|
|
Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000350_pilon:238538..244545+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >XLOC_040695 ID=XLOC_040695|Name=XLOC_040695|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=6008bp|location=Sequence derived from alignment at sc0000350_pilon:238538..244545+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGATGAACCTTGGCCACCGGACCCTGATTGTAATTCTTACGGCCCATCT
AGTCCGGTGTGATGGCCACGAGGAATGCCAGCAAAAGTTCGAATTCAAAG
CTAGCATGTGTCGACCAGATAAACCCCAAGGCTGTCTCTATGGACCACCA
AAGAATATATCACATTGTGAAGATTTATCAATTTCTACAATCATCAATGA
GCCTTACACTACCTACTTTTTCCGTGGTGAGTCTGTTGTTCttgtcaaat
ttcatttcttcgCTTCTGTCAAAAAAGGAAGATAGATTAGTCACATATAg
tctttataaaaacactgcTCTCCAAGCTTAttgttttcctttgttattat
caaaagatgaaaattgatttgctcagtttttgccctttttgatcAAGTTA
CCAAgtattcctcttgggattggtttatgatttaatcacatgatcaaaaa
gtgagcaaaaaaactaatttctcaacacaagttcaagtaagaaacaatgg
aaagaaacaaaaggcttccaaacCGGGTTTTTTATGCGGACTATGGTCAC
AGATTTCAGAACACAGGGTAATTGATCGCATTAATCCCCAGCTGatacac
aacgttttttcaacgtctATCTAACGTTTACAATGTCCATATAACATTAG
AGTATttgtctttttactttttttgaaagatacattcataaaaatatttt
attacgAGATTgatattttaattgtttttataagtttattGCTTCATTGT
AACCATTTATATGTTAATAACTGTGTTGCGTTAAAGAGAGAACCTAgaca
tacagggtgtccggaaaaaaaggtaccgagtcgtaccacttctacaGGGT
GTcgctaataaaagtatcgagtttgaacattcgattgagtaaaaaagttt
gtgtgtgttatcgctaaaatataagaacgttctccatcacataggctcat
tacaaaaggtagttacaacgtataaattaatcaatagccctttttactat
tcccctattgcataaatgtacgtctttaaaaatcaaaattaataaaaatt
caaattctctcggggtagtaaaaattagttgcttttgtaaacaggcagag
tatgtttttattgttacgtaatgacaaagaaaaaagagggagagcttaaa
atacaattttgtgaatacacacttaaaactttctactcaatcgcatgttc
aaactcgatacttttattagggacaccctgtatagaaggaaagttcttgt
gtgtgtttatcaaattttctcTCTGTGTAATATTAATTGTCACGAGACAT
CTTTtattgaataacttttacaaaaaacaattctcaataacttcaATGTC
AtggaaattgtaaaaaaatttaattctttCTTAATCATAaggactgttgt
aaaaacaattatgttgatatatatattttcttgcattttgttaaacacac
gtaacaaccttctactcagaatcatgttcgaactcgatactttttttcgg
gacaccctgcaTACACACAATCTTTTCTACTTGTAGTCGTGTTCTCTGTC
ACAGGACTTTTTCTCAAGACACCCTGTATGCTTATGTCCCGAATTGGTGT
CGAGTGCAAATTGAAACTACAACtacaaacatttttcttttttcactcaC
AGACCTACCAATTACACGTGAttattttttaaggctttttattcaatttt
cctTTATTGTAGCGTATATGGACATCCTTATAATAAACCAATGTTGTGGT
TGCCTCAACTTCACGCAAATATACCGGACAACCTACAACGATACAACGGA
ATTCCTTCAACGGAAAAACAGTGGAACTGGACCCGTAGAACGAATCATAT
ATCCGGTCTTAGGTGATCCTTCACAGAAAAAGTATTACGGAATGTATTTT
GTACCGATGTATTATCTGGAAGAAGGACTTCTTATCACTTTGAAGAAAAC
TTCTGGTGAAATTGTCACTGATCTGTTGTTTCGAATCGCTGGCTTGTGGC
CACTGTTGGTCATCTTTCTGCTCATGGCAGCGATATCCGGTTTCATACTT
