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Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000214_pilon:487987..492602+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >XLOC_041051 ID=XLOC_041051|Name=XLOC_041051|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=4616bp|location=Sequence derived from alignment at sc0000214_pilon:487987..492602+ (Clytia hemisphaerica_ch_hm2_pilon)
CGCCAAACACGAAAAAGCGAACGAAACTCAGAGACTGGGACCGACAGAAT
GGCTATTGGTCACCATATACGTATGTTATACTTCGATACATTTCATATGT
CAAATTAAAAATACACATGTGGATTGACATGCTTTAAtttcaacttttga
atttgAGAATTGTTCGACTAGGATCAATTCGTGTTTATCTGTGAAACCTC
CTTGATGTATCttcttactcttaggttccaaataaactatcaggggggat
cgggttcaataatccgaaatgataagccgtcgtcgaacatagaggtcgtc
gtcgccgcgcatagaggccgtggtcggacatagaggtcgttgccggacat
agaggtcgtggtcggacatagaagtcgtcgtcgttcatagaggtctcagc
ccaatttttttcggtctttattttataagttctggtctggaaatttgaca
acacagtcttcaaaataacaccttatcgtatttgtgtatagcaaagtcac
ggcagaacgtcgtcttcttcgataacatagaggtcttggctggacataga
ggtcgtcgtcgaacatagaggtggacatagaggtcgtcgtcgaacataga
ggtcttggccggacatagaggtcgtcgtcgaacatagaggtcttggccgg
acatagagagTCTTAGAGGCATTAGTCGtcgacatagaggtcttggccgg
acatagaggtcgtcgtcgaacatagaggtcttggccggacatagaggtcg
tcgtcgagcatagaggtcttggccggacttggccggacatagaagTCGCC
GTCGAACAACGGGATCACTAGCCTGGAGGTCACTtagagctttttgatag
actggatgacgcaGATAAGTGGCCATTCTGATTTTTATTCTGCCCAGCCA
GACTCTAACGTCGTCTGGAAGATTTCAGATGTTTTGGAAATTAATCAATG
ATTAATGATGAATgggggggtgatgatttttttttttttttcaatataag
tCATTGTAGGCATTTCTTCTGTTGGTTCTTCGCTTCGTTTTTAGCCAAGC
AAGCTCGACGCTCGCTAATGCTTCTTACTCGATGTCTTGAAATTGCCATC
GAGCGCGAAGTAAGAAGCAAGCGAGCGTCGAGCTTGCTTGGCTACTTcgt
tttcaactctaaaaagtttttttgttattttgaaattttggtcaaaatgg
cGTTTGCGTCAATAGCTCCTAGtctacaaatttttttaaaagcaatTCCA
TTTTTTGCTAAGgatttttcgaaatccaggagggcaaaagattttcaaac
ttaaaatagttgaaaaacacaattttgaatttttcgacaattttttaatt
taaatggACAGTAAAGGCATATTTCGAATGTTTGCAAGGCTCTCTTCTAA
AATTGTGCCcgagttttttttattgctgaggaaaaaaagttgctaatttG
GATTTGAGGCGTCAGGATTGCTAAGCAAattgcttaatttttttgggcca
ttttgaggcctgagcccttagcaacccggttgcttataaaaaatgtgtac
cgcAAGTATTTTTCTAGATCAATCCGCTGTTTTTCCTGGGCTTACCAATA
agttgatttacaaaattttagttcAGCCACCTATTTCCTATTTGTTGAAA
TAGGAAAGCACCCTGGAAATTcagtttaaatttaaattaaggcAAAATAT
ACCGAAAAACGGTTCTAGGTCTATGACTGGACTGAAGAAAACAACATGAA
ACTAAATGACACAAAGTTTGAACTTCTACGCTATGGTccagatgaagaaa
taaaaaaccaaactcACTACAAATCCCCTTCAGGAGAAAATATCGAAAGG
AAGAAATTGGTTTCGCAAAAACCACCCTGAGCAAGAACCACCCCGCCAGA
TAAATCGCCTTCGTTGATGCAAACCACCCCGGCGAattctatgttcgacg
acgacctctatgtccctttgtccggccaagacctctatgtccggccatgA
CCTCTATGTCCGGCCAAGACCtttatgtccggccaagacctttATGTTCG
ACGatgacctctatgtccggccaagacctctatgttcgacgacgacctct
atgtccggccaagacctttATGTTCGACGatgacctctatgtccggccaa
gacctctatgtccggccaagacctctatgttcgacgacgacctctatgtc
cggccaagacctctatgttcgacgacgacctctatgtccggccaagacct
ctatgttatcgaagaagacgacgttctgccgtgactttgctatacacaaa
tacgataaggtgttattttgaagactgtgttgtcaaatttccagaccaga
acttataaaataaagactgaaaaaaattgggctgagacctctatgaacga
cgacgacttctatgtccgaccacgacctctatgtccggcgacgacctcta
tgtccgaccacggcctctatgcgcggcgacgacgacctctatgttcgacg
acggctTATCATTTCGGATTATTGAACCCGATCCCCCCTGATAATAAACG
gaccccccgcttgttaatttttcgaaaattttccgacccCATcccccccc
ccGGTGGACCTCATTAGGACCtgtttattaacttttttttttttcaactt
tcaaagagaaggtcccttattctgttctaaatagcctgattttagcctat
atttaccttattttagggttttcgtaattacaatttccaaccccccggaa
aTTAGGTCTATATCTGATTTGGAGGAATGCATGTTCTTTGCCATAGTGGT
