XLOC_041256 (mRNA) -

Overview
NameXLOC_041256
Unique NameXLOC_041256
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000030_pilon:35790..42183-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_041256 ID=XLOC_041256|Name=XLOC_041256|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=6394bp|location=Sequence derived from alignment at sc0000030_pilon:35790..42183- (Clytia hemisphaerica_ch_hm2_pilon)
GATGAAAAAGAAAATGTTCTGGAATCGTTAAAGTCATCTATTGCTTTGCA
AGATTGTGATTTGTGCCAGACGCATGCAGTTTTGAGCTGTCATGAATGTT
GCTTGGAGCTATGTCATAAATGTGACATAGAAATTCACAAGAACAAACCC
TTGCACAATCGTACTCTGTTTCTAGATGGCTTGGCGACACCTATACCACC
AAATGAAGTGTTAAATGAAAATGATCAAATATATGTTGTTGGTCAGTGTC
ATTTTTAAAAGCTTTTTCAAGCTAAAAAATGTTTTTTTATTATTTTGAAT
TGAAAGGTAGCGTTTAATTTTAGAAACTTGAAAGAAAAATCATGTGTGTC
CATTCCTCTTCTAAACACTTTTTTCATGCATTTTTAGATCGTCTAGTTCC
ATTGAAACATCCTAAATGTGTATGTGGCTCTGTTCAGTTTCACGAATCTA
CAAATCAAAGAAAAGTTGTGGTTATAACGATGAAAGGTAAGCAAAACTTG
ACGCCGTATTTTGTTCAATAGAGATGAGTTATAAATAAAAAGAGAATTAT
AAAAAAGAAAGTATAAATAAGGATAATTAGCACTAGATTATTACATAATT
ACCTTTCTTATAAATCACCTGAGTTCGGTATAAATGGTATTTTTTCTATC
CCCATTGCTATATTATGTAATTATGAATTGCTGTTGACATTTTATAGTCA
GTTCGTTGTTTTAGGGATTTTTGCGAAAGTTTTCTATACTCTACTTAATA
TTTTAGTAATTAGATTTTTCTAACTTATGACTTATCTATTTAGGGAAATT
TGAATTGCTTCAATCTATTTTGAGATGTTGTAAGTGCGAACGTATCACTG
ACCCTTTCACTCTTTCAAATATCCTTTCATCTGGTTTTTGGCCATCCTCA
CCCACGCACTTCGGATGTTTAATAGATGTTGATGTTTTTCTAACTTGGGA
TCAATTTAAAAAACATATGCCTGGTTCCTCATCGACTGCATTTTTGGATT
CTCTAAATGATTTGACACTTTACTTTGGAAGGGTAAATATTTTTCCTTCT
TTGTCAGTGTTCTTTTTAGAATTCAACCTCGCTATTTTACTTTCTGTTAT
TATGAATTGAGATGTAGCATCTAGGTCTATAAAGTCTTCAATCTCCGAAA
GTTTTAAATTGTATTTCCACCAGAATAATTTGCACACATGTTTTTCTTAA
AGAATAAGGATCTGTTAATATTGATACTGTAATTTCCTGGAAAATTAACG
CATTTACTTATTACTTTTATTATGTAGCAAGGAAGAATCGTGCCTTCGTC
ATTTTATCAAGGTTTCAAACAATGGAACTTTATCCGATATGAACTAGACA
TGAAGAAAGGAATGGATTGGATGAAATGCCCATGTTGCTCTATCAAACAA
CATGCCTGCCATATAGACGGAAACGCAAAGTTGTACAGATATCAAAGATC
TGGAATGTAAGTTTTTCTACCATTTTCTTAATAAAGTCTCAACTATTATT
CAGTGGGTCAAAAATGTTGGAGGAAGCTGGGATTTCGAAGGAGAGGCTAA
