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Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000041_pilon:943600..948946+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >XLOC_040608 ID=XLOC_040608|Name=XLOC_040608|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=5347bp|location=Sequence derived from alignment at sc0000041_pilon:943600..948946+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGGACGAATCTCAAATACAACCGATACAACATCGCACCACCATTAAACC
GAAGCATGACACATACAATGACGGGCTTTTTGGACtcggtgagatttttt
ttctgcgTCATATTTAACAATTACTTTATTTAACTTGTCTCGTGAAGCTA
CTTTAAAGTGGACTGGGCTCTAGGCCATCAGGGTCAACGTGCCAACTTGA
TGAGGCTAAATGAAGAACAACTtaaagaacaacttaagaacaatACTAAG
TCTGGAATGGCTTATGATTTTAACAATTTAAGGGTCAAAGTAATGAAATT
GGCTAAAAAGCCTAAAAACCACAGCCTTGCTCTAAAAATAAGAGCAggat
aaagaaaattgaagctGGAAGCGCCAAGACAATAAGACAAACCGAGCCTC
AATTGAAATTTactgtttcttttttaaaaaaaagtgtatatacGTGTGAG
TGAGATTTGATTCTGAAAACTCGAATCcttgatttcatattttcatctGC
TTAAATAGCTTTCCACTTGAAATGATCTCTTTGAAACGTTTTCAGGTCTT
CTTCAATTCTACATCGCAGTGGTTTTAATCGTTTATGGCATATCTGCGAT
TGCAGCATTTCGTACCTTTGCTGACGAGATGAGCAAAATATGTCTCATCT
TTGCATTATGGGTAATCATTACTGGAATCATATCGTGTTTATCAGCCGAG
TATCCAACGAAAAAACGattgaatcagcaaaattttggatttaattTGTT
GAGCATTTCATTATGTATTGCTCTTTTTGCTGGCTTCTTTGCTGGGATTG
TAAGTTTTACCACTTTATTATCTTACCAAAGCTTCCATATTATTCAAAGG
AGTTATAAGCTCTCTGGACAAATGGTTGCCCTTAATCCTTTAAGTACCAA
TGACAAGCAActagacatgggctatataggagagCGAAGCCCTCCGAAGT
AATGCTCaatttgagttagaaatcgttatttttggtctaactcgtaggaa
ttggatttgggtttcatggtcaaggaaagtgagtctttccagcgagattt
aagccaaaaatccaaaaaaagaaataatttgacaaaaatttgacaatttg
acacttttttaagattttgaccgttttttgaccatttttgatcAACGAGT
GAATcaagaacctccaaaattggccctgctctactttattctgtcctcta
gcgaattAATTTCAAGTTTactactgggcacctttctatcattcaggcag
gtctgCACAGCTTCTATTTCCTTTTAGATCCAGAGATATAAGCCTTTCAA
GTTTGAACTAACTCTGGGTTGGTTGGCAGATGATGGGTATTGGATGTGAG
GACTGGATCGAAAtaaaatttccttcaaaaataaaagatcCTTTTTTATA
GTTTTCCTCTGGAAACTTTCGAAActgaaactttttcctacaatAAATCG
Tgatttttcgatttattaaagagattactttttaaattttatgatctttt
taacccttagaaaattttttgaaggtgAAGAGCGGTACTCGTCATCCACG
TTCCATTTAAATTACATAATATTTTCTATTCATCTGTTTTAGATTGGTGG
CATATATGATTATACGGATTGTATACGTACGCTTTCTGATTCATGCATGA
AAATGCGCGCTACTGtcattgcaacattttcgattgTTTTGGTATTCTGT
CAATTCATTATAGCGCATGCGCTTTGCATTATATGTTTCACGCGGGATTG
CAATTGTCAAGAATGTCTGGATGATACAAAACCACCACATCTAGATCGTA
AGTTTATTAAAAATGTGCTGATTAAAATCAATACACATGTGGCGTTTTGG
TATAGCGGTCCTTGATCTTACTTACTGATGTTCGATTCCCATAAGCAGCG
GCTCACTTGGTAAGACAATGAACCTTCTATCGGGTTAACCTATACCATGC
GAGGGGAATCGAGTAGCCatttcaaggtgctgacgggacgcttattgaaa
gcgtctatagttacAAAAATGGGTCTCAAAACCTCCTGCAACTCAATCAA
GTAAATGAAGATCTATCTATCTTCTGATCTATCAGCCTTCGCGACAATAA
AAGCTTGGTAAGAGGTTTAAAGGGTTGAATGAGTTAAAATGAAATCGACC