GAAAATATATGTAACCGAAATAAAACAATCACATTTCCCCTTTTCTTAGA
TGATCGAGGTCACGTGGTCGAACGTATTCGAAACAATCGAACCAATGAac
gagaagaaaaacaaaatttcattaatcTTGATGAAGGTACGCCACTTCTG
TTTTTCATTTAGTTGCCATTAATATTTTCcttactaactgattttactaT
AATCACAATGTTTATACTGTTATTATAAATAAAGCGCCCTGCTAACTTAG
CGAAAAGCTACCATTACGGAATAAAAACGTACCAATTTGAAGGCTGAGTT
GATTTCTTATgcaatttgaaagttttattcATAATGAAGTTTGGATTACT
CTAGAGTCGAGTTTCTGATAAACGGAGGGCATAAAACTTGACTAAAGGAA
ATTTTCACTGAGGTTAGGGGGTAAATAATTGGTATAtttaatcaatttaa
tttaatataACCTGAATCTTCAAAGATAGATATTTAAGCAAAAAGTAGGC
ATatgaaattgagaaaaattagTCACAATTAATAAACTTTTGCTATACTA
GACAACAACTGAACTGAAAAAGCTCTATTAATTAAGATAACTGCATCATA
AGTTATGAATTTATTATTGATTGaaactttaatttttcttttgaagacGA
CCGTGAACGATTCCATCAAGAGTGGCAAAGTAAAGCCGGTAGAAATCACC
AAGCGCGTGGCTTAACGCACCATGATAGCTCACATAATCGATACCAACCT
CATCAGCCACGAGCGCTTGATAGTAAGTGTGGCCAGGCttctgatatttt
ttttgtgctctactctttttaacctaagcatgaaggtaataaagatatag
atggagagtcaatgccttttgttctattctgatttatcatcggaagcaaa
cagctgtttggttgctttgggaataagatgagccttgtcatgaaaaattg
aaaaaaacttcacataataagcacaatactctaaacttctaggggaagct
gcccataaggccatcgatagatttaaaagagaattacgtgttacgattag
gaaccttgtatcgatcattttgttagagtatgaaaaccgctgctcactta
gacgtgaagattttaagatgagaaactttcaatgataatgtgatgcgact
ctcaatgtttacaaaataccagcccaaaaatatatccttatgaaattgat
atattcttttatccttaaatcagttaagactatttcgaatcgcattttaa
ctaagatttctcgccaaattaagtttttcaaaatcaacggaccagcctct
ttctgttcttataaatttacatttcggatttttttgcttccaatgatagt
acatcaaagaaaagccgctttgaatagatttataaaagatttcaacgacc
atttaggtcattaccgagacgttttctctacatctatatctttattacct
tcatgacctaaatttcttttgtttttgttcaatACCATATCAAGTCATTT
TTCTCACCCTGATTTCTCATGAATCATGTATAGATTTGTTTGAAACATTC
TAAAAACTGCCTTTTGTTGGAAAGGTTCTTTTCCGGATCGAATCCTTTTG
TTTTTGAACTCAAAAACTCTCTTTGTTGTCTTTCTTCTTAAAAGGAGTTT
CTCGTTTCTCTCTACGCAGATTctttaaaacatattttcctCCCACCCAT
TAGGTGCTGAATATCATCGAAATAATTTGACACGTCACCGCAGTGATTCC
CGTCAACCGACGGAACGACGCCGTCAGCGGGACAACGACAGACACGTAAG
ATACGAAGAAATATGA Coding sequence (CDS) from alignment at sc0000214_pilon:487987..492602+ >XLOC_041051 ID=XLOC_041051|Name=XLOC_041051|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=792bp|location=Sequence derived from alignment at sc0000214_pilon:487987..492602+ (Clytia hemisphaerica_ch_hm2_pilon)
CGCCAAACACGAAAAAGCGAACGAAACTCAGAGACTGGGACCGACAGAAT
GGCTATTGGTCACCATATACCGCCAAACACGAAAAAGCGAACGAAACTCA
GAGACTGGGACCGACAGAATGGCTATTGGTCACCATATACATGATCGAGG
TCACGTGGTCGAACGTATTCGAAACAATCGAACCAATGAacgagaagaaa
aacaaaatttcattaatcTTGATGAAGATGATCGAGGTCACGTGGTCGAA
CGTATTCGAAACAATCGAACCAATGAacgagaagaaaaacaaaatttcat
taatcTTGATGAAGacGACCGTGAACGATTCCATCAAGAGTGGCAAAGTA
AAGCCGGTAGAAATCACCAAGCGCGTGGCTTAACGCACCATGATAGCTCA
CATAATCGATACCAACCTCATCAGCCACGAGCGCTTGATAacGACCGTGA
ACGATTCCATCAAGAGTGGCAAAGTAAAGCCGGTAGAAATCACCAAGCGC
GTGGCTTAACGCACCATGATAGCTCACATAATCGATACCAACCTCATCAG
CCACGAGCGCTTGATAGTGCTGAATATCATCGAAATAATTTGACACGTCA
CCGCAGTGATTCCCGTCAACCGACGGAACGACGCCGTCAGCGGGACAACG
ACAGACACGTAAGATACGAAGAAATATGAGTGCTGAATATCATCGAAATA
ATTTGACACGTCACCGCAGTGATTCCCGTCAACCGACGGAACGACGCCGT
CAGCGGGACAACGACAGACACGTAAGATACGAAGAAATATGA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000214_pilon | genome | sc0000214_pilon:487987..492602 + |
Properties
| Property Name | Value |
|---|
| Aaloc | 286-396:4506 |
| Aaloc | 160-282:3449 |
| Aaloc | 73-156:2852 |
| Aaloc | 1-69:1 |
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