GGGTTGTATATCCTAGTAGGTATTTTCTTTTAATTTCTGGCATTCAATTT
TAGTATTTCCTTAGATGTCAACTTTTATTCTTCAGGCGACGTAGGAAATC
GTATTACAACGAAGCATTTATCGCCGACGACAAAAAAGTTGAAACCTTTG
TATCTTCTCTGCGACAGGACATGGGAAAAACAATTAAGGTAAATATTTAC
ATTTTTCTCAAAGTTCTAAACTTGTGATGATTTTTCTAGCAAAGAAATAT
ACTCAAGTTAAATCTTCAAAATATAATCATCGAAAATCTTTCTTTTTTTT
TAGTACTTTAGTACTTTACTAAGCCACTAAAGGTTGATTCCTGATGATTA
TCAAAAACTAAGCAACTTGGTAACCGACCCTGATTCCTGAACATTTCAAT
GTCGATTTCAATTAATAACGCGACATTATGGAGCAGAACAAAATCTACAG
AAATAGCACTAAAAACTGATTCTTTTTCTGATTTTTTTTTAAGACTTCAT
CTGATACATCTTGTGGGGGTGAATGGTCAGCTGCAAGGAATACAGAACGG
AAGAGAAAATCAGTGGACGATACTGGTCTTTACGTTGCTAGCTGTCGTCA
TCAGTACGGATTGAAATCCATTAACATGAAACGAGGAGAAATTTACGCCT
ATCCAGCATATTTGTTGACAAACTTCATTTTGCCAAACAAAGTGGAATAT
TTATTTACCGATGTTATGTGCAAACTGTGGCCCTACCTTTGTAAAGTTGA
TTCAAATTTGCCATCTAAAATTAAAGGAGCTTTGAGTGTGATGCATGCCA
AAGGTCACAACCTTAGATGTCAGGTACGGTTATAATTGCACTATTCCATG
TTTTTCTATGGGAAAGAAAGCTCGTCTCTTAGTTTTCTATCAGAAGCTCC
GTATAAACTGATGCAGTCACTTTTTCATATCAGCATAAACAAAGTCGGAT
TTAAGTTGAGTGTTTTTTTACTTTTTAGGTTAGTTGGGATGGGGAATGGA
TTCAAGGTAGTGGCAAGTCGACCGGAGAAGAATGTGAACAACTGTTTTCT
TTCCTTTCACGCTGTGCTAACACAACTAAATATCAGTCACCTGAAAGTAA
GATTCAATTGTATTAGTTTGTCCTAAATCAAGATGTCCACTTTGTCAGGA
AGTTGGCAGAAATTTTCAGCAGATTTAAAAAAAGGGCAAAAAGTCAGGAA
ATATTGAGATTTACGGGGGCATATAGGAACGGTAACAAGTAGGCGACATG
TCAGGAAAGTCAGCTAAAAAATGTCAGGAAAGTTTTAGCAATGTAATGAA
AAACAGGGTTAAAATTCGAATCTTTGGATAATAATCATTATTATTGAAAG
TATTTTTTAAAAGCATAAGTAAAAAAAATTGCTTTGTTTGGTTCGTCCTT
GGCAGGGGTATTAACTTAAAACATAATCTATGGAAAACTTTCTTTTTTAG
ATCGAGAGGAAACTCTTACTGAAATGATATTATTCTGGAATAGAAGAAAA
ACATTGGTTCTTGCTGAGAGTTTGCTGAAAAAATTTAAACGGGTATAAAA
AGTTTACTAGTCAAAAGTTTTCCAATTTGTAAAACAAAGTCTTTGAGTCA
TTTGACTAAAGATGCTAAAATAATTAAAAAATATAGTATTTTCATGACAA
ACACCAAATACCAGCGTTAGTATAAAATTCATTTTATGAGGTATACCGGG
AGGGTACATTGCTATACATTTTATGAGCTATATAAATTCCTAACCTCATT
TAATTTTCTTTTGTAGATAACTAAGGAGGTGTCTATATTCGAAGATAAAT
TGGGCAAGAAATGTGTCGAAATGGGTATTACCATCAAAGATGTAGATTTC
GTGTCCCTTCTCAACAAACTCAAGATTTATGCTAGTGGAGGTAAGCAACT
