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Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000006_pilon:18179..23437+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >XLOC_041709 ID=XLOC_041709|Name=XLOC_041709|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=5259bp|location=Sequence derived from alignment at sc0000006_pilon:18179..23437+ (Clytia hemisphaerica_ch_hm2_pilon)
caGGTAGAAGATGAATACCAAAAGGCAAAGGACATTTTCATTGATATGAC
TTCGGAATTATATGAAGAGCTCCCTGCATTGTATGACAGGTAGGAAGACC
TCATTGCTTCTCATCTATCAATAGAGGTTGAACAATTTGGTTATATCAGG
GTTATATACACCTATCAACCTGTTACAGCGCGGTCAGCTTTCAAGGGGTC
TGGTACTGAGCTTATATGACATTTCTCTGCTTGTGTTTTTCCTGATGAAT
AAATATATTTCATTGCCTGTTCAGCAAAACTCGCTGCTAttttaaataca
aaagaatTGCGCTAGAAGCACTATACCCTTGACTAAACGAGAGTTATCAA
TAATTGCGTTCTTGTTCCACCTGGTAATCCCATCTCCATCAGACATCTTT
GAATTAGTAACCTCATGATTCTGATAGGGTTTTCACACTCAAAAGATGCA
CCGGACCAGAATGTGACGGAACGCGACGTAGCACTTAGGACATCCTATCG
TCTCACTACAAAAATTGGTCCGATAGGTTTTCTATCGTCTCGAAAatcag
accatgttcacactAACCACTTTCTATCGTCACAAAAAGCTATCCGGTAt
agtgtgaacatggtctaattAACACATTTTTTCATTTACAGTCGAATTGG
GTTCTATGTTTCCTGTTTTCAAAGTATATTCACGTTGGAGGAAGTTTTTC
ATCGCGAGGCTGCTGAAGTATGTATTTGGTTTCCTTATATTcttaaaaac
aacttaaaaaacTCCTAacagttgatttttttctcaaaatcactTAATTT
ATATCGGCATTCTCTTGACACGTCATTATTGTTTTTCATCGCGAGGCTGC
TGACGTATGTATTTGGTTTTTCTATTTATACTTAATCCGGAATATTCAGA
AGTTCTTCCTAACAATCAAAATGTGTTGTAAAAAAGAAGGTTAAACCTGA
AAGATGAACTTAGTATGGAAATACAACTTTTTGTGACTCaatatatattt
tgttttcgGATTTCCCTGCATTTTAACCTTTAGGGGGTTGGGAGAGTCAA
ATCTTAAACTTCAAGGAAATATAacttaaatttgaaaaacaacttaaaaa
acACCTaacagttaatttttttttcaaggtctCTTGATCTCGAGGTATGA
CCTGCTGACTGAAGGTCGATAAATTGACATTCTTTTGACATGACATTATT
TGTACGGTTAGTTAGAGTATAGTTACAGACCCTTTGATTTTAAGTAATTC
CACAATCCAGTCCTATCTAGGTTTGATCTAAATTACTGTTTTATAGCTCA
ATCACAACTTGAACGACTTGATGGACCAACTTATAGCGGACTTCTCGGCT
GGAACGTTTAGCACTCGTAAACCCTTCTCTGCTGGCATGTAAGCGTTCTT
TCTTCATTCAAATAAATTCAACTATTCTTTTCTTTTCGACGATTCAACAG
ATTCTGCACAAATATACTTTCCGATACTTTCAAAAGTAACGaatcttttt
tatattatgaattgAGCTGATATTCTTTTAGAGCAACTCTCTATCTTATA
ATTTacttataaatttaaatttccaTGATCGCATTTAGTGAAAGCAGCTT
GAATGTATCAGAAAAGGAAAAAGACGATACAAAGCTCTCCAGCGGGAGTC
TTGCTCAATTTTACGACGTTGCAGTTCCTGACGCTGAAGAAGTAGAAGAA
