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Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000042_pilon:984948..989463- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >XLOC_040935 ID=XLOC_040935|Name=XLOC_040935|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=4516bp|location=Sequence derived from alignment at sc0000042_pilon:984948..989463- (Clytia hemisphaerica_ch_hm2_pilon)
AGTGAGATGATTACCGGCGTTGATTTGGTGGAATTACAATTACGAGCAGC
AGCTGGTGAACGACTCCCTTTCACACAAGAAGACCTCGAAATTAAAGGGC
ACTCTTTTGAAGCAAGGATTTATGCTGAAGATCCTGATAGGTAAGAGCTG
GTTTTTTGTTAAATTTTAGTAAAACATTTTTAAGATATATATTTCTTCAT
GATATAAAAAGGAGGCGGGCCTTTCTTGTAGAACTAATAAAAGTATTTTT
CTCAACTTGGTGCATGCGCACCACGGGAGGGGGAATTTCATTTTTTCTTC
TGTTGAGAACATGAAACATGATTGATAAGGACAGTTCTTATATTGTGTAT
TGATACAAGTTCCTAAAATTGTAAACTTGACAACAAGAAATCACTTCCTC
AATGTCAGAAACAATTGAAAGAATCACTGTCAATTTTCTTCAATAAATTC
AGATTTAAATGAAATGATTTTTTTTTTCAGTGACTTTTTACCAGGCACCG
GTAAATTACACTACCTCTCTACACCTTTGCCTTCGTCTGATGTTCGTATT
GAAACTGGTGTTCGCCAAGGTATTTCTTCAATCAGTACTTTCCTTTTTTT
ATGCCTTAATTTTTTCACACTGTGTGAGCAAGATCGTGGCTTTCAAAAAT
AGCTAAACAAAAAAATTCGGAAGTTTCCTTGTAAACCAAACAAGCTATTA
AACAACATTTCATTTTTGGAAGATAACTTGTCAATAGCTTGTTTGATTTA
GACCGAAATCTATTTTTGAAAGCCAAAAATTGACCTATCACGATCTTGCT
TACTAAGTGTGAAAAAAATTGTAACTACTTACGTTGATAAATATGGAGGT
TTTGTCAGGTAGAATGGAGAAGTCAAAATTTATTTTTAGCCCAAAAATGC
AAAATATCCCTTCAAAATACTGGATTAAGAACAGACAGATTTTGGCTTGA
AGCATCATATTAGGCATCAATTCATAGGCAAATTTAATAAAAATACACTT
AGAACTCAGTGCAGTCTCTTATAAGTATTTCATTACATATATAAGGCTTC
CATTTTATATGAGAAAACAGAAAGGGAATGGGAGGCAAGACATTTTGTGT
TTAACATTCTTCAAAATTTCTTCCTTCTAGGAGACGAAGTGAGCCAGTAT
TACGATCCAATGATCGCTAAACTTGTTGTGTGGGATGAAGATAGAGCGAC
CGCTCTGAAGAAGTTGTATAGAAAACTCTCTGAATATCATGTAAGTATCA
GTCATGCAAAAGGTTCTAAAGAACTTAAAAAAACTGATGGATAAAGATCT
TGCTGTTATCATTTTAATACAGTAACAATCAAGAAAAAATAACATTTAGC
ATTTTTTTTGTAGTAGTCCAAGTTCATAGTTTCAAAAAATTGAGATTTGG
TTCAATCTACCCTTTTTGATTTTTTTACATAGTACGAATGACTTTTAACT
TGAGTCTATTGTGTTAAGTCTAACCATCCTAATTTTTTCCAGGTTGTCGG
TTTGAGCACCAACTTAAAGTTCCTGAAAGATTTAGCATCGCACCCTGCTT