TGGGCTGTTGTAAGTCAATTGGGGCATTTCTACTAAAAGATGACTGACTT
TATACATAAGTCAACTTACAGACAAAGCCACTTTAatctaacctgagatc
agatcgtGATTGTTTTCTAcccgctgaagctctaaagggatgggtgaaaa
cataacaatctgacaaatatgctatctcaaaatcgtaaggaccgcgttca
tCTAAAAAGACTGGGagtgacaacaaagttgcgtgattgtgtatatgaat
agggcgccgtatcaggaaaatttagtttttgacttttcggcgcacaacaa
gattttcattgtagaattttccgcgggaggactattttcctcagatagTT
AATTTTCAGGGgctttcagaggtttaccgtgcccgAAAGAAAATTATGAG
CAGCTGCTATCGGGTTACTTTGATCCAAATGCCGCAATTGCAAGTTGAAA
ATACACGCTGTTCTCTTTATACTATGATACACATTTTAAGATTTAGCCAC
TATCCCGAGAAATCGTTCATTACCATAagttagatagatagatagataaa
cCTTCCCTTCCCTGCACAGGGAATAGGCCCTATCCTAAGATAGAGATCAC
AGCGCTAggtagataaaataaaaagcgaaaaaaggaaaaattatgcaaat
aagtaactagataaaactatcaaaaaatgTGCTACTTGGAATTAATAATT
TTACGCCAATCCAGACGATTCAAAGCTTTTTGATACCAGTCATTTTTTGA
CAAACCAACCTTTTTCAAGCACTTATAAATTCAACCATAAGTTACCCGAG
AAAAACAGAGCATGAACACAATGCTTTGTTATCAACTTCATTTTTAGGAG
ACAAGGAGGAATCGGGAAGCTTTTCGTCGACCGTTCCATCAAGGATTTTT
GGATGGTTTTTGGTGGGGATTTGTTAGTATGACTACTGTTGGGTAAGAAC
TTTAATGTATTTATTGATTGTTCCTATGGGACCTATAGGgaatcaaaatg
atgaaaatcggGTGCATTTTCCAAACAGGAATAACTTATTGACTTATTCG
TCTTGCATAGGTATACTttgaccatgttcagacgttacggttccgtatcg
TTCTGAAACGAAACggaacgtcaaaaaagaagacgttacgaAGCAAAAAG
GAAcagctccgttttcttgctaaGAAACGTTCTGAAACAATATGACCATt
ctcgatccgtaacggaaGCCATACCGGAACGATGGGAAACACCTGAACAT
CTGAACATGATctttgtttctttattcttgattatttgttgttatacaca
ctttttctaaattttttgaaattttcaggctttaatgttcctaaaatgtt
cttattgtaATATGATATTAGcacattttattctttttgagCCTGCAATG
TTCTCAATTATAAAACTTTGGTAGGAAAATTTCTATGGATATAAACTCCT
GTGTATAACGGTGCTTATTTCTATGTATTCTTGATTTAGTCTTGGTAttc
ttagtttgttcttaactATTCGCTAGAGCTGAGCCTCTTTTTTAGATTGT
TTTTATGAATaggttttggaaaattttcagcttcgtgctcttataaaatt
gttctttgtaGTTACGGGGACAAAGTACCGATCACGTGGGTTGGTCGTTT
ATTTTCGTCTTTTTGGATCATCGGTGGAATCACTCTCTGCTCCATTTTGA
CTGCTTCCATgactgacgtcatcaatcacgTGACCTTACCCAAACAAGCT
ACCCTCTCTGGAAAAGTATTTCTCTCTTACGttctgtcattttttatttt
tactggaATTGAGTATTCCTCTCTATGCACGTCCTTAATTTatgaaagca
taaaaaatatttacagcAAGAGAACTCGAGTGATAATTTGTCCATATTTT
TTCAGGTCGGTATTTTGGAGGGTCGTTTATTTGAAACTCAAATGGTGACG
AGGAGCGGTGGAACTTTCCATGAGAGTAAGCGAAATGAAATACTTATGAC
AAATACCTACACAATTGGCAATGTTTGGGTCTACTTTTCAAATTGTTGTC
CCTGTAATGCATGACCCCAAATCTTTACCACACCATCAcgctaaaaaaat
gtttaatcaCGCCCGATCAAGCCagaaaaaaagtccaaatcacgccaATA
CGCAAgcatttttttttgggggggggggggtgatctTCTTAACTATAAAC
ATTTTCCATTCTCTTTCCATTCAGTGCCAACATTGAAAGATCTTCTTGAC
ATGTTGGACAGCAATGAAATATCTGGTATGTTGAGATTGTTTTTCTAAAC
AAAGTTCgcattaaagtctattcacgataagtgtgcactcttttttcttt
tatctataacttttgaaggaattcttcagtctttgaaaatgaaagttata
gcgcttttctaaaaaatcttcatttttttcttctttattttcatcttcgt