CATAACTCTTCCACAGAAACGCCCCACCAACAAGATACACCTCCAACCCA
AGATGAAACAGACGCCCTTCAACCGCCCTCACATTACGATGCACCAAACA
GCGAAGATATAGATTCGACTCCCCCGCCCGCCGTACCATCACAGCCTACG
CGACCTGCACCAACTCCGCCCCTGACGTCTTCACCCGCTCGCCCCAGCCA
ACCAGAACTATTTACGGTGGGGAAGGAGGAAATAGATGGTGTAGTTGAAC
ACGAACATGGAACAAGCAAAGAAGAACAAGTAAGACATTTCTTGTTTTcc
ataattcatgatatgcaccactgcaatgacttcacgaaattatgcaactt
ttctgggttttttttcacccaatacgtcactttttcgaAAAGTGCTTGAC
CCTTTTTCCgccaagaaaaaaatcaagattacatattctttgtctttttt
acGCCATCCtttttttGGGCGACCCTTAATATACGTATCAAAACCAAAAA
TAACGCCGATTGTACTGTAACGCGCTGGCGaaaaaaaGGGTCGATAAGGT
ATTTCTTCTTATCTTTCCTTCCTTACGAACAATATTatgtagcgagttta
tgtatttgcgcttTTGAAGAAGGTACAGTGACCGaagtgatttggaaaaa
cccgcagttctgacccgcaaaatcgaagatggtaaaattgctgatttacc
gtcgtcctcagctggtcagggtctagaaaaattaaaaccgtttccgtcgc
agaaaaacacacatacataaactcagtATTTATCTTGTTTACAGGAACCT
GATGAGGTAGTTCCCTTAGAAAATCCTTCTTCAACATCACAGACACAGGA
AGAAAATTCTCCAGAAGAAAACCCTTCTGCGTCGAATACAGAGGAAGGTT
CACTGCCAGCAGATTCTAATTCAGTTTCTACGAGGGCGGACGTTTTGGCT
TATAGAAATGTTCCTTCGCCTGAAAATCCCTGTAATTTAGTTGTACCCAA
TGCAGTATACAAGGTAAGAATATCTGAGTAAAGAATAAGGCTTGTTCTCG
TCGTTGTTCATCAGTTCGAACCTTTATTATCTAGAAATTGTCGAATAAGG
CTTATTCTCGTATTCTCAACTTCAGCATTGAACTAGAATCTGTGAtcgtc
tgtctgtgtgtgtatgtcccaaaactttggggcagcctggagacttcaaa
aattgtcgaatttggctgaaatttggtacactttttccttgggtgaatat
ctagaggtgtttttttatttttcaaattttgatctttggggcctggggac
gattAAACGATTGGAACCCTGGTTATCGAACGAGGTAATGTTTGACGACA
ATATGGATAAAATGCGAGCAAGAAACGTCTGCTCCGGATTATAGAGTGGA
CGAGTCATATTCATAGAGTGACTAGGAACTAGTCTAAAATTTCTGCATAT
TTTGAACTGAAACTACAGTTGGtcataattttcaaatgtattACTTGTGG
ATATTACTATAACTGCATAATATGAAAATCTTATGAAAGTTACAGTGAAA
TCTTGGCAAAGGTTTACTCAAAACTGGGTTGTGATTGAAAAGTTACAGTT
TaaaaaaaaCCAGTTGAAGAGATTTTGTTATAGTGTTTCAATCGCAATCA
CTCTTGAACTTGATTATTCTTTCTCTGTTGTAGGCGATAGCAACGCATAA
ATACAGTCCGGAAGATGAAGACGAACTCTCCTTCGAAAAAGGGGAGATTA
TTCATGTCATTCCGTACGATGATCCAGAAGAACAGGTGAGAATTGATCTG
TTGTCAGGTTAGGTTATCTTAGCCATTATcttagcgaccgtagtgcagtg
ttagagcatccggctattgtgcgcaaggttgtaggttcaacccccagccg
ggtcataccaaagatttccaaaatggcactattgatgcctctctgcttga
tgttcagcaattgatagaaggatcaagggtaagtggagcaatccagggag
aaagagtggcgctctCCCCTACTTTCGGGTGGATagttatcgaaagagga
gccttcgggtcgcctccgactgcggccGCACACTTACTAGGTTATCTTGC
