGATGCAAATTACTCGTTC
CGACCAGTTTCGATTTTATTACTGAAAGAATTAACGGGAAAACGAAAGTT
ACTTCTTTCGATTTCGAAGTTCCCTCAGGAAATTTTGTGACGGAAAAGTA
TGAAAGGTTTCACGTTGAAATTGAATCATTAACTCTGGTTGGAGGCAGCA
ATTCCTTGAAAATGAAACTTGTAACTTTTGATCGCATTTCTCCTTACGGA
CCCTATAGAGCATGCGCCAACAAGAACGCTAATATCAAACTTTGCATTTG
TGATGACGAGAATACTATGATAAGAAGTAGTCGCAGAAATCGGATTAAAC
TTTCAAAACTTGACTTACCGAATCGGACAACAATGAAATCCGTTCGGAAT
CAACCATGCTTACTCGTACACAAGATTGTATATCCCGATTCTAAGAAAAA
CGGATTTCACTCGATTGCTTATCATATCATCAACAAATGTTCAAACTCCT
TTCAAGTGACTTTATTATTTGGCAACAAGTTGGTGAATTTACGCACTTCT
ACGCCTCTCCCGTTTCGTGGCGCTCTCAGACCGTACAGGGCGGTGTTTAT
GGGGAATATTGTAAGATTGAAGAAAGTTGAAAGAGTAGTCGAACCAAAAG
TAAAAGTCAAAGTTCTGAAATTATAA