TTACCATAATGGGCTCTTCCGGAAAAAGATTGAATATGGAGGGGTGAATG
ATATAACATTTTTTGGAAATTTAACCCGACTTTTGACCCCCGGACAGCAG
GTATAACCCCCCCCCCCCGAACAAGCATCAGTTGATCCCCCGGACTTTCA
AAATTACCCCCAATCAGAGCAAGTTTACCCCCGGACAAGGCAAATGTTGT
GGATTTTTCACTACCCTAGACAATATATCATCCACCCTCATGAACGAACA
TTTTCTGGAAGAGCCCAATATATACAAATACAAAGGCACTTTATCTACAG
TATGGTTTTGATAAATTTTTTTTTAGGAAAAGATAGGTAACAGTTGGTTT
GTCCCAGTTGTGATTTATTAAAATTGTTTCCTATGAGAAATTGCTTGTGA
CGTAGTCTTCTATTATATTCATTTTTTTGAATTATCTTTTAGGCTCTCTA
TCACCTTGTAAACCAACATCTCATCAGCAAATGATTCTTTTATATCACGA
TCTTAATAAAACTCCCTCTGATGCATCTGAAATGTCCAAAGATCTCCTCC
AGAAAATAGTACTTCCAGACTTAAATGACGTTCATATACCACTTTTGGCG
AAGAACAAAGCGGAAAAAGAGTTACTATTAAATAACGTTTGGGATAATGA
CATCTCAGCTACCAAAATCCAAGGAGAACTTGACCTCCTGAGAAGTGCTG
TCCTTGTGCCTGCTTTTCAAAATGCAATTCAAAGTTGCCGGTTTGAAATG
TTACATTGGAATATACGATTAAAGAAATATGCAGGTTCGTAAACTATGTA
CTTGTTTTCATATTAGTTGTTTTGAGTTTTTTTCATTTTATGAATTCTAT
ACAGGGTATGCACCCAAGAATGCAGGTGCACCCCAGAATTATGGCCCTCC
GAATTCCTTGTATGTTTTTTTATTTAAATTAGTTTGAAACAATCCTTCAT
GGATACATAGTATGATAACTTTACCACCAACTAAGCCATTTCTTTCAACT
TTTTGACTCAAAGTTCGACTTTTGTGAGCTTTCTTGCAAAGTTTTGTTCT
AAAAAACATGTCATTTGAAATTGTCAAACAATTTTGTTATTGGACTTTTT
CTATTTAATATATTTAAATGGAATATGAAAATAATCATTACTTTTCTTAC
TTCCAACTTAGTGTAGAAATTTTTTAGTTACATTGCACTGCGTTTGACCT
CTGCATTCTAGAGCGCAAAAAATCAAATTTACCCATTTAAACTAGATATT
TCCAGACCAGAATTTGCATTCTTGTTTTGCACCATGAAATAAGATCCTTA
GACGAATTCATAATTTTGTGTGCTTCAGTATAAAAGATTACATCATGAAT
ATCATGAATGGGCAGGAAAACATTTTATCAGCCCAGACTTTTACCAAAAC
GACCCCAATTTTTATTTGAATGTCTATTGCTGTCTTCACAACAAAAACAA
AATTTACCAGCATTCTGGGATGCAAACCCTGTATGTACCTCACAAATTAA
AACGTTTCTTTCTTTAAAGTGAAATTTTTTTATATTGTAAAAGGGTAACG
AAGAAGAAGGTTCGAATTATAGCAAATATTTTTTTTCAGATTCTGCAAAG
CTCAGATGTGCTTGTCGATTGAAGTTTAGCGAAGTAAACAAAAAGCTAAA
CTCCCTACTCGAACGTTTCATTACAGTCAAATCTTTGGAAGACGTTAGCG
AGTTTGAATTGATCAAAGGTAAGAAAATCTTATTTGTGTATATTTGTGTT
ACCTTTAAGGGGAAAAATTTTCGCGGAATTTATTTATGCGAATGAAGGGA
ATTGCGATTCCAAAATAGGCCAGTTTTGCCTTAAAGGGACCAAATGTAGG
GTCGATTTTTAAATACTGAGAAAAATAATGTCGCAAAATGAAATTCCAGG
CAATTTTCCTTTGCGAAAATCTCTCCACGAAATTTTTTATTTCTTATCGT