TTGTAACGGCCGATGTTCACACAGACTTTATTCAAGTACGATATCTCTGT
TGCATTGTTTACCTTGAATTAGCCTGTAAGACCACGTGTAATATTGTTAT
TGCCTCTGCAGTGGAGTATGGCGTACTGTGCGTGTTTTCCGCGAGTTTTC
ACGAGTTTGGTACAGGCTAACTCTTAAAGGCTCTTCTCTTATTAGTTTGA
ATCCTATCGGTATTTAAGGAACAAATATTTAAGAACAATTCTCAGCTTTT
CCACTGGAAAATGACCTACGACAATAATTCATTTTTCTGCAACTTAAATT
CTATTTTTTGCATTGAAAGTAAAATTCATATTTTTTCTAGGAACATAATG
ACGAGCTCTTCCCAAAAAGAGGAGGATTGAATGGACATCAATTAGCACAA
GCCGGATTCGCCCTTATACTCGATGAACAAAATACTTTAGCACAAAAAAG
TCGCCTCTCAGGTCCGTTTATTTAACTGTTCTAATCGAGTTTACTATTAT
TAAGATTAGGAGGATAGGACTTTTTCTTACACACTCCAGCACACTCGCGA
AAACTTACGCTTTTTGGTAGAGAACACCGTAAAGGCAGAGCATTCGGTTA
CAAAGCACAAGACCGTATGTAATATCAAATTTTCAAAATAGTACTTGTTG
GCTCTCTGCTGAAGGATCGAGTGTAAATGGAGCAATCGGATAGATAACTA
TCGAAAGTGGAGAGTCGCCAAATCCATAAAGAATTTTTTCATTCCATTTT
AGATACACATTCGCCAATGAATAACTTTTCATCGTACCGAGTGAATGTCA
ATGAACACCAATCAATTCAAATCAAAGATGGAGACCAAGGTTCGTTCTGA
GAGAGAGAGAGAGAGAGATGAACCATCCCATCAGGGGAACTGGCCTAGAA
AATAAACTAAAAATATTAGAATATTCTAGGAAATCACTACGCTAGGTTCG
TTCTTGTAGCTTCTTTTTACACTCTCTCGGACATTATAATGATTGGTTCC
CAAGAATGGCATACGAAATTCGTTTTATATGTATTATATACCGTAAGTTT
GTCTAATGTCGACATCCGTCATCTAAATCCGACACCCTTCTTTTATAGAG
CTGTGAATAACAGGAAGGCTGGAATCGCCGGTTGCTAATTAGCGGTCAGA
GAGGAAAAATATTTTTCCAATCAGTGATTTCGACCTACCTTTTAATCCTA
TGTGTAAGATGGGTGTCGGAATTAGATTAGGGATGTCGACATTAGACCAA
CTTACGTTTTCAGCGAGTTTTGCTTATTGAAGTTTTCGTAATTTTTCATT
TGAAACTTTGAGCTATTACCAACTTTACCAAGAGCATGAAAAGTATTCCA
TTATCTTACTCCTGCTTCAGATTTGACGTTGGACGTAACTTATTCTGATG
GCCACGTATCTATCAAAGTTGGCGATGAAGAATTTGTTTGCAGTGGGAAC
CTGGAAACGAGCGAGAATCAAACGATAGCAAATGTCACAATCAACGGACA
ACGGGAACGATATAGTTTTGTAACGCACGACGGTGGACTACATGTTTTCA
CAAAGGTCTAGTCTTATCCCTTTCGCGATTTTTTGGGTTGGCGAAAGTTT
CTTCCTTTAAAGTAGCGGCTGAAGAATCATCCTCTGTAAACCTCGACGTA
GGACATTTTTTCCGATTGTCGTTACGTAGCAATTAAAAATCTTAGGGGAC
CTACAACTTGACCCAATATGGAACTCGTCAAATAAAAGTCAATCTTTTGC
ATTCTTTGAATATTCTGTCTATATAGGACACACATTTCCAAGTCCAAAAA
CAGCGACCTAAGTTTGTATTAGAGACGATCGAAGCCGCTCTACCGCAAGG
TGGTATCATTGCACCCATGACTGGAACCATTATGGAGGTATGCTCTTTTA
ATTAAATTCTCTTACATACAAATGTCTGTCATTTCTGAGTCGAAGATGTT
CTTTGAGAGATATTTACCAAAGGCATCGAACCTATTAGTACTCTCTGGTT