AATAAAGTGGCTTCAAAAGTCATTCAACCTTGATGAATTCGACCCCAACT
CATTTTATTAATAGTTGATTGCGGTGCAGTGGGATTGATGTCtcttaggc
gaaaataaaaaaatgtttccggagaccggccgggtgaaaaaaaaatttct
tacccGGTCGCAGACtgtgggttcatctatatggttcatcataaagaaaa
tcaagttgaccgttcaagctatcaaacgtcatttggttagatattcccgc
ctgtaagttttgttcgttagtagttgatacattagaattcagggcttact
tcatactgtttgtacataaaagttatctttaaagttctatttcaatgatc
ttaagttatcaaaaatagcaaaataatcTTTTTCCGGCCGGCTGCATGGG
AGCTTTTTTCcatcacccgcattccggaagcactacatttttttattttc
gccttatttcgctttttatgattctgatagcactCGCCAAATGATTGTAC
AACACCCCTCAGTAAAAGTGGTGCATGGGgttctgggtacgagattgaag
GCTAGTTGTTATTATTATACCATTTTCCAAATTGAAAGACTCACAAAAAT
ACGGAGTGTACCCACTATATTGTGTCACGATTTCTGCAGCACATTTTACT
CTACTTTATATCTGTTTCAAATGTGAGCTAATTCAGATTTTGCCTCATCA
TGGTTAGCCTTCCAAATATCCTTATTGTGCtatttccggggggggggggg
ggtactagggcaaaatgggttacggggatgctccgctggtcagggtacct
tttttaacctccacgagtcccaggtagggtcgcaaaaacaccaaaataga
aaaatcagtccctcgtagggtgcctatttttggaaaatttggggaaaaag
tagaacatttgagaaaattttggaattttagtcccattgagggtcacttt
tttggcaaatttcgagtcccacgtagggtccatttttcgaacctcagcgg
agcacccccgtcggtcgacaagggtagtaccccccccccccgggggctat
ttgagaataaaatttctttcattttttagcgTTTTACTGAGCACCCTCGA
TTCtcaacctcattttactgaccaccttATCTTTTTGTCTACTCTGGATT
TTAGCACTTGAAAAAGCAGACTCCCGTGGactttttggcccagcgctagc
gatagggcctttcatttgcaactttccgtcctcatccttccgctgtctgt
ccgtccgttttggtagaaacggcgcttaaaaccagtaacacactttttaa
ttttgccgtctggagagggaaaagcttgctaaagtcggatactggctata
aaagatatattttctgattccgcgctccttcaaaacaattttcaaaacaa
aacaagatggcggtcgaagtgaggaggttgattcatactttcttgaacat
tttctttgctttagtggtcaagagactttcaaaccaaagaaattttgtaa
tgatttttctttataaacctttttcaacattctgtcatatcttatagtct
ttgctcaagttttaataaagttttatgagtgaaaattctacctaaaatca
ccttcattttttagcttcttgttttcaaaaagattttatttttaggaaat
aatggcttccgatatagaaataaataaactgaaatgcagctgatgtgtaa
aattgaataagattggaacttttttcttgatgcgacacaagaaaacagtc
acttctggatatGTCGCTGTTTTACCAAAACAACAGTCAGTGGTGGGACG
TGtgcgtggtatgattttcaaaactCAACAACAATAATTATTACAAGtta
actgattctggaatttggtaatggacactaaaatggagctcgTGTGTAAA
Ttcgaacaagattggaactttttccatgatgttacgcgtgaaaatggtta
tttctggttctgtctcgtttgacgattggtggcttgatttttcaaactcg
acacagaattatttcaagtaagctGATTATGGAATTAAGTTattggagac
taaaatgcagctcaatgtgtaaatttgaacaagattgggactttttttca
tgattctacgtatattaaataaaatggtcttttcaaaaatggtctcgact
gcggtcgagcaatgatgatgatgatgaaataaAATGGCCCTTTCtgttct
ggatctgtcgcattaaacgatcggtggcttgatttttcaaactcgactca
cataattatttattgtttaaaaagtataaactgattctggaatttgttaa
tggacacgaaaatgcagctcatgggtaaatttgaactatattgaaacatt
tttcatggttgcaacgcatgaacagtgaaaatgatcatttctggatctgt
cacattaaactgttaactcacattaaccacatgaattttattgGCCTGGA
TATGCagactgtaaactatttcaccgtctagttttttaaagattattttt
ctggtttacagtctggtccaactaacatgcctgcatggatatttctccct
gcatatgtgagtgcacctaattggttaaaaagcgcccactcactataTAT