ATTGGCCTGAGACATTATCGAATACACCCTTCTCGAGATGCATAAATTTA
TTGTTGTCCTCGTTTTCAAACAGATTTCATTGTTATGAAATCATACATTT
AGACCAATTTAAATTCCCAAAAGGCAAACATTAACTCTAAAACAGAAGTA
CTTGAAATTCAAAATGTCTCATGAGGTGTAAACAACACAATTGTTGTTGT
GAAACTGTAATTTTATAGCAATGAAATCTGTTTGAAAACGAGGACAACAA
TAAATTTATGCATCTCGAGAAGAGTGTATTGCAACCGTTTTTTTTTTAAA
GAACGTATACGTTTGAAAACGAGATTATCAAAACATCTTACTTGCTATGC
GTGTGAAATGGCCATTTTCCGCGCGGGATGAATTCGTAGCTCGAGGATGT
TTGCTCAATTACATGACAAGGCATGTGATTTTGAAATTTGGGGTGTTTTT
TAGCCATTGTACATCCATTAAAAAACTTTGAACAAAATATTTAACCCCAG
AAATGGCCATTTTACAGGCGTTGAATTTTTCGGGTGTGTTCATTAGCCAT
TTCACACGCATGGCATTTTTTGGGGTTGGAAAATAGCTCTTTTATATGCA
CGGATTTTAAACATTTCATTCTTCTGAAAAAGTAAAACTCACCCCGAAAA
TGACAATGGATTGTCTTTTGCTTATCATTTGATGAAGAATTGGCAGTATA
TCTTCTGAAAGGCTGAAGCAAATATGAATGATAGCCCGGAATTCAAGTTC
GTCTTTTCTCTACCTAATGGTTGTTCAGAAATATTTAGACTTGAATCGTT
TACACTCTTTATTGAGGTTGAATTGAATATTCGGCAATCAAAGTTTTATC
TTTTTGTTTAGTATTCGCAGATTTTATGATTTAAGAAACTAATTTTTAAT
GCTTTTGACTTTTGCTTTTACAGAATCCAACCACCGTTGTTGCTCGAGTT
TAACGCTAAAAAAGATAGATGTCTTGAAGAGCTTGAATTATTGA

Coding sequence (CDS) from alignment at sc0000030_pilon:35790..42183-

>XLOC_041256 ID=XLOC_041256|Name=XLOC_041256|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=4134bp|location=Sequence derived from alignment at sc0000030_pilon:35790..42183- (Clytia hemisphaerica_ch_hm2_pilon)
GATGAAAAAGAAAATGTTCTGGAATCGTTAAAGTCATCTATTGCTTTGCA
AGATTGTGATTTGTGCCAGACGCATGCAGTTTTGAGCTGTCATGAATGTT
GCTTGGAGCTATGTCATAAATGTGACATAGAAATTCACAAGAACAAACCC
TTGCACAATCGTACTCTGTTTCTAGATGGCTTGGCGACACCTATACCACC
AAATGAAGTGTTAAATGAAAATGATCAAATATATGTTGTTGGATGAAAAA
GAAAATGTTCTGGAATCGTTAAAGTCATCTATTGCTTTGCAAGATTGTGA
TTTGTGCCAGACGCATGCAGTTTTGAGCTGTCATGAATGTTGCTTGGAGC
TATGTCATAAATGTGACATAGAAATTCACAAGAACAAACCCTTGCACAAT
CGTACTCTGTTTCTAGATGGCTTGGCGACACCTATACCACCAAATGAAGT
GTTAAATGAAAATGATCAAATATATGTTGTTGATCGTCTAGTTCCATTGA
AACATCCTAAATGTGTATGTGGCTCTGTTCAGTTTCACGAATCTACAAAT
CAAAGAAAAGTTGTGGTTATAACGATGAAAGATCGTCTAGTTCCATTGAA
ACATCCTAAATGTGTATGTGGCTCTGTTCAGTTTCACGAATCTACAAATC
AAAGAAAAGTTGTGGTTATAACGATGAAAGGGAAATTTGAATTGCTTCAA