AACATACATGGCAGACACATTTTAAAGCAATGAACAGAGGAATTTGCGAG
GGTATTATGAGAAAACTGATACTTAGCACTCAGTACGCTGGTCCGAATAA
TATCATATTATGATGATATTATCCTATTTTCAATTCTCTAGCAGCTTCAA
CACCAGCGATGATAGAATTTATTTTATTTAGAGTTTCCTCTACTGTTACA
TTGAAAGTTTTTTATTTTTATCTCATTCGATGCAATTTCTACCTTAAGCT
GACTATTAAAGTTTGATCATGACAAATTTCTCAAGCAATCAATTTCTATC
AAAATTAATTGAAGTTCTAGATAGCGGCTGAAAATCTGATTCTATTTATC
TACACACGACTTCTTACCTAGCAGCATCATTATTGCATTAGCCTTTTTCT
TAGCATAGTAGCCTACTCTCATTTTCTCTTCTCTCTCTCTCTCTAGGTGC
GTGCGAAAGTAGGGGAAGAAGTTAAAGCAGGAGATACTGTAGCTGTCATC
TATGCTATGAAGCTAGAAGTAAGCTTTCGAATTCATATTTTTAGTTGTTA
TGTTCCCATATATTGAAACCCAGAAGAAAAACTGAAAGAAATATTAAATA
AGATATATGTAGTCCAATTATTAAAAATATTAAACTTATATCTCCTTGAC
ACTAACATAGGGCTTCTTTCTTAGTAAACTCAGATAAGGCTTTTGATTTC
AGCAATAATTGTTTATCAAATATTTGGAAAAACGATCTGAATTTAATAGG
TTTTGCATTACAGTATTGTCAATATTGAATACGTCTACTTTGAACTCTGT
TTGCTACAAAATCTCGCAATACCTTTCACTTGCATTTCAATTGAGATATA
TTTTTTCATCTCAGCATAATATTGTAGCACCACACGATGGTGTCGTAGAA
GAAGTATTTGTCGATGCCAGTCAAATGGTCAACCAAAATGACGAAGTCCT
CAAAATCAAGGAACAT Coding sequence (CDS) from alignment at sc0000042_pilon:984948..989463- >XLOC_040935 ID=XLOC_040935|Name=XLOC_040935|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=2220bp|location=Sequence derived from alignment at sc0000042_pilon:984948..989463- (Clytia hemisphaerica_ch_hm2_pilon)
AGTGAGATGATTACCGGCGTTGATTTGGTGGAATTACAATTACGAGCAGC
AGCTGGTGAACGACTCCCTTTCACACAAGAAGACCTCGAAATTAAAGGGC
ACTCTTTTGAAGCAAGGATTTATGCTGAAGATCCTGATAGAGTGAGATGA
TTACCGGCGTTGATTTGGTGGAATTACAATTACGAGCAGCAGCTGGTGAA
CGACTCCCTTTCACACAAGAAGACCTCGAAATTAAAGGGCACTCTTTTGA
AGCAAGGATTTATGCTGAAGATCCTGATAGTGACTTTTTACCAGGCACCG
GTAAATTACACTACCTCTCTACACCTTTGCCTTCGTCTGATGTTCGTATT
GAAACTGGTGTTCGCCAAGTGACTTTTTACCAGGCACCGGTAAATTACAC
TACCTCTCTACACCTTTGCCTTCGTCTGATGTTCGTATTGAAACTGGTGT
TCGCCAAGGAGACGAAGTGAGCCAGTATTACGATCCAATGATCGCTAAAC
TTGTTGTGTGGGATGAAGATAGAGCGACCGCTCTGAAGAAGTTGTATAGA
AAACTCTCTGAATATCATGAGACGAAGTGAGCCAGTATTACGATCCAATG
ATCGCTAAACTTGTTGTGTGGGATGAAGATAGAGCGACCGCTCTGAAGAA
GTTGTATAGAAAACTCTCTGAATATCATGTTGTCGGTTTGAGCACCAACT