Coding sequence (CDS) from alignment at sc0000053_pilon:1093381..1097256-

>XLOC_041926 ID=XLOC_041926|Name=XLOC_041926|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=5814bp|location=Sequence derived from alignment at sc0000053_pilon:1093381..1097256- (Clytia hemisphaerica_ch_hm2_pilon)
ATGAAGAAACGTTACTTTTATTTGATCATTGTGCTCACCTGTGCTATTTA
CGTCAGTTTGTTTTTACGACGTCTTAAACCGTCGACGGCGATAACGACGT
CGATGTCGAAGGAAGATGTTTCGAGCAACGAGTTGAGGTCCACTGAAACA
ATTGAAAATGATCACAGAACTGTTGAGATGTTTCAAAGGAAACTTAAAGG
TGCAAGCTCGACAACTGAGAGTCACGGAGAGGCGACGAGTGAATCTTTAC
CGTCTAATGAAAAAGATGTTACGCTTTTGACGAGGAAAAAAATGGAGTTG
ATTGATAATATTTTTCAAAAGAAACTGGATAGCGAAGGCTCCACAACTGA
AAGCCAAAGAGAGACTCGTGAATATTTATCAGTTGTTGGGAAAGGCGTTA
CAAATAACGAGAAGGAGAACGTCAAAAGGACTACGACGGATATGTCAATC
CGACAGTGGACAACTGACGACAAAGAAACGTCGACTACCGACCATTTCAC
GTCATCTAAACCCAACGAAAAGAATTCCTCTTTAAAAGACGATCATTCAA
CGGATGATTTTCAATCTACTGAAAGTTCTTCCCAATTTTCTACCGATGAA
TCTTCAGAATCGCCGGACGTAACGGAAGATCTTCCGAGCGGAAGTCCGGA
CACAGACGATCGTGATATTCAATACTGTAATCCGGACAGTATCTACCGCA
AAAATTCTTTTAAATTTTCAAGAAAAGATGTTTCTTGCGTCCCTGTGAAA
GCTTCCGAGAAAAGTTGTAAATGGGCGGAAGAGTTATACCACCCTGATAA
AAAACTGCAAAAATGCGATCCCGCCCAAGTGGTGGAAATTTGTTGGGCGG
AAGGTGGAGGGTACCGATGTTCGATGGAGAGCTGTATGAGTCATGGGAAA
CATTACGTAATGGTTTGGAAAGTGAACGATAAGAATGGGAAGTTAGAGAA
GTTCAGATGGTTTAATGTGGTTAAAGATTTAGAGAAAAGTTTATCGGTAA
TCTCTCGAATGACGCAACGCGAAGGATTTGGGTTTTTACTGCTTCAGTGC
GTTAATATGAAAGAGAAGGAATCAGAAAGTAAAGATTTAGAGCTAGGACA
ACTTTTGATTTTGCAGCCAACCTATCGATCAGGGAAAGCAAGCAAAGAGA
CGGTTAATATAAATTTGCTTTGGGTTGATTCAGTTTCGAGATCACATTTT
TATCGTTCTTTACCCAAAACCATAAACACATTCGAAAACATAAATCGAGA
CAAAAGTACTAAAACGGAAATTCTTGACTTCGAATTATTTCAAGCTGTCG
CTGGCCACACTAACCATATTTTACATGGTCTTTTCACTGGAAATCTTTTT
CCAAAAGATGCGACAAAGAATGAAAAACAGGTGGTAGAGTTCGGTGCGTT
TTTTAAACGTTTTTCTGATGAAGGATATCGAACTCTATATCACGATGACC
TCTGTTACGAACAGGTTTGGGGCTTACGACTCAATCTGGGTACACCAACG
ACATGGAAAGACTTCAAAAGATTATTAAATGCAAATTACATCGATAGTAC
AGATGAAGAAACGTTACTTTTATTTGATCATTGTGCTCACCTGTGCTATT
TACGTCAGTTTGTTTTTACGACGTCTTAAACCGTCGACGGCGATAACGAC
GTCGATGTCGAAGGAAGATGTTTCGAGCAACGAGTTGAGGTCCACTGAAA
CAATTGAAAATGATCACAGAACTGTTGAGATGTTTCAAAGGAAACTTAAA
GGTGCAAGCTCGACAACTGAGAGTCACGGAGAGGCGACGAGTGAATCTTT
ACCGTCTAATGAAAAAGATGTTACGCTTTTGACGAGGAAAAAAATGGAGT
TGATTGATAATATTTTTCAAAAGAAACTGGATAGCGAAGGCTCCACAACT
GAAAGCCAAAGAGAGACTCGTGAATATTTATCAGTTGTTGGGAAAGGCGT
TACAAATAACGAGAAGGAGAACGTCAAAAGGACTACGACGGATATGTCAA
TCCGACAGTGGACAACTGACGACAAAGAAACGTCGACTACCGACCATTTC
ACGTCATCTAAACCCAACGAAAAGAATTCCTCTTTAAAAGACGATCATTC
AACGGATGATTTTCAATCTACTGAAAGTTCTTCCCAATTTTCTACCGATG
AATCTTCAGAATCGCCGGACGTAACGGAAGATCTTCCGAGCGGAAGTCCG
GACACAGACGATCGTGATATTCAATACTGTAATCCGGACAGTATCTACCG
CAAAAATTCTTTTAAATTTTCAAGAAAAGATGTTTCTTGCGTCCCTGTGA
AAGCTTCCGAGAAAAGTTGTAAATGGGCGGAAGAGTTATACCACCCTGAT
AAAAAACTGCAAAAATGCGATCCCGCCCAAGTGGTGGAAATTTGTTGGGC
GGAAGGTGGAGGGTACCGATGTTCGATGGAGAGCTGTATGAGTCATGGGA
AACATTACGTAATGGTTTGGAAAGTGAACGATAAGAATGGGAAGTTAGAG
AAGTTCAGATGGTTTAATGTGGTTAAAGATTTAGAGAAAAGTTTATCGGT
AATCTCTCGAATGACGCAACGCGAAGGATTTGGGTTTTTACTGCTTCAGT
GCGTTAATATGAAAGAGAAGGAATCAGAAAGTAAAGATTTAGAGCTAGGA
CAACTTTTGATTTTGCAGCCAACCTATCGATCAGGGAAAGCAAGCAAAGA
GACGGTTAATATAAATTTGCTTTGGGTTGATTCAGTTTCGAGATCACATT
TTTATCGTTCTTTACCCAAAACCATAAACACATTCGAAAACATAAATCGA
GACAAAAGTACTAAAACGGAAATTCTTGACTTCGAATTATTTCAAGCTGT
CGCTGGCCACACTAACCATATTTTACATGGTCTTTTCACTGGAAATCTTT
TTCCAAAAGATGCGACAAAGAATGAAAAACAGGTGGTAGAGTTCGGTGCG