TCTATTTTGAGATGTTGTAAGTGCGAACGTATCACTGACCCTTTCACTCT
TTCAAATATCCTTTCATCTGGTTTTTGGCCATCCTCACCCACGCACTTCG
GATGTTTAATAGATGTTGATGTTTTTCTAACTTGGGATCAATTTAAAAAA
CATATGCCTGGTTCCTCATCGACTGCATTTTTGGATTCTCTAAATGATTT
GACACTTTACTTTGGAAGGGGAAATTTGAATTGCTTCAATCTATTTTGAG
ATGTTGTAAGTGCGAACGTATCACTGACCCTTTCACTCTTTCAAATATCC
TTTCATCTGGTTTTTGGCCATCCTCACCCACGCACTTCGGATGTTTAATA
GATGTTGATGTTTTTCTAACTTGGGATCAATTTAAAAAACATATGCCTGG
TTCCTCATCGACTGCATTTTTGGATTCTCTAAATGATTTGACACTTTACT
TTGGAAGGCAAGGAAGAATCGTGCCTTCGTCATTTTATCAAGGTTTCAAA
CAATGGAACTTTATCCGATATGAACTAGACATGAAGAAAGGAATGGATTG
GATGAAATGCCCATGTTGCTCTATCAAACAACATGCCTGCCATATAGACG
GAAACGCAAAGTTGTACAGATATCAAAGATCTGGAATCAAGGAAGAATCG
TGCCTTCGTCATTTTATCAAGGTTTCAAACAATGGAACTTTATCCGATAT
GAACTAGACATGAAGAAAGGAATGGATTGGATGAAATGCCCATGTTGCTC
TATCAAACAACATGCCTGCCATATAGACGGAAACGCAAAGTTGTACAGAT
ATCAAAGATCTGGAATGCGACGTAGGAAATCGTATTACAACGAAGCATTT
ATCGCCGACGACAAAAAAGTTGAAACCTTTGTATCTTCTCTGCGACAGGA
CATGGGAAAAACAATTAAGGCGACGTAGGAAATCGTATTACAACGAAGCA
TTTATCGCCGACGACAAAAAAGTTGAAACCTTTGTATCTTCTCTGCGACA
GGACATGGGAAAAACAATTAAGACTTCATCTGATACATCTTGTGGGGGTG
AATGGTCAGCTGCAAGGAATACAGAACGGAAGAGAAAATCAGTGGACGAT
ACTGGTCTTTACGTTGCTAGCTGTCGTCATCAGTACGGATTGAAATCCAT
TAACATGAAACGAGGAGAAATTTACGCCTATCCAGCATATTTGTTGACAA
ACTTCATTTTGCCAAACAAAGTGGAATATTTATTTACCGATGTTATGTGC
AAACTGTGGCCCTACCTTTGTAAAGTTGATTCAAATTTGCCATCTAAAAT
TAAAGGAGCTTTGAGTGTGATGCATGCCAAAGGTCACAACCTTAGATGTC
AGACTTCATCTGATACATCTTGTGGGGGTGAATGGTCAGCTGCAAGGAAT
ACAGAACGGAAGAGAAAATCAGTGGACGATACTGGTCTTTACGTTGCTAG
CTGTCGTCATCAGTACGGATTGAAATCCATTAACATGAAACGAGGAGAAA
TTTACGCCTATCCAGCATATTTGTTGACAAACTTCATTTTGCCAAACAAA
GTGGAATATTTATTTACCGATGTTATGTGCAAACTGTGGCCCTACCTTTG
TAAAGTTGATTCAAATTTGCCATCTAAAATTAAAGGAGCTTTGAGTGTGA
TGCATGCCAAAGGTCACAACCTTAGATGTCAGGTTAGTTGGGATGGGGAA
TGGATTCAAGGTAGTGGCAAGTCGACCGGAGAAGAATGTGAACAACTGTT
TTCTTTCCTTTCACGCTGTGCTAACACAACTAAATATCAGTCACCTGAAA
GTTAGTTGGGATGGGGAATGGATTCAAGGTAGTGGCAAGTCGACCGGAGA
AGAATGTGAACAACTGTTTTCTTTCCTTTCACGCTGTGCTAACACAACTA