AGATCTTTCCTATAGCTgtcaaatatctttaaaaagtgGTCCTTCATTAA
CTTGGAATAGGGCCATGAATATATAGGGCCTACTTTATCAAACCTATTTT
CAAGGTAACAAGATAAGGATAAGCCGCTCCAAATTTTgtcgattttcgat
ttcttATAAAGGGGGTCAAtaattgggctgttccatttaaaatccataca
ggggTTGGAGGAACCTTTTCAATGAAAGAAATAATTCTttaaatgtgtgg
ataccccctgaaaaatggcaaaatttgcttAAAAAACATGGAAAATACCT
TTCCTTAACCTTAATCACCCTGGAAATTCCTCTTCGAATTACCCCTTACA
CACTGAGAACACTATCAGAAATAATCCAGCCCGCAACGCTAATAATATTA
TTGGCACTATTCCACTATCAAATGCCGAACCAACATATTTTTAATGATTG
GTTGCATTCTAATGATTGGGATTCATTTTCCTTGTGGTTTTCAATTCCTA
TTTTGTTTAATGAGCCCAAAATTATCACTTTTGGCTCCTTCACAAAATTA
TAACGTTTCCATGAGTCCTTATGACGCCCTCATTCCCACTTTTTGTTGTA
TTACTCCTTGGAATTCGTTTGATATTGCGTTGGCACCAAAAGCTGATTTC
GGAGGCTCCCTTAGAATATTTATTTATCAGAAAAGGAAAACTGAAAACCT
ATTAGAAATAATGCAATTTCATCTATGTTTCACCATCTCATTTCACCATT
TCACCAAAAGAGCAAGAGGAGAATTTTCAACcatttctcaggcaagaaag
aATGAAGCCATACAGTAAGATTAGTGCCGCAATCGTAACGATGGTTTTTA
TCTAATGGTTTATTTGTTTGCGAAGTGGTACACTAAAAACTTAGCgaaaa
atttactttcaatTCAGCGTTTTTGTAAAAGTCATGCAAATCACTTGTTT
TTGGAAAAGCTTTCAAACTTTTGTTCCCTTCCCTAGGTGTTATTCTCGTT
GTTTAGGATATTTCTCCGATACATTGATTTACATGAAAATGCTTTGTCTA
CTCGATGAAAACCAAATTGTGCCATTTCAATTTCTTGCTTCATAATCTAA
ATTGGGATTTTGATTTCATGATtgcaaaaatttattattgaaaattaCCT
TAACATTGTTTCACTTAGTAATGAGAGAGAGTAGCTTAAAACACAAAATC
TCAATCAATTTTCATCAAGGACCCTCAGGATATATCTATCCGCGGAAATG
TGTTTCCTCCTTCCCAAGACTCATCAGTGTGgctcgggtaagcgagcata
gGCTGCTGTTGTCACCAATCAAGACCAGAACTATCGGGTTATGGAACTTA
ATTTTCTTTCGCATTTTAGGATGATGGCTGGCTGATGGGTGTGATGGACT
CTAATGGTTTTGTTGGTGTTTTCCCAGAGAACTTTTCAAAGCGTCTATCA
CCTTCTTGA Coding sequence (CDS) from alignment at sc0000006_pilon:18179..23437+ >XLOC_041709 ID=XLOC_041709|Name=XLOC_041709|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=2118bp|location=Sequence derived from alignment at sc0000006_pilon:18179..23437+ (Clytia hemisphaerica_ch_hm2_pilon)
caGGTAGAAGATGAATACCAAAAGGCAAAGGACATTTTCATTGATATGAC
TTCGGAATTATATGAAGAGCTCCCTGCATTGTATGACAGcaGGTAGAAGA
TGAATACCAAAAGGCAAAGGACATTTTCATTGATATGACTTCGGAATTAT
ATGAAGAGCTCCCTGCATTGTATGACAGTCGAATTGGGTTCTATGTTTCC
TGTTTTCAAAGTATATTCACGTTGGAGGAAGTTTTTCATCGCGAGGCTGC
TGAATCGAATTGGGTTCTATGTTTCCTGTTTTCAAAGTATATTCACGTTG
GAGGAAGTTTTTCATCGCGAGGCTGCTGAACTCAATCACAACTTGAACGA
CTTGATGGACCAACTTATAGCGGACTTCTCGGCTGGAACGTTTAGCACTC