TTGCgggtattttttatatttttctatgggcgcgcataatttatggaaat
tttccacctaggacatttttattccaaccccccgccgcttattaagtttt
gagattttttccaacctcccccccgcttattccaaacccccccccccccg
ctattaggtacccgagagtatcaaCCGTGAACCTGCGCCTGTAGACCCGG
TTGGAAtggagaccattcaataaagtttcaagcgtctaactattgagaag
taccgcggtgactttgaaaatatttttcctgtCTTTGATCAACAtggtca
tacatttgctgttttgcacgctcgttttcaacacgttacttttcgctggg
ccttcacgcccaacgggcttcttgtttattTTCCAAACCACCCTCAACAT
AGAGggcacagactatttctggaattcTCTCCAATTCTCCTTTTTTAGTT
ATTTTGAAGAAGAAGGTCAACCAGATACTTCAAAGCTTGCATTGGCGTAA
CAACCACTCAAACAGAAGTAACTGTGACGAAATGACAGAAGTTGGAACTT
CACAACCAACTCAAACAGATTCACAAGATCGATCACGACCATCTTAG Coding sequence (CDS) from alignment at sc0000041_pilon:943600..948946+ >XLOC_040608 ID=XLOC_040608|Name=XLOC_040608|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=1392bp|location=Sequence derived from alignment at sc0000041_pilon:943600..948946+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGGACGAATCTCAAATACAACCGATACAACATCGCACCACCATTAAACC
GAAGCATGACACATACAATGACGGGCTTTTTGGACtcgATGGACGAATCT
CAAATACAACCGATACAACATCGCACCACCATTAAACCGAAGCATGACAC
ATACAATGACGGGCTTTTTGGACtcgGTCTTCTTCAATTCTACATCGCAG
TGGTTTTAATCGTTTATGGCATATCTGCGATTGCAGCATTTCGTACCTTT
GCTGACGAGATGAGCAAAATATGTCTCATCTTTGCATTATGGGTAATCAT
TACTGGAATCATATCGTGTTTATCAGCCGAGTATCCAACGAAAAAACGat
tgaatcagcaaaattttggatttaattTGTTGAGCATTTCATTATGTATT
GCTCTTTTTGCTGGCTTCTTTGCTGGGATTGTCTTCTTCAATTCTACATC
GCAGTGGTTTTAATCGTTTATGGCATATCTGCGATTGCAGCATTTCGTAC
CTTTGCTGACGAGATGAGCAAAATATGTCTCATCTTTGCATTATGGGTAA
TCATTACTGGAATCATATCGTGTTTATCAGCCGAGTATCCAACGAAAAAA
CGattgaatcagcaaaattttggatttaattTGTTGAGCATTTCATTATG
TATTGCTCTTTTTGCTGGCTTCTTTGCTGGGATTATTGGTGGCATATATG
ATTATACGGATTGTATACGTACGCTTTCTGATTCATGCATGAAAATGCGC
GCTACTGtcattgcaacattttcgattgTTTTGGTATTCTGTCAATTCAT
TATAGCGCATGCGCTTTGCATTATATGTTTCACGCGGGATTGCAATTGTC
AAGAATGTCTGGATGATACAAAACCACCACATCTAGATCATTGGTGGCAT
ATATGATTATACGGATTGTATACGTACGCTTTCTGATTCATGCATGAAAA
TGCGCGCTACTGtcattgcaacattttcgattgTTTTGGTATTCTGTCAA
TTCATTATAGCGCATGCGCTTTGCATTATATGTTTCACGCGGGATTGCAA
TTGTCAAGAATGTCTGGATGATACAAAACCACCACATCTAGATCTTATTT
TGAAGAAGAAGGTCAACCAGATACTTCAAAGCTTGCATTGGCGTAACAAC
CACTCAAACAGAAGTAACTGTGACGAAATGACAGAAGTTGGAACTTCACA
ACCAACTCAAACAGATTCACAAGATCGATCACGACCATCTTAGTTATTTT
GAAGAAGAAGGTCAACCAGATACTTCAAAGCTTGCATTGGCGTAACAACC
ACTCAAACAGAAGTAACTGTGACGAAATGACAGAAGTTGGAACTTCACAA
CCAACTCAAACAGATTCACAAGATCGATCACGACCATCTTAG
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000041_pilon | genome | sc0000041_pilon:943600..948946 + |
Properties
| Property Name | Value |
|---|
| Aaloc | 550-696:5201 |
| Aaloc | 343-546:1593 |
| Aaloc | 91-342:548 |
| Aaloc | 1-87:1 |
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