AATATCAGTCACCTGAAAATCGAGAGGAAACTCTTACTGAAATGATATTA
TTCTGGAATAGAAGAAAAACATTGGTTCTTGCTGAGAGTTTGCTGAAAAA
ATTTAAACGGATCGAGAGGAAACTCTTACTGAAATGATATTATTCTGGAA
TAGAAGAAAAACATTGGTTCTTGCTGAGAGTTTGCTGAAAAAATTTAAAC
GGATAACTAAGGAGGTGTCTATATTCGAAGATAAATTGGGCAAGAAATGT
GTCGAAATGGGTATTACCATCAAAGATGTAGATTTCGTGTCCCTTCTCAA
CAAACTCAAGATTTATGCTAGTGGAGATAACTAAGGAGGTGTCTATATTC
GAAGATAAATTGGGCAAGAAATGTGTCGAAATGGGTATTACCATCAAAGA
TGTAGATTTCGTGTCCCTTCTCAACAAACTCAAGATTTATGCTAGTGGAG
GCTCTCTATCACCTTGTAAACCAACATCTCATCAGCAAATGATTCTTTTA
TATCACGATCTTAATAAAACTCCCTCTGATGCATCTGAAATGTCCAAAGA
TCTCCTCCAGAAAATAGTACTTCCAGACTTAAATGACGTTCATATACCAC
TTTTGGCGAAGAACAAAGCGGAAAAAGAGTTACTATTAAATAACGTTTGG
GATAATGACATCTCAGCTACCAAAATCCAAGGAGAACTTGACCTCCTGAG
AAGTGCTGTCCTTGTGCCTGCTTTTCAAAATGCAATTCAAAGTTGCCGGT
TTGAAATGTTACATTGGAATATACGATTAAAGAAATATGCAGGCTCTCTA
TCACCTTGTAAACCAACATCTCATCAGCAAATGATTCTTTTATATCACGA
TCTTAATAAAACTCCCTCTGATGCATCTGAAATGTCCAAAGATCTCCTCC
AGAAAATAGTACTTCCAGACTTAAATGACGTTCATATACCACTTTTGGCG
AAGAACAAAGCGGAAAAAGAGTTACTATTAAATAACGTTTGGGATAATGA
CATCTCAGCTACCAAAATCCAAGGAGAACTTGACCTCCTGAGAAGTGCTG
TCCTTGTGCCTGCTTTTCAAAATGCAATTCAAAGTTGCCGGTTTGAAATG
TTACATTGGAATATACGATTAAAGAAATATGCAGATTCTGCAAAGCTCAG
ATGTGCTTGTCGATTGAAGTTTAGCGAAGTAAACAAAAAGCTAAACTCCC
TACTCGAACGTTTCATTACAGTCAAATCTTTGGAAGACGTTAGCGAGTTT
GAATTGATCAAAGATTCTGCAAAGCTCAGATGTGCTTGTCGATTGAAGTT
TAGCGAAGTAAACAAAAAGCTAAACTCCCTACTCGAACGTTTCATTACAG
TCAAATCTTTGGAAGACGTTAGCGAGTTTGAATTGATCAAAGAATCCAAC
CACCGTTGTTGCTCGAGTTTAACGCTAAAAAAGATAGATGTCTTGAAGAG
CTTGAATTATTGAAATCCAACCACCGTTGTTGCTCGAGTTTAACGCTAAA
AAAGATAGATGTCTTGAAGAGCTTGAATTATTGA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
XLOC_041256XLOC_041256-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000030_pilongenomesc0000030_pilon:35790..42183 -
Properties
Property NameValue
Aaloc1999-2067:70
Aaloc1870-1995:1354
Aaloc1528-1866:2501
Aaloc1402-1524:3079
Aaloc1312-1401:3393
Aaloc1192-1308:3867
Aaloc862-1191:4352
Aaloc760-861:4759
Aaloc580-756:5118
Aaloc343-579:5600
Aaloc244-339:6006
Aaloc1-240:6395