ttttataatttttttaaagatttttttatttcaaattgttccacacacaa
atatctctccaacgataccaaatttataaagattaaataattccttcaaa
agttataggcaaaagaaaaaagtgcacacttatcgtgaatagactttagt
ttctTCTTATTTAAACAATCaatcaccctgatattcttatagaaattATT
CATATGAAAAAAGGCGTGTTTATTCTGAGGTATTTTGCAAATTCACGTAA
ATTTTCGATTGAAAGTTTCGATGATGTAATATGAAAATGGCACTTAAAGT
TTCCTGATATTCTGTAAAGCTAAACAGATGACGTGTCGCAAACGTTTACT
CGGTTTATTGGACATTGAATTTGTCAACTTaacggttttgtttttaaata
agagtgatgtcgtttgcttattcatcaatttaaattttcaagctttttta
tattgaattaacgcgaatgtggagcaagattgttgAGAATGGGgaataga
aaaacattttttgcctaTATCGTCTATATCAGCACACtataacaatagaa
agacactgtcctgatatcaaacatgtgtctgatatgaaatacgggaacac
ttatgtaaaaataaaacctttaaacttgattttttgttcaatttcacgaa
agtttcgagttatggagattgcTTAAAAGGGTTTGTCAATTGCTTGAGCA
AGAAAGCTTGTTTGAATTAAAGAAGTTATTCTTTCGATATTTCATTAGGA
ATACTTTTGGATTACATCACCAAAAACTACCTTCTTCCAAAAGCAATCAC
CAAGACAAATCGAGATAAAAATCTCTACCGTTCCACTTCCTTTCAATCGA
CTGCTCATAAATCTTACACATATGGCGCCTTATTCAGAGAAGAAAGGGAC
GCCAATTTCTTCAGAAATGTGATTTATCAAACGGCAGATGGCGTGGAAAT
ATGCTTCTCCAGAGCTTTTAGGGACAAAGTAGGAAATCttatttcatata
atttttaacAGTTGTAGAAAAGACAACGAAAGAATCTTGTTTTTCTAACC
ATTACccaagttcgaaacaaaaatttgatagaaaaaagaaatgaaatgtC
TTTCTCGTATCCCCTGATCGATTTTAATCACCAAAAAACGTATTCATGAA
TCCCAAAGACAGGATTGCAGTGTGCTAAAGGGTGCTTAGAATTCACCTTT
ACCTGTTTGACCTCgattgaatgacaaattaaaGTTCTTTCCGGAGATTT
GAATCGGACGGCAAGGTGGAGTTTGTAAGGCTaagtaagaaatatttttt
tagatttgtcataacatttcaaatatttttctctcaGATGGATTACGTAC
CTCCCGCATTGTTTTCACCAGATTCGAAAATCTTCCAGCATTCGTGTTTC
GTTTTCTTTGCAATTCTCGTTTGTATCGGAATGTTTGGTATTTTGTACGA
ATGTCGccggaagaagaagaaggaagcGGTAATACCGGCTCAGGGAAGCA
AAGAGTGA Coding sequence (CDS) from alignment at sc0000350_pilon:238538..244545+ >XLOC_040695 ID=XLOC_040695|Name=XLOC_040695|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=2688bp|location=Sequence derived from alignment at sc0000350_pilon:238538..244545+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGATGAACCTTGGCCACCGGACCCTGATTGTAATTCTTACGGCCCATCT
AGTCCGGTGTGATGGCCACGAGGAATGCCAGCAAAAGTTCGAATTCAAAG
CTAGCATGTGTCGACCAGATAAACCCCAAGGCTGTCTCTATGGACCACCA
AAGAATATATCACATTGTGAAGATTTATCAATTTCTACAATCATCAATGA
GCCTTACACTACCTACTTTTTCCGTGATGATGAACCTTGGCCACCGGACC
CTGATTGTAATTCTTACGGCCCATCTAGTCCGGTGTGATGGCCACGAGGA
ATGCCAGCAAAAGTTCGAATTCAAAGCTAGCATGTGTCGACCAGATAAAC
CCCAAGGCTGTCTCTATGGACCACCAAAGAATATATCACATTGTGAAGAT
TTATCAATTTCTACAATCATCAATGAGCCTTACACTACCTACTTTTTCCG
TGCGTATATGGACATCCTTATAATAAACCAATGTTGTGGTTGCCTCAACT
TCACGCAAATATACCGGACAACCTACAACGATACAACGGAATTCCTTCAA
CGGAAAAACAGTGGAACTGGACCCGTAGAACGAATCATATATCCGGTCTT
