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Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000279_pilon:164479..171063+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >XLOC_041146 ID=XLOC_041146|Name=XLOC_041146|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=6585bp|location=Sequence derived from alignment at sc0000279_pilon:164479..171063+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGGCAAACTCGCTGTACTTGGAGCATTATCTGGAAAGTAAgtcatttga
tttttcatccATAAATTTGTCGACATGGGTTTTGCAGAAAAATGGGACTG
ACAtttatttactacctctactttttagttttacaacttttatagtctat
ttagttttGGTTGGCACActatatcatccaccaggatgcaagtgtATGAT
CCCATAGGGATCTTTGTAGGGGCactggtagggttgggagctttcttaat
taaggtctgtaaattacacgctataaatATGTGAATGACACGTGTCTCGA
CTCTGACGCAAGCGGTTTTAGACaatgggtttgtaaaccaaaaGGTTgtt
tgcatttggtggttcaaGCTTGGGTCAAGTCAGTGTCAGTCTCTTTTGCA
ATGCTGGAAaagctaacctgataacagcttttcataattttcttacgtgc
acgttaaacctctgaaggcacttgaaaattattacaacaagaatcttgtt
gtgcgccagacagttagtcacactagccagttagtcacactaggaaatgt
agctttcagaaaaaacaacatcagtcatctacaggatgtatttgcaacaa
caaggatgagagttacctgaatcaagatcacaagacaatcaattaaaact
tgaaagtttgaaacaacaTAAAAcatgcagcagccaaaatcaaccaacca
aaatttgtcattcaattcccgagacagcgcttcgatttttaaggccttgt
ttatacgctaaagtaaaaataattccgcatatgtaaatgggtcattgctt
ggggtccggcaaaatttctgggaaatagcctatccggcggtgcgcggatc
taggtgggttccgcctcccccgtagatctttttcttgtgaagttgatctt
caaattagttttcaaggttggcttggctcaaattttttcatctatggctc
aaattttaggcaatttctcaaagtttttgaaaatggtaatttcattaaaa
agcgccgggttattttttcatgaatccctttagaagttttgcggcgcatt
tttttacttgagagtcaagtaaacgatatagcgcttttgcagcattaatc
tttgatacgcattttggcaggacgctagtgtgactaactgctagCGTCCC
GCTAAAATGCATATTGAAGATTAATGATGCGAAAGcactatatcgtttac
ttgactcgcaagcaaaaaaatgcgccgcaaaacttctgaaaggatttatg
aaaaaataacctggcgctttttaataaaattaacattttcaaaaactatg
agaaattgcctaaaatttggagtaatttacgatgcgcgatccaatgattc
acgatgcacgatgcacgatccattaTGTCGATTgaatgttaattattcta
attatgcacgaataagttttcataatgctagctacaaacatcatataaca
ataacgaagaaaaaaaattaaaaaagaaagggaaataatttatcataatc
agaatgattaaaataacttatatcttctgtgtagaaaagccaaaaattta
tagcgaaaaaaacaaaatgtttgcCGCATACCTCACtcctttttaaaatg
aaagaaaaagccttaacgtcatataaaagttttggcgcaaaaaatttatt
aaacaCAAACTCCTTTTtgtacgtttattatttttttaagaacagtgaat
acacgttttttttttataaggaaccttaactttgctctgagcctggagtt
ccttatttttacagagaatttcagcctcaaagttccttatccagttcctt
atttacatagctggtaagtttggataaccatctcttactgttccttaaaa
cttgtttttttattctcagcctgagcagttcctaaacaattccttatttt
ttggaccattttcagcctcgagttccttataaacgtgttccttatataaa
aaaaatgtgtaaggTAAATAAGGAATCATTGGCTACATTACTTTCGGTAT
GTTTATAAAAGCCTTTCACCAACTGAATTGCAACtggtgtttttatttat
ttgatatttttctttgtttgatgatcaagtcaattcatttgatctttctc
aaaaaaaggtgagtttataTACGTgctcttcattaaaaaacgtcttccct
actttaccaacattgtaaattttttttataaccctgtctcaatccaatgc
atttggttggtttaatcggagaaacctttttttttttaagaaagaaagca
aaaaggttacaagatattctattcaaagcatgggcaaaaaagtttatgtt
ttgatttgatttgattgtcgagGTTAAAATATAATACACGCATACTTTAC
ATTGACTTtccaggaatacaaaagaagaaattaaaataatatGTGAActg