TAAAGTTCCTGAAAGATTTAGCATCGCACCCTGCTTTTGTAACGGCCGAT
GTTCACACAGACTTTATTCAAGTTGTCGGTTTGAGCACCAACTTAAAGTT
CCTGAAAGATTTAGCATCGCACCCTGCTTTTGTAACGGCCGATGTTCACA
CAGACTTTATTCAAGAACATAATGACGAGCTCTTCCCAAAAAGAGGAGGA
TTGAATGGACATCAATTAGCACAAGCCGGATTCGCCCTTATACTCGATGA
ACAAAATACTTTAGCACAAAAAAGTCGCCTCTCAGGAACATAATGACGAG
CTCTTCCCAAAAAGAGGAGGATTGAATGGACATCAATTAGCACAAGCCGG
ATTCGCCCTTATACTCGATGAACAAAATACTTTAGCACAAAAAAGTCGCC
TCTCAGATACACATTCGCCAATGAATAACTTTTCATCGTACCGAGTGAAT
GTCAATGAACACCAATCAATTCAAATCAAAGATGGAGACCAAGATACACA
TTCGCCAATGAATAACTTTTCATCGTACCGAGTGAATGTCAATGAACACC
AATCAATTCAAATCAAAGATGGAGACCAAGATTTGACGTTGGACGTAACT
TATTCTGATGGCCACGTATCTATCAAAGTTGGCGATGAAGAATTTGTTTG
CAGTGGGAACCTGGAAACGAGCGAGAATCAAACGATAGCAAATGTCACAA
TCAACGGACAACGGGAACGATATAGTTTTGTAACGCACGACGGTGGACTA
CATGTTTTCACAAAGATTTGACGTTGGACGTAACTTATTCTGATGGCCAC
GTATCTATCAAAGTTGGCGATGAAGAATTTGTTTGCAGTGGGAACCTGGA
AACGAGCGAGAATCAAACGATAGCAAATGTCACAATCAACGGACAACGGG
AACGATATAGTTTTGTAACGCACGACGGTGGACTACATGTTTTCACAAAG
GACACACATTTCCAAGTCCAAAAACAGCGACCTAAGTTTGTATTAGAGAC
GATCGAAGCCGCTCTACCGCAAGGTGGTATCATTGCACCCATGACTGGAA
CCATTATGGAGGACACACATTTCCAAGTCCAAAAACAGCGACCTAAGTTT
GTATTAGAGACGATCGAAGCCGCTCTACCGCAAGGTGGTATCATTGCACC
CATGACTGGAACCATTATGGAGGTGCGTGCGAAAGTAGGGGAAGAAGTTA
AAGCAGGAGATACTGTAGCTGTCATCTATGCTATGAAGCTAGAAGTGCGT
GCGAAAGTAGGGGAAGAAGTTAAAGCAGGAGATACTGTAGCTGTCATCTA
TGCTATGAAGCTAGAACATAATATTGTAGCACCACACGATGGTGTCGTAG
AAGAAGTATTTGTCGATGCCAGTCAAATGGTCAACCAAAATGACGAAGTC
CTCAAAATCAAGGAACATCATAATATTGTAGCACCACACGATGGTGTCGT
AGAAGAAGTATTTGTCGATGCCAGTCAAATGGTCAACCAAAATGACGAAG
TCCTCAAAATCAAGGAACAT
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000042_pilon | genome | sc0000042_pilon:984948..989463 - |
Properties
| Property Name | Value |
|---|
| Aaloc | 1009-1110:103 |
| Aaloc | 937-1008:521 |
| Aaloc | 826-936:1191 |
| Aaloc | 643-825:1595 |
| Aaloc | 556-639:2213 |
| Aaloc | 433-552:2627 |
| Aaloc | 340-432:3025 |
| Aaloc | 232-339:3385 |
| Aaloc | 142-228:4036 |
| Aaloc | 1-138:4517 |
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