TTTTTTAAACGTTTTTCTGATGAAGGATATCGAACTCTATATCACGATGA
CCTCTGTTACGAACAGGTTTGGGGCTTACGACTCAATCTGGGTACACCAA
CGACATGGAAAGACTTCAAAAGATTATTAAATGCAAATTACATCGATAGT
ACAGGATTGACGTTTTCCAGTTGTCATCTCCTTCGTCACAATGGTATAGA
CACTCCGTTCAACGGCCCGCAAGACCGATCATTGTGTTTCAACGGTCGGT
TCATGGATGCTTACCATTTGACCTTCAACCATCATCAACATAAATATTCT
GTTGAGCAACAAAATAAGTTGATCACTTTCAACGTCATTTGTGTTGGACA
TGATGATAAAGGAACCAGAATCCAATCCATTGATCAAGATTTATTACATT
ATGTACAAAAGATGAGCGAAGTTAAAAACACTCTTACTCTCGTTTTCGCA
GACCATGGCAATACTTATACTTCGTACGCCATGGGCGTTCAAGGGCGCTT
TGAACAATTCCACCCAAGTTTTTTCATGATTGTTCCCGAGGGCGTTCAAA
AATCACTTGGTGCAAATATCATGAATAATTTAAGAGAAAATCAAGTTAAA
TTAGTCTCCATTATGGATTTACATAAAGCTTTAGTTGCGTTACCTAGACA
ACCACAATCAATAGGTCTATTCGGTGAAATACCCAATGAGAGAACATGTA
ATGATTTACCGCTTGTATTTCCAAATTTTTGCGTTTGTCAGAATTGGTCG
ACCCCTTTGAAGAATGACCAAACGACGGTTCATTTTCTTCATTTCGCGGT
CGGGAAATTAAACGAAGAAATCACCAAATCACAGAATGATATTTCACAGA
ACGGTCTACCGGCCCGATGCAAATTACTCGTTCCGACCAGTTTCGATTTT
ATTACTGAAAGAATTAACGGGAAAACGAAAGTTACTTCTTTCGATTTCGA
AGTTCCCTCAGGAAATTTTGTGACGGAAAAGTATGAAAGGTTTCACGTTG
AAATTGAATCATTAACTCTGGTTGGAGGCAGCAATTCCTTGAAAATGAAA
CTTGTAACTTTTGATCGCATTTCTCCTTACGGACCCTATAGAGCATGCGC
CAACAAGAACGCTAATATCAAACTTTGCATTTGTGATGACGAGAATACTA
TGATAAGAAGTAGTCGCAGAAATCGGATTAAACTTTCAAAACTTGACTTA
CCGAATCGGACAACAATGAAATCCGTTCGGAATCAACCATGCTTACTCGT
ACACAAGATTGTATATCCCGATTCTAAGAAAAACGGATTTCACTCGATTG
CTTATCATATCATCAACAAATGTTCAAACTCCTTTCAAGTGACTTTATTA
TTTGGCAACAAGTTGGTGAATTTACGCACTTCTACGCCTCTCCCGTTTCG
TGGCGCTCTCAGACCGTACAGGGCGGTGTTTATGGGGAATATTGTAAGAT
TGAAGAAAGTTGAAAGAGTAGTCGAACCAAAAGTAAAAGTCAAAGTTCTG
AAATTATAAGATTGACGTTTTCCAGTTGTCATCTCCTTCGTCACAATGGT
ATAGACACTCCGTTCAACGGCCCGCAAGACCGATCATTGTGTTTCAACGG
TCGGTTCATGGATGCTTACCATTTGACCTTCAACCATCATCAACATAAAT
ATTCTGTTGAGCAACAAAATAAGTTGATCACTTTCAACGTCATTTGTGTT
GGACATGATGATAAAGGAACCAGAATCCAATCCATTGATCAAGATTTATT
ACATTATGTACAAAAGATGAGCGAAGTTAAAAACACTCTTACTCTCGTTT
TCGCAGACCATGGCAATACTTATACTTCGTACGCCATGGGCGTTCAAGGG
CGCTTTGAACAATTCCACCCAAGTTTTTTCATGATTGTTCCCGAGGGCGT
TCAAAAATCACTTGGTGCAAATATCATGAATAATTTAAGAGAAAATCAAG
TTAAATTAGTCTCCATTATGGATTTACATAAAGCTTTAGTTGCGTTACCT
AGACAACCACAATCAATAGGTCTATTCGGTGAAATACCCAATGAGAGAAC
ATGTAATGATTTACCGCTTGTATTTCCAAATTTTTGCGTTTGTCAGAATT
GGTCGACCCCTTTGAAGAATGACCAAACGACGGTTCATTTTCTTCATTTC
GCGGTCGGGAAATTAAACGAAGAAATCACCAAATCACAGAATGATATTTC
ACAGAACGGTCTACCGGCCCGATGCAAATTACTCGTTCCGACCAGTTTCG
ATTTTATTACTGAAAGAATTAACGGGAAAACGAAAGTTACTTCTTTCGAT
TTCGAAGTTCCCTCAGGAAATTTTGTGACGGAAAAGTATGAAAGGTTTCA
CGTTGAAATTGAATCATTAACTCTGGTTGGAGGCAGCAATTCCTTGAAAA
TGAAACTTGTAACTTTTGATCGCATTTCTCCTTACGGACCCTATAGAGCA
TGCGCCAACAAGAACGCTAATATCAAACTTTGCATTTGTGATGACGAGAA
TACTATGATAAGAAGTAGTCGCAGAAATCGGATTAAACTTTCAAAACTTG
ACTTACCGAATCGGACAACAATGAAATCCGTTCGGAATCAACCATGCTTA
CTCGTACACAAGATTGTATATCCCGATTCTAAGAAAAACGGATTTCACTC
GATTGCTTATCATATCATCAACAAATGTTCAAACTCCTTTCAAGTGACTT
TATTATTTGGCAACAAGTTGGTGAATTTACGCACTTCTACGCCTCTCCCG
TTTCGTGGCGCTCTCAGACCGTACAGGGCGGTGTTTATGGGGAATATTGT
AAGATTGAAGAAAGTTGAAAGAGTAGTCGAACCAAAAGTAAAAGTCAAAG
TTCTGAAATTATAA

Gene-mRNA-Prot

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
XLOC_041926	XLOC_041926-protein	Clytia hemisphaerica_ch_hm2_pilon	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000053_pilon	genome	sc0000053_pilon:1093381..1097256 -

Properties


Property Name	Value
Aaloc	1555-2907:1354
Aaloc	1-1551:3877

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XLOC_041926 (mRNA) -