taaatgcataattagaataattaacataatatatgcatggatcgtgcatc
gcgcatcgtgaatcgttggatcacGCATTGTAAATTAAACAAACcgaaat
ttgagccatagatgaaaagattTAAGCCAAgacaaccttgaaaactaatt
tgaagatcaacttcccaagaaaaagatctacgggggagacggaacccacc
tagatccgcgcaccgccagATAGGCTActtcccagaaattttgccggacc
tcaaacactgacccatttacatgtgcggaatgtttttttcctttagcgta
taaacaaggccttaaaactCGAAGCCCTGTATAAGGAATTGAATGGCAAA
TTCcatgagaggtcctaaatccgtcacccctgcctaattccgacccccca
aataaccgttatgaaaaaaaattctatgtttacaaacattccctctccaa
gttgaacgataaactattgctagaactctcgaaacaaaacatctaacaag
atagctgtaatgtcaagatgtcaattaatttaattaaaaagtgtAAATAT
AATTACCTTTtgttctggatcagttgctcatgtttaaaacgataacagct
TTGTAATAAttgtgacttgtgcgggaaaataCGAAACAgcttggactggt
ttccatcaagaaacaaacagccctctttaccacccataagtccggatgtt
tatttacggaaggcctgCAATCAAGCcgagtgccagtgtaaagtaataaa
aaccaggcttgacgtttcaaaatgagcacgctcgtacacagacctcatat
tcgtcagattgtatgttttcacccatccctttatagcttcagcgtggtgg
gcagaaacaaccacaatctgatctcaggttaggaaAAACTGAATTCATCA
GCTTTGAAAAAGCTGAATTCATCAGCTTTTCTTGAAATGTTTTCCCTTTA
ACTTCCCTGAATGATTTGACAGAATTCCAATGGAAATCAAgactataaag
tgcactcacAAAACATTAATTTGTCAGATGTAAAAAGTCAATAACGGTAC
TGTCATCAAATGACAATcgaacaaaggattttctgtcaagaacgTTAtat
aaacattccaacaactttcaTGGAAATGATCTGCCCCAGCTCGGTTCTAC
CAGGGTGAAATGTCTGATATTCTTGCAGAGATATGATAGCAATATAGAGA
TATTAGACATGGAGAGTACTAGAAGTTCATTCAGCTATGATAGTCTCTTT
AATGTACGAACGTTATTAAATTAATGATTTTAAGGGATTAGAAcatctta
aagggacattaaagtagtaaaatgtaaacattgcgcgaaccacatatcat
taaagagaacaattaaaatcacttgtccgaaacaaacttgtaaagcaatt
gaataatcaaaattagccatatttggtttgatttttgattttgacatgtg
acatttgttttgattttgtatccgctgcatacagtttgtttacaaatttc
gcaagtactgttatgtccctttaaaagttttattgcttttttcctattta
taatttcataatttgaataattttaaaaccCAGCAGACtcaagcatcaaa
ataatgacagtaaaaaattttaaaaggtttctttttgaaaaaaaattagt
attcATATTTTGTATCCATCCTCATATGGATAGgctggacgaacatttcc
agggggtaatccttctaaaaaaaaaagtaattagaaaaatttctaaaggt
ttttttttttcgtttttccagggggtaaaagttgtattctaaaatttaaa
aaggcatgaaaagaatttttcatgaTAGGGTTTTGtttgcaaatttttcc
attttcaagaGTGTATCCATAAATGTTCAAGAATTGTTTTTGACTCGAGA
AGGTTCGTCCACCTCCCTGTATGGATATTTTATGGAACAGAGgtattgac
aaatttttttcactaTAATAACCCccttgaaaaatctgaaaaatgaacaa
gaaccccttggaaaatcaaggctcagaccccctggaaaagtttgtcaata
tccctgtatggtttaaaaatggaatagcccattgttGCTAATAAAAACTA
AtctttttatttatataaagctaaaacaaaCCTTTTCGACACACTTatta
aaaatttcagaattcttatgtttaaaaacttttgatCAATTGAATGACAT
GGCCCATTAAAGAAAgataagaataaagaaatataataTCAAGAACAATT
GATTCAAaggttgtttttgtttttcaaaaatgtgtACTTAATTGCATGTT
TTCAGCAATGAAATCAATTACAGTTCATAGCGTCAACCCTCCCTGCTGGT
tggggggttacaccctaaatGTTTCCCGaaaaaggagggggctggaagta
caccactttttttttggggggggacCTATGTTCTTGGGGGGAgttaaaat
ctcatcacttaatgCAGAAGCTAAATAGTTGGCTTCgattactcaaattg
aagctcatgattctgaaatatttttataaaaagtgtgcaaaatattttgt
cttgaacttaaaagtgtctagggtcaaaagtcctgggggctaacaaaaaa
ttcataaatcttggAGGGGAATTAAAACTCAGCGGTGACCTAATTTTTGC
cagggacctaaacccaggctgacgctatgcaGTTTCCCGAATCTTACAAT
GTTTTAAGTTGTTTTCTTTCCATTTCAGGTATTGAAAGTTTACCTTACGA
TCTGCAAAGAAATTTCTCTCTTCAAAGAGATTTGGATCAAAGAGCACATG