GTAAACCCTTCTCTGCTGGCATCTCAATCACAACTTGAACGACTTGATGG
ACCAACTTATAGCGGACTTCTCGGCTGGAACGTTTAGCACTCGTAAACCC
TTCTCTGCTGGCATTGAAAGCAGCTTGAATGTATCAGAAAAGGAAAAAGA
CGATACAAAGCTCTCCAGCGGGAGTCTTGCTCAATTTTACGACGTTGCAG
TTCCTGACGCTGAAGAAGTAGAAGAACATAACTCTTCCACAGAAACGCCC
CACCAACAAGATACACCTCCAACCCAAGATGAAACAGACGCCCTTCAACC
GCCCTCACATTACGATGCACCAAACAGCGAAGATATAGATTCGACTCCCC
CGCCCGCCGTACCATCACAGCCTACGCGACCTGCACCAACTCCGCCCCTG
ACGTCTTCACCCGCTCGCCCCAGCCAACCAGAACTATTTACGGTGGGGAA
GGAGGAAATAGATGGTGTAGTTGAACACGAACATGGAACAAGCAAAGAAG
AACAATGAAAGCAGCTTGAATGTATCAGAAAAGGAAAAAGACGATACAAA
GCTCTCCAGCGGGAGTCTTGCTCAATTTTACGACGTTGCAGTTCCTGACG
CTGAAGAAGTAGAAGAACATAACTCTTCCACAGAAACGCCCCACCAACAA
GATACACCTCCAACCCAAGATGAAACAGACGCCCTTCAACCGCCCTCACA
TTACGATGCACCAAACAGCGAAGATATAGATTCGACTCCCCCGCCCGCCG
TACCATCACAGCCTACGCGACCTGCACCAACTCCGCCCCTGACGTCTTCA
CCCGCTCGCCCCAGCCAACCAGAACTATTTACGGTGGGGAAGGAGGAAAT
AGATGGTGTAGTTGAACACGAACATGGAACAAGCAAAGAAGAACAAGAAC
CTGATGAGGTAGTTCCCTTAGAAAATCCTTCTTCAACATCACAGACACAG
GAAGAAAATTCTCCAGAAGAAAACCCTTCTGCGTCGAATACAGAGGAAGG
TTCACTGCCAGCAGATTCTAATTCAGTTTCTACGAGGGCGGACGTTTTGG
CTTATAGAAATGTTCCTTCGCCTGAAAATCCCTGTAATTTAGTTGTACCC
AATGCAGTATACAAGGAACCTGATGAGGTAGTTCCCTTAGAAAATCCTTC
TTCAACATCACAGACACAGGAAGAAAATTCTCCAGAAGAAAACCCTTCTG
CGTCGAATACAGAGGAAGGTTCACTGCCAGCAGATTCTAATTCAGTTTCT
ACGAGGGCGGACGTTTTGGCTTATAGAAATGTTCCTTCGCCTGAAAATCC
CTGTAATTTAGTTGTACCCAATGCAGTATACAAGGCGATAGCAACGCATA
AATACAGTCCGGAAGATGAAGACGAACTCTCCTTCGAAAAAGGGGAGATT
ATTCATGTCATTCCGTACGATGATCCAGAAGAACAGGCGATAGCAACGCA
TAAATACAGTCCGGAAGATGAAGACGAACTCTCCTTCGAAAAAGGGGAGA
TTATTCATGTCATTCCGTACGATGATCCAGAAGAACAGGATGATGGCTGG
CTGATGGGTGTGATGGACTCTAATGGTTTTGTTGGTGTTTTCCCAGAGAA
CTTTTCAAAGCGTCTATCACCTTCTTGAGATGATGGCTGGCTGATGGGTG
TGATGGACTCTAATGGTTTTGTTGGTGTTTTCCCAGAGAACTTTTCAAAG
CGTCTATCACCTTCTTGA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000006_pilon | genome | sc0000006_pilon:18179..23437 + |
Properties
| Property Name | Value |
|---|
| Aaloc | 970-1059:5170 |
| Aaloc | 868-969:3384 |
| Aaloc | 649-867:2495 |
| Aaloc | 259-648:1590 |
| Aaloc | 166-255:1297 |
| Aaloc | 91-165:643 |
| Aaloc | 1-87:1 |
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