AGGTGATCCTTCACAGAAAAAGTATTACGGAATGTATTTTGTACCGATGT
ATTATCTGGAAGAAGGACTTCTTATCACTTTGAAGAAAACTTCTGGTGAA
ATTGTCACTGATCTGTTGTTTCGAATCGCTGGCTTGTGGCCACTGTTGGT
CATCTTTCTGCTCATGGCAGCGATATCCGGTTTCATACTTTGGGCTGTTC
GTATATGGACATCCTTATAATAAACCAATGTTGTGGTTGCCTCAACTTCA
CGCAAATATACCGGACAACCTACAACGATACAACGGAATTCCTTCAACGG
AAAAACAGTGGAACTGGACCCGTAGAACGAATCATATATCCGGTCTTAGG
TGATCCTTCACAGAAAAAGTATTACGGAATGTATTTTGTACCGATGTATT
ATCTGGAAGAAGGACTTCTTATCACTTTGAAGAAAACTTCTGGTGAAATT
GTCACTGATCTGTTGTTTCGAATCGCTGGCTTGTGGCCACTGTTGGTCAT
CTTTCTGCTCATGGCAGCGATATCCGGTTTCATACTTTGGGCTGTTGAGA
CAAGGAGGAATCGGGAAGCTTTTCGTCGACCGTTCCATCAAGGATTTTTG
GATGGTTTTTGGTGGGGATTTGTTAGTATGACTACTGTTGGGAGACAAGG
AGGAATCGGGAAGCTTTTCGTCGACCGTTCCATCAAGGATTTTTGGATGG
TTTTTGGTGGGGATTTGTTAGTATGACTACTGTTGGTTACGGGGACAAAG
TACCGATCACGTGGGTTGGTCGTTTATTTTCGTCTTTTTGGATCATCGGT
GGAATCACTCTCTGCTCCATTTTGACTGCTTCCATgactgacgtcatcaa
tcacgTGACCTTACCCAAACAAGCTACCCTCTCTGGAAAATTACGGGGAC
AAAGTACCGATCACGTGGGTTGGTCGTTTATTTTCGTCTTTTTGGATCAT
CGGTGGAATCACTCTCTGCTCCATTTTGACTGCTTCCATgactgacgtca
tcaatcacgTGACCTTACCCAAACAAGCTACCCTCTCTGGAAAAGTCGGT
ATTTTGGAGGGTCGTTTATTTGAAACTCAAATGGTGACGAGGAGCGGTGG
AACTTTCCATGAGAGTCGGTATTTTGGAGGGTCGTTTATTTGAAACTCAA
ATGGTGACGAGGAGCGGTGGAACTTTCCATGAGATGCCAACATTGAAAGA
TCTTCTTGACATGTTGGACAGCAATGAAATATCTGTGCCAACATTGAAAG
ATCTTCTTGACATGTTGGACAGCAATGAAATATCTGGAATACTTTTGGAT
TACATCACCAAAAACTACCTTCTTCCAAAAGCAATCACCAAGACAAATCG
AGATAAAAATCTCTACCGTTCCACTTCCTTTCAATCGACTGCTCATAAAT
CTTACACATATGGCGCCTTATTCAGAGAAGAAAGGGACGCCAATTTCTTC
AGAAATGTGATTTATCAAACGGCAGATGGCGTGGAAATATGCTTCTCCAG
AGCTTTTAGGGACAAAGAATACTTTTGGATTACATCACCAAAAACTACCT
TCTTCCAAAAGCAATCACCAAGACAAATCGAGATAAAAATCTCTACCGTT
CCACTTCCTTTCAATCGACTGCTCATAAATCTTACACATATGGCGCCTTA
TTCAGAGAAGAAAGGGACGCCAATTTCTTCAGAAATGTGATTTATCAAAC
GGCAGATGGCGTGGAAATATGCTTCTCCAGAGCTTTTAGGGACAAAATGG
ATTACGTACCTCCCGCATTGTTTTCACCAGATTCGAAAATCTTCCAGCAT
TCGTGTTTCGTTTTCTTTGCAATTCTCGTTTGTATCGGAATGTTTGGTAT
TTTGTACGAATGTCGccggaagaagaagaaggaagcGGTAATACCGGCTC
AGGGAAGCAAAGAGTGAATGGATTACGTACCTCCCGCATTGTTTTCACCA
GATTCGAAAATCTTCCAGCATTCGTGTTTCGTTTTCTTTGCAATTCTCGT
TTGTATCGGAATGTTTGGTATTTTGTACGAATGTCGccggaagaagaaga
aggaagcGGTAATACCGGCTCAGGGAAGCAAAGAGTGA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000350_pilon | genome | sc0000350_pilon:238538..244545 + |
Properties
| Property Name | Value |
|---|
| Aaloc | 1174-1344:5838 |
| Aaloc | 946-1173:5251 |
| Aaloc | 895-942:4277 |
| Aaloc | 823-891:3956 |
| Aaloc | 670-822:3663 |
| Aaloc | 574-666:2898 |
| Aaloc | 229-573:1715 |
| Aaloc | 1-225:1 |
|