GTATGTTTGTGTTATTACATTATTGttccctttttcatttttatcactCA
ATTTAAATAATGAATGAAAAAGAGGTCTTTGgttaaaatgtttgttttaa
aATCAAGGCTCTGTACTCTGAAGTACATATTTTAAATGCTTAGCTTttcc
atttttggacctacctcggaggtcctataaattaacccatgtccgttcgt
ccatctgtccgtccgtctgttaccagcttttctcaggattggctgattag
ttttctctgatttttggcacaatgatgcaaaatggcaatgcccaaaatgt
gacggagcccgattttcgaaaaagaaatttccggaaaaactggttttttg
gcattttctcaagattttatcattggttttttctgattttttgctcaaag
atgcgtattaacaatgcccaaaacatggccaagtccgatttttgagaaat
attttttatgccggacatcgccgtttttctggattttcattggacttttt
ccttataattgattattttttcattcaaaaacattattaatagcaatgcc
caccatcaagcatgtttcaattttcaataaaattgatttttgaagctgga
actatttaaaaattgccggaacaaaCTATTTTCGCCgaaaagacagtatt
tcttgaatttctcgagctgtactttatatttttattttctggccGAAGAT
GCCGGAatataagttggagatttgatatacattcaaatatagcgcttttg
attctctgaaacaaccaaaaaaaacttccataattatatttgactatcaa
aagttacaggcattcttgtttccactgccaattatatttggacagacttt
aataagAAATGTATGTTTTGTATTATTTAGATCTCCTTGATGATATTGAC
AAGCTTTGTGAAGAATACATTTCAAAAGTGAGGGATCTGTTGCCAGCTGA
AAGAAAAGAATACTTCACAAAGATTGAAAATGCCTTTCAAAAGAGTCGAG
AATACGGTGATGACAAGGTTCAACTTGCTGTTCAAACTTATGAGATGGTA
AATAGAACTTTGATTGTTGGTGTACCAAAACTAACGAAATGGAGCATTTG
CTTGATGATGTTTTATGTTATAGATATTTAAAGTATCTTGATGAAATTAC
AATCTTCTGATCTAAGGCcaaatgttaaaatttcaaattagaaatGATAT
GTGATAAAAAGTCTATTTCTACAACCCTCCATTTTAAAACGTTTCATTAC
CTACAGGTAGACAAACACATCCGAAGACTTGACTCAGACTTGTCAAGATT
CGAAGAAGAATTAAAACAACAACgacaacagcaacaacagcaGGGAAATG
CTGAAGAAGGTACTGTCATTGTTTTACTGCAAAAG Coding sequence (CDS) from alignment at sc0000279_pilon:164479..171063+ >XLOC_041146 ID=XLOC_041146|Name=XLOC_041146|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=810bp|location=Sequence derived from alignment at sc0000279_pilon:164479..171063+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGGCAAACTCGCTGTACTTGGAGCATTATCTGGAAAATGGCAAACTCGC
TGTACTTGGAGCATTATCTGGAAAGTATTGAAAGTTTACCTTACGATCTG
CAAAGAAATTTCTCTCTTCAAAGAGATTTGGATCAAAGAGCACATGGTAT
TGAAAGTTTACCTTACGATCTGCAAAGAAATTTCTCTCTTCAAAGAGATT
TGGATCAAAGAGCACATGATCTCCTTGATGATATTGACAAGCTTTGTGAA
GAATACATTTCAAAAGTGAGGGATCTGTTGCCAGCTGAAAGAAAAGAATA
CTTCACAAAGATTGAAAATGCCTTTCAAAAGAGTCGAGAATACGGTGATG
ACAAGGTTCAACTTGCTGTTCAAACTTATGAGATGATCTCCTTGATGATA
TTGACAAGCTTTGTGAAGAATACATTTCAAAAGTGAGGGATCTGTTGCCA
GCTGAAAGAAAAGAATACTTCACAAAGATTGAAAATGCCTTTCAAAAGAG
TCGAGAATACGGTGATGACAAGGTTCAACTTGCTGTTCAAACTTATGAGA
TGGTAGACAAACACATCCGAAGACTTGACTCAGACTTGTCAAGATTCGAA
GAAGAATTAAAACAACAACgacaacagcaacaacagcaGGGAAATGCTGA
AGAAGGTACTGTCATTGTTTTACTGCAAAAGGTAGACAAACACATCCGAA
GACTTGACTCAGACTTGTCAAGATTCGAAGAAGAATTAAAACAACAACga
caacagcaacaacagcaGGGAAATGCTGAAGAAGGTACTGTCATTGTTTT
ACTGCAAAAG
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000279_pilon | genome | sc0000279_pilon:164479..171063 + |
Properties
| Property Name | Value |
|---|
| Aaloc | 277-405:6457 |
| Aaloc | 112-276:6083 |
| Aaloc | 40-108:5131 |
| Aaloc | 1-36